Wall clock time and date at job start Mon Mar 30 2020 06:15:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52992 * 109.47599 * 2 1 4 4 O 1.42904 * 109.46945 * 239.99765 * 2 1 3 5 5 C 1.53002 * 109.46757 * 120.00222 * 2 1 3 6 6 C 1.53005 * 109.47216 * 59.99667 * 5 2 1 7 7 O 1.42901 * 109.46850 * 179.97438 * 6 5 2 8 8 C 1.35671 * 116.99781 * 179.97438 * 7 6 5 9 9 C 1.39316 * 119.81769 * 0.25218 * 8 7 6 10 10 C 1.36441 * 120.18282 * 180.25688 * 9 8 7 11 11 C 1.40835 * 119.81132 * 359.46844 * 10 9 8 12 12 C 1.41216 * 120.17483 * 180.29815 * 11 10 9 13 13 H 1.07997 * 120.00438 * 24.54125 * 12 11 10 14 14 C 1.39897 * 119.99576 * 204.53835 * 12 11 10 15 15 N 1.30875 * 120.00270 * 17.93189 * 14 12 11 16 16 Si 1.86801 * 119.99742 * 197.93556 * 14 12 11 17 17 H 1.48504 * 109.47145 * 359.97438 * 16 14 12 18 18 H 1.48494 * 109.47431 * 120.00060 * 16 14 12 19 19 H 1.48499 * 109.46661 * 240.00011 * 16 14 12 20 20 C 1.40823 * 119.64107 * 0.28458 * 11 10 9 21 21 C 1.36436 * 119.81465 * 359.97438 * 20 11 10 22 22 H 1.08997 * 109.46561 * 300.00454 * 1 2 3 23 23 H 1.09001 * 109.46513 * 59.99773 * 1 2 3 24 24 H 1.08989 * 109.47069 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47649 * 179.97438 * 3 2 1 26 26 H 1.09001 * 109.47270 * 300.00246 * 3 2 1 27 27 H 1.09004 * 109.47302 * 59.99833 * 3 2 1 28 28 H 0.96695 * 114.00037 * 180.02562 * 4 2 1 29 29 H 1.08997 * 109.47243 * 299.99975 * 5 2 1 30 30 H 1.09004 * 109.47004 * 179.97438 * 5 2 1 31 31 H 1.08997 * 109.46763 * 60.00015 * 6 5 2 32 32 H 1.08994 * 109.46860 * 299.99949 * 6 5 2 33 33 H 1.07997 * 119.91004 * 0.03109 * 9 8 7 34 34 H 1.08001 * 120.09133 * 179.74824 * 10 9 8 35 35 H 0.97001 * 120.00621 * 179.97438 * 15 14 12 36 36 H 1.08002 * 120.09699 * 180.02562 * 20 11 10 37 37 H 1.08004 * 119.90886 * 180.02562 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 8 2.0064 -0.6737 -1.1668 5 6 2.0400 -0.7213 1.2493 6 6 1.5299 -2.1638 1.2492 7 8 2.0067 -2.8376 2.4157 8 6 1.6417 -4.1352 2.5699 9 6 0.8413 -4.7486 1.6086 10 6 0.4655 -6.0516 1.7588 11 6 0.8982 -6.7799 2.8839 12 6 0.5190 -8.1308 3.0438 13 1 0.2559 -8.7237 2.1804 14 6 0.4843 -8.7009 4.3208 15 7 0.4537 -7.9327 5.3799 16 14 0.4817 -10.5589 4.5143 17 1 0.5194 -11.1963 3.1735 18 1 1.6735 -10.9770 5.2953 19 1 -0.7505 -10.9805 5.2278 20 6 1.7113 -6.1538 3.8483 21 6 2.0738 -4.8485 3.6858 22 1 -0.3632 0.5139 0.8900 23 1 -0.3632 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 3.1302 1.4424 0.0005 26 1 1.6769 1.9563 -0.8900 27 1 1.6769 1.9563 0.8900 28 1 2.9703 -0.7123 -1.2327 29 1 1.6767 -0.2075 2.1392 30 1 3.1300 -0.7217 1.2491 31 1 1.8932 -2.6776 0.3593 32 1 0.4399 -2.1637 1.2492 33 1 0.5145 -4.1901 0.7439 34 1 -0.1583 -6.5245 1.0147 35 1 0.4293 -8.3280 6.2654 36 1 2.0477 -6.7054 4.7137 37 1 2.6977 -4.3669 4.4243 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086234618.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:54 Heat of formation + Delta-G solvation = -88.023705 kcal Electronic energy + Delta-G solvation = -17816.954871 eV Core-core repulsion = 14944.709205 eV Total energy + Delta-G solvation = -2872.245665 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.15242 -38.19814 -36.28297 -33.42223 -32.93485 -30.19626 -29.31969 -28.72747 -27.53719 -24.83708 -23.48053 -20.90157 -20.50237 -20.13814 -17.33600 -17.07164 -16.40668 -15.75033 -15.16780 -14.83495 -14.73855 -14.26542 -13.90612 -13.09515 -12.90874 -12.77808 -12.39924 -12.20423 -12.11469 -12.05356 -11.92444 -11.77057 -11.38355 -11.08851 -10.94321 -10.84024 -10.67869 -10.42951 -10.06037 -9.85782 -9.74169 -9.30035 -8.98571 -7.60237 -6.98896 -6.69317 -4.22213 2.79869 2.99255 3.10597 3.16010 3.23294 3.89869 3.97811 4.22942 4.64628 4.68850 4.72140 5.02642 5.22108 5.35998 5.52782 5.57219 5.63658 5.70090 5.75462 5.78546 5.92867 5.99294 6.11915 6.15868 6.24712 6.29033 6.77251 7.02204 7.15293 7.22593 7.50838 7.55336 7.59654 7.84608 8.04108 8.24168 8.50188 8.69539 8.93321 9.02771 10.25029 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.059548 B = 0.003858 C = 0.003751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.095582 B = 7256.101552 C = 7462.463293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.129 3.871 3 C -0.176 4.176 4 O -0.560 6.560 5 C -0.143 4.143 6 C 0.071 3.929 7 O -0.333 6.333 8 C -0.006 4.006 9 C -0.167 4.167 10 C -0.197 4.197 11 C 0.087 3.913 12 C -0.464 4.464 13 H 0.076 0.924 14 C 0.075 3.925 15 N -0.800 5.800 16 Si 0.906 3.094 17 H -0.261 1.261 18 H -0.273 1.273 19 H -0.276 1.276 20 C -0.134 4.134 21 C -0.122 4.122 22 H 0.071 0.929 23 H 0.061 0.939 24 H 0.068 0.932 25 H 0.058 0.942 26 H 0.064 0.936 27 H 0.066 0.934 28 H 0.376 0.624 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.055 0.945 32 H 0.052 0.948 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.279 0.721 36 H 0.125 0.875 37 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.415 12.399 -6.350 14.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.089 3.911 3 C -0.233 4.233 4 O -0.366 6.366 5 C -0.181 4.181 6 C -0.005 4.005 7 O -0.249 6.249 8 C -0.050 4.050 9 C -0.186 4.186 10 C -0.217 4.217 11 C 0.085 3.915 12 C -0.494 4.494 13 H 0.095 0.905 14 C -0.142 4.142 15 N -0.426 5.426 16 Si 0.731 3.269 17 H -0.185 1.185 18 H -0.198 1.198 19 H -0.201 1.201 20 C -0.153 4.153 21 C -0.141 4.141 22 H 0.090 0.910 23 H 0.080 0.920 24 H 0.087 0.913 25 H 0.077 0.923 26 H 0.083 0.917 27 H 0.085 0.915 28 H 0.223 0.777 29 H 0.097 0.903 30 H 0.090 0.910 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.113 0.887 34 H 0.113 0.887 35 H 0.090 0.910 36 H 0.143 0.857 37 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 1.860 12.432 -6.076 13.961 hybrid contribution 0.376 -0.781 0.167 0.883 sum 2.236 11.650 -5.909 13.253 Atomic orbital electron populations 1.21844 0.92624 1.03407 1.02328 1.21151 0.95135 0.90487 0.84343 1.22466 1.01498 0.96544 1.02812 1.86564 1.26700 1.79531 1.43769 1.22210 1.01774 0.95414 0.98711 1.22395 0.98228 0.91521 0.88394 1.85778 1.72622 1.23653 1.42855 1.18592 1.05180 0.82885 0.98295 1.20439 1.02823 0.96731 0.98572 1.20584 1.05793 0.93703 1.01638 1.17596 0.89915 0.93136 0.90872 1.19491 1.40885 0.95839 0.93175 0.90537 1.25875 0.92389 1.00363 0.95554 1.69843 1.36185 1.37234 0.99337 0.86296 0.78462 0.82771 0.79367 1.18486 1.19770 1.20111 1.20964 0.99710 0.93224 1.01423 1.19837 1.03269 0.94940 0.96035 0.91011 0.91953 0.91285 0.92260 0.91733 0.91453 0.77688 0.90291 0.90977 0.92644 0.93029 0.88739 0.88749 0.91030 0.85705 0.88571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 8.49 37.16 0.32 -1.24 16 2 C 0.13 1.38 1.09 -90.62 -0.10 1.28 16 3 C -0.18 -1.46 8.81 37.15 0.33 -1.13 16 4 O -0.56 -6.45 12.31 -35.23 -0.43 -6.88 16 5 C -0.14 -1.80 4.82 -26.73 -0.13 -1.93 16 6 C 0.07 1.17 4.23 37.16 0.16 1.33 16 7 O -0.33 -7.02 10.12 -18.71 -0.19 -7.21 16 8 C -0.01 -0.15 6.71 -38.78 -0.26 -0.41 16 9 C -0.17 -3.93 8.96 -39.83 -0.36 -4.29 16 10 C -0.20 -5.00 9.74 -39.25 -0.38 -5.38 16 11 C 0.09 2.38 5.57 -106.81 -0.60 1.78 16 12 C -0.46 -12.53 9.04 -37.83 -0.34 -12.87 16 13 H 0.08 1.99 7.91 -52.49 -0.41 1.58 16 14 C 0.07 1.90 5.13 -17.34 -0.09 1.82 16 15 N -0.80 -20.97 10.96 55.55 0.61 -20.36 16 16 Si 0.91 18.90 29.60 -169.99 -5.03 13.87 16 17 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 18 H -0.27 -5.58 7.11 56.52 0.40 -5.17 16 19 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 20 C -0.13 -3.56 8.64 -39.25 -0.34 -3.90 16 21 C -0.12 -3.03 9.92 -39.83 -0.40 -3.42 16 22 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.07 0.84 6.43 -51.94 -0.33 0.50 16 25 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.38 3.05 9.04 45.56 0.41 3.46 16 29 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.06 0.94 7.18 -51.93 -0.37 0.57 16 32 H 0.05 0.86 5.94 -51.93 -0.31 0.55 16 33 H 0.09 1.98 6.27 -52.49 -0.33 1.65 16 34 H 0.09 2.24 8.06 -52.49 -0.42 1.81 16 35 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 36 H 0.13 3.39 6.16 -52.49 -0.32 3.06 16 37 H 0.10 2.19 8.06 -52.48 -0.42 1.77 16 LS Contribution 305.82 15.07 4.61 4.61 Total: -1.00 -29.66 305.82 -7.23 -36.90 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -4.61 Total: 7.43 kcal Atomic # 6 Polarization: -26.17 SS G_CDS: -2.19 Total: -28.36 kcal Atomic # 7 Polarization: -20.97 SS G_CDS: 0.61 Total: -20.36 kcal Atomic # 8 Polarization: -13.47 SS G_CDS: -0.62 Total: -14.09 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -5.03 Total: 13.87 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -29.66 -7.23 -36.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086234618.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.126 kcal (2) G-P(sol) polarization free energy of solvation -29.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds