Wall clock time and date at job start Mon Mar 30 2020 06:15:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52992 * 109.47599 * 2 1 4 4 O 1.42904 * 109.46945 * 239.99765 * 2 1 3 5 5 C 1.53002 * 109.46757 * 120.00222 * 2 1 3 6 6 C 1.53005 * 109.47216 * 59.99667 * 5 2 1 7 7 O 1.42901 * 109.46850 * 179.97438 * 6 5 2 8 8 C 1.35671 * 116.99781 * 179.97438 * 7 6 5 9 9 C 1.39316 * 119.81769 * 0.25218 * 8 7 6 10 10 C 1.36441 * 120.18282 * 180.25688 * 9 8 7 11 11 C 1.40835 * 119.81132 * 359.46844 * 10 9 8 12 12 C 1.41216 * 120.17483 * 180.29815 * 11 10 9 13 13 H 1.07997 * 120.00438 * 24.54125 * 12 11 10 14 14 C 1.39897 * 119.99576 * 204.53835 * 12 11 10 15 15 N 1.30875 * 120.00270 * 17.93189 * 14 12 11 16 16 Si 1.86801 * 119.99742 * 197.93556 * 14 12 11 17 17 H 1.48504 * 109.47145 * 359.97438 * 16 14 12 18 18 H 1.48494 * 109.47431 * 120.00060 * 16 14 12 19 19 H 1.48499 * 109.46661 * 240.00011 * 16 14 12 20 20 C 1.40823 * 119.64107 * 0.28458 * 11 10 9 21 21 C 1.36436 * 119.81465 * 359.97438 * 20 11 10 22 22 H 1.08997 * 109.46561 * 300.00454 * 1 2 3 23 23 H 1.09001 * 109.46513 * 59.99773 * 1 2 3 24 24 H 1.08989 * 109.47069 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47649 * 179.97438 * 3 2 1 26 26 H 1.09001 * 109.47270 * 300.00246 * 3 2 1 27 27 H 1.09004 * 109.47302 * 59.99833 * 3 2 1 28 28 H 0.96695 * 114.00037 * 180.02562 * 4 2 1 29 29 H 1.08997 * 109.47243 * 299.99975 * 5 2 1 30 30 H 1.09004 * 109.47004 * 179.97438 * 5 2 1 31 31 H 1.08997 * 109.46763 * 60.00015 * 6 5 2 32 32 H 1.08994 * 109.46860 * 299.99949 * 6 5 2 33 33 H 1.07997 * 119.91004 * 0.03109 * 9 8 7 34 34 H 1.08001 * 120.09133 * 179.74824 * 10 9 8 35 35 H 0.97001 * 120.00621 * 179.97438 * 15 14 12 36 36 H 1.08002 * 120.09699 * 180.02562 * 20 11 10 37 37 H 1.08004 * 119.90886 * 180.02562 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 8 2.0064 -0.6737 -1.1668 5 6 2.0400 -0.7213 1.2493 6 6 1.5299 -2.1638 1.2492 7 8 2.0067 -2.8376 2.4157 8 6 1.6417 -4.1352 2.5699 9 6 0.8413 -4.7486 1.6086 10 6 0.4655 -6.0516 1.7588 11 6 0.8982 -6.7799 2.8839 12 6 0.5190 -8.1308 3.0438 13 1 0.2559 -8.7237 2.1804 14 6 0.4843 -8.7009 4.3208 15 7 0.4537 -7.9327 5.3799 16 14 0.4817 -10.5589 4.5143 17 1 0.5194 -11.1963 3.1735 18 1 1.6735 -10.9770 5.2953 19 1 -0.7505 -10.9805 5.2278 20 6 1.7113 -6.1538 3.8483 21 6 2.0738 -4.8485 3.6858 22 1 -0.3632 0.5139 0.8900 23 1 -0.3632 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 3.1302 1.4424 0.0005 26 1 1.6769 1.9563 -0.8900 27 1 1.6769 1.9563 0.8900 28 1 2.9703 -0.7123 -1.2327 29 1 1.6767 -0.2075 2.1392 30 1 3.1300 -0.7217 1.2491 31 1 1.8932 -2.6776 0.3593 32 1 0.4399 -2.1637 1.2492 33 1 0.5145 -4.1901 0.7439 34 1 -0.1583 -6.5245 1.0147 35 1 0.4293 -8.3280 6.2654 36 1 2.0477 -6.7054 4.7137 37 1 2.6977 -4.3669 4.4243 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086234618.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:53 Heat of formation + Delta-G solvation = -106.368885 kcal Electronic energy + Delta-G solvation = -17817.750378 eV Core-core repulsion = 14944.709205 eV Total energy + Delta-G solvation = -2873.041172 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.65945 -39.41277 -38.03438 -35.25347 -33.96055 -31.85840 -31.07711 -30.27669 -28.30298 -26.72414 -24.83690 -22.69763 -22.29508 -21.13548 -19.25597 -18.74497 -17.41172 -17.01987 -16.96313 -16.31526 -15.79814 -15.75019 -15.39582 -14.75020 -14.31229 -14.05861 -14.02849 -13.74469 -13.40196 -13.16918 -13.04757 -12.85149 -12.75456 -12.65044 -12.46243 -12.29884 -12.25712 -11.70063 -11.60388 -11.39399 -11.17241 -10.92335 -10.86223 -9.57825 -8.93690 -8.60246 -6.23794 0.93458 1.00959 1.40182 1.50973 1.55654 2.23218 2.54763 2.71760 3.36374 3.68659 3.79795 3.86182 4.07081 4.18274 4.26794 4.29219 4.43586 4.45673 4.73042 4.80727 4.83354 4.88405 4.97720 5.00221 5.06460 5.13358 5.21064 5.27851 5.28870 5.35246 5.57325 5.64191 5.88478 6.04525 6.25462 6.55867 6.79296 6.86685 6.94142 7.08694 8.36646 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.059548 B = 0.003858 C = 0.003751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.095582 B = 7256.101552 C = 7462.463293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.132 3.868 3 C -0.170 4.170 4 O -0.577 6.577 5 C -0.136 4.136 6 C 0.064 3.936 7 O -0.339 6.339 8 C -0.001 4.001 9 C -0.166 4.166 10 C -0.210 4.210 11 C 0.056 3.944 12 C -0.500 4.500 13 H 0.075 0.925 14 C 0.034 3.966 15 N -0.830 5.830 16 Si 0.984 3.016 17 H -0.259 1.259 18 H -0.264 1.264 19 H -0.266 1.266 20 C -0.152 4.152 21 C -0.132 4.132 22 H 0.084 0.916 23 H 0.069 0.931 24 H 0.049 0.951 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.076 0.924 28 H 0.389 0.611 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.052 0.948 32 H 0.050 0.950 33 H 0.120 0.880 34 H 0.104 0.896 35 H 0.288 0.712 36 H 0.112 0.888 37 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.654 13.261 -6.812 15.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.091 3.909 3 C -0.227 4.227 4 O -0.386 6.386 5 C -0.173 4.173 6 C -0.011 4.011 7 O -0.255 6.255 8 C -0.045 4.045 9 C -0.185 4.185 10 C -0.230 4.230 11 C 0.054 3.946 12 C -0.529 4.529 13 H 0.093 0.907 14 C -0.180 4.180 15 N -0.457 5.457 16 Si 0.804 3.196 17 H -0.182 1.182 18 H -0.189 1.189 19 H -0.191 1.191 20 C -0.171 4.171 21 C -0.151 4.151 22 H 0.103 0.897 23 H 0.088 0.912 24 H 0.068 0.932 25 H 0.088 0.912 26 H 0.088 0.912 27 H 0.095 0.905 28 H 0.239 0.761 29 H 0.103 0.897 30 H 0.099 0.901 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.138 0.862 34 H 0.122 0.878 35 H 0.099 0.901 36 H 0.130 0.870 37 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 2.109 13.324 -6.552 14.996 hybrid contribution 0.305 -0.900 0.252 0.984 sum 2.414 12.424 -6.299 14.137 Atomic orbital electron populations 1.21911 0.92933 1.02431 1.03417 1.21179 0.94992 0.91597 0.83086 1.22402 1.02215 0.94562 1.03528 1.86538 1.28182 1.79862 1.44005 1.22240 1.02318 0.92635 1.00142 1.22710 0.98386 0.93427 0.86594 1.85781 1.72666 1.22176 1.44902 1.18690 1.04102 0.84093 0.97637 1.20680 1.02224 0.96247 0.99315 1.20805 1.06130 0.94518 1.01525 1.17949 0.90782 0.93977 0.91919 1.19740 1.42755 0.96319 0.94129 0.90654 1.26750 0.91261 1.05371 0.94642 1.69888 1.36277 1.39494 1.00064 0.85141 0.78902 0.76145 0.79375 1.18242 1.18853 1.19115 1.20909 1.00696 0.94117 1.01388 1.20028 1.03510 0.94619 0.96965 0.89711 0.91201 0.93241 0.91157 0.91226 0.90538 0.76120 0.89692 0.90075 0.92971 0.93138 0.86173 0.87819 0.90141 0.86995 0.87046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.94 8.49 71.99 0.61 -2.33 16 2 C 0.13 2.51 1.09 -10.79 -0.01 2.50 16 3 C -0.17 -2.29 8.81 71.98 0.63 -1.66 16 4 O -0.58 -12.15 12.31 -148.98 -1.83 -13.98 16 5 C -0.14 -3.10 4.82 30.60 0.15 -2.95 16 6 C 0.06 2.03 4.23 71.98 0.30 2.34 16 7 O -0.34 -13.89 10.12 -89.88 -0.91 -14.80 16 8 C 0.00 -0.06 6.71 22.79 0.15 0.09 16 9 C -0.17 -7.75 8.96 22.11 0.20 -7.56 16 10 C -0.21 -10.77 9.74 22.49 0.22 -10.55 16 11 C 0.06 3.13 5.57 -21.28 -0.12 3.01 16 12 C -0.50 -27.61 9.04 23.40 0.21 -27.39 16 13 H 0.08 4.01 7.91 -2.91 -0.02 3.99 16 14 C 0.03 1.73 5.13 85.24 0.44 2.17 16 15 N -0.83 -44.22 10.96 21.82 0.24 -43.98 16 16 Si 0.98 38.78 29.60 68.60 2.03 40.81 16 17 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 18 H -0.26 -9.96 7.11 99.48 0.71 -9.26 16 19 H -0.27 -10.03 7.11 99.48 0.71 -9.33 16 20 C -0.15 -8.29 8.64 22.48 0.19 -8.10 16 21 C -0.13 -6.63 9.92 22.11 0.22 -6.41 16 22 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 23 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 24 H 0.05 1.15 6.43 -2.39 -0.02 1.13 16 25 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.08 0.91 8.14 -2.38 -0.02 0.89 16 28 H 0.39 5.49 9.04 -74.06 -0.67 4.82 16 29 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.05 1.70 7.18 -2.39 -0.02 1.68 16 32 H 0.05 1.63 5.94 -2.39 -0.01 1.61 16 33 H 0.12 4.89 6.27 -2.91 -0.02 4.87 16 34 H 0.10 4.97 8.06 -2.91 -0.02 4.94 16 35 H 0.29 13.77 8.30 -92.71 -0.77 13.01 16 36 H 0.11 6.30 6.16 -2.91 -0.02 6.28 16 37 H 0.11 5.09 8.06 -2.91 -0.02 5.07 16 Total: -1.00 -63.69 305.82 3.12 -60.57 By element: Atomic # 1 Polarization: 27.83 SS G_CDS: 0.39 Total: 28.23 kcal Atomic # 6 Polarization: -60.05 SS G_CDS: 3.20 Total: -56.85 kcal Atomic # 7 Polarization: -44.22 SS G_CDS: 0.24 Total: -43.98 kcal Atomic # 8 Polarization: -26.04 SS G_CDS: -2.74 Total: -28.78 kcal Atomic # 14 Polarization: 38.78 SS G_CDS: 2.03 Total: 40.81 kcal Total: -63.69 3.12 -60.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086234618.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.794 kcal (2) G-P(sol) polarization free energy of solvation -63.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds