Wall clock time and date at job start Mon Mar 30 2020 06:56:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42899 * 109.47516 * 2 1 4 4 C 1.42893 * 114.00577 * 180.02562 * 3 2 1 5 5 C 1.52993 * 109.47647 * 179.97438 * 4 3 2 6 6 C 1.53003 * 109.47545 * 179.97438 * 5 4 3 7 7 O 1.42892 * 109.47161 * 179.97438 * 6 5 4 8 8 C 1.35676 * 116.99828 * 180.02562 * 7 6 5 9 9 C 1.39314 * 119.81822 * 0.25190 * 8 7 6 10 10 C 1.36432 * 120.18227 * 180.25822 * 9 8 7 11 11 C 1.40835 * 119.81478 * 359.46739 * 10 9 8 12 12 C 1.41216 * 120.18043 * 180.29829 * 11 10 9 13 13 H 1.08000 * 120.00010 * 24.54163 * 12 11 10 14 14 C 1.39897 * 119.99842 * 204.54407 * 12 11 10 15 15 N 1.30875 * 120.00270 * 17.92084 * 14 12 11 16 16 Si 1.86801 * 119.99742 * 197.92451 * 14 12 11 17 17 H 1.48496 * 109.47062 * 89.99872 * 16 14 12 18 18 H 1.48500 * 109.47007 * 210.00030 * 16 14 12 19 19 H 1.48499 * 109.47008 * 329.99607 * 16 14 12 20 20 C 1.40833 * 119.64165 * 0.28134 * 11 10 9 21 21 C 1.36440 * 119.81129 * 0.02562 * 20 11 10 22 22 H 1.09003 * 109.47289 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47625 * 300.00792 * 1 2 3 24 24 H 1.09002 * 109.46891 * 60.00219 * 1 2 3 25 25 H 1.08999 * 109.47625 * 239.99208 * 2 1 3 26 26 H 1.09002 * 109.46891 * 119.99781 * 2 1 3 27 27 H 1.08997 * 109.47389 * 59.99426 * 4 3 2 28 28 H 1.09009 * 109.46923 * 299.99771 * 4 3 2 29 29 H 1.08997 * 109.47080 * 59.99377 * 5 4 3 30 30 H 1.09000 * 109.47048 * 300.00113 * 5 4 3 31 31 H 1.09004 * 109.46434 * 59.99785 * 6 5 4 32 32 H 1.08997 * 109.46681 * 300.00225 * 6 5 4 33 33 H 1.07997 * 119.90740 * 0.03002 * 9 8 7 34 34 H 1.07999 * 120.09181 * 179.74972 * 10 9 8 35 35 H 0.97001 * 120.00621 * 179.97438 * 15 14 12 36 36 H 1.08002 * 120.09678 * 180.02562 * 20 11 10 37 37 H 1.07994 * 119.91031 * 180.02562 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4308 1.4601 -0.0006 5 6 3.8254 2.9383 -0.0012 6 6 5.3507 3.0591 -0.0012 7 8 5.7191 4.4397 -0.0023 8 6 7.0459 4.7231 -0.0030 9 6 7.9759 3.6858 -0.0079 10 6 9.3119 3.9622 -0.0033 11 6 9.7500 5.3007 -0.0049 12 6 11.1310 5.5957 -0.0065 13 1 11.8364 4.8761 -0.3950 14 6 11.5853 6.8200 0.4952 15 7 10.8128 7.5361 1.2719 16 14 13.2945 7.4327 0.0563 17 1 13.2249 8.2489 -1.1823 18 1 13.8229 8.2639 1.1678 19 1 14.1945 6.2725 -0.1652 20 6 8.8033 6.3434 -0.0053 21 6 7.4709 6.0499 -0.0036 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 3.8333 0.9767 -0.8907 28 1 3.8340 0.9764 0.8893 29 1 3.4229 3.4221 0.8887 30 1 3.4223 3.4216 -0.8911 31 1 5.7534 2.5751 -0.8910 32 1 5.7533 2.5759 0.8890 33 1 7.6382 2.6599 -0.0116 34 1 10.0315 3.1569 -0.0030 35 1 11.1279 8.3849 1.6201 36 1 9.1312 7.3725 -0.0070 37 1 6.7436 6.8483 -0.0043 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087325312.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:48 Heat of formation + Delta-G solvation = -82.903012 kcal Electronic energy + Delta-G solvation = -17144.582318 eV Core-core repulsion = 14272.558702 eV Total energy + Delta-G solvation = -2872.023616 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.89464 -38.19839 -36.46111 -33.60991 -32.93821 -30.93020 -29.65948 -28.96420 -25.75500 -24.48782 -23.01836 -21.99896 -20.63324 -20.37418 -17.31385 -17.20531 -16.61751 -16.57129 -15.41068 -15.20804 -14.54095 -14.39154 -13.93494 -13.92633 -13.03171 -12.83886 -12.44266 -12.38656 -12.15680 -11.97998 -11.77604 -11.54623 -11.33874 -11.13974 -11.06787 -10.86868 -10.74550 -10.54128 -9.90950 -9.80067 -9.77935 -9.32763 -9.01763 -7.63171 -7.02227 -6.71317 -4.24739 2.78660 2.96367 3.09241 3.12541 3.22369 3.29995 3.95886 4.29978 4.62624 4.76949 4.90544 4.91381 5.09276 5.15326 5.22544 5.37570 5.44092 5.60212 5.63347 5.64640 5.68311 5.83306 6.09324 6.13541 6.13948 6.26973 6.74639 6.99149 7.02061 7.12497 7.19827 7.48116 7.56864 7.80729 8.01536 8.21506 8.46671 8.66531 8.90865 8.99890 10.23081 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.085913 B = 0.003055 C = 0.002982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 325.834686 B = 9163.318063 C = 9387.795661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.056 3.944 3 O -0.389 6.389 4 C 0.068 3.932 5 C -0.117 4.117 6 C 0.073 3.927 7 O -0.327 6.327 8 C -0.008 4.008 9 C -0.167 4.167 10 C -0.198 4.198 11 C 0.087 3.913 12 C -0.464 4.464 13 H 0.076 0.924 14 C 0.074 3.926 15 N -0.799 5.799 16 Si 0.908 3.092 17 H -0.268 1.268 18 H -0.279 1.279 19 H -0.263 1.263 20 C -0.134 4.134 21 C -0.120 4.120 22 H 0.069 0.931 23 H 0.063 0.937 24 H 0.063 0.937 25 H 0.048 0.952 26 H 0.048 0.952 27 H 0.051 0.949 28 H 0.051 0.949 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.280 0.720 36 H 0.126 0.874 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.808 -9.957 -1.738 15.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.309 6.309 4 C -0.009 4.009 5 C -0.155 4.155 6 C -0.004 4.004 7 O -0.243 6.243 8 C -0.051 4.051 9 C -0.186 4.186 10 C -0.218 4.218 11 C 0.085 3.915 12 C -0.494 4.494 13 H 0.095 0.905 14 C -0.142 4.142 15 N -0.425 5.425 16 Si 0.733 3.267 17 H -0.193 1.193 18 H -0.204 1.204 19 H -0.187 1.187 20 C -0.153 4.153 21 C -0.139 4.139 22 H 0.088 0.912 23 H 0.082 0.918 24 H 0.082 0.918 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.112 0.888 34 H 0.113 0.887 35 H 0.091 0.909 36 H 0.144 0.856 37 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -12.075 -9.451 -1.590 15.416 hybrid contribution 1.117 -0.209 -0.050 1.138 sum -10.958 -9.660 -1.640 14.699 Atomic orbital electron populations 1.21744 0.93781 1.02142 1.03203 1.22454 0.95577 0.83898 1.00084 1.87870 1.21205 1.26347 1.95458 1.22316 0.81077 0.97078 1.00423 1.21354 0.94668 0.94890 1.04567 1.22216 0.93738 0.83825 1.00610 1.85796 1.23114 1.24115 1.91304 1.18596 0.80412 0.93965 1.12138 1.20411 0.94293 0.95964 1.07943 1.20569 0.93566 0.96313 1.11372 1.17603 0.93674 0.90486 0.89718 1.19467 0.92620 1.00861 1.36417 0.90541 1.25884 0.99534 0.96196 0.92624 1.69833 1.37725 1.12226 1.22709 0.86318 0.82015 0.79405 0.78986 1.19327 1.20400 1.18730 1.20983 0.90460 1.00114 1.03756 1.19847 0.96035 0.92291 1.05707 0.91171 0.91823 0.91827 0.93420 0.93413 0.93075 0.93052 0.90297 0.90312 0.93097 0.93066 0.88820 0.88734 0.90920 0.85646 0.88436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 10.28 37.16 0.38 -0.74 16 2 C 0.06 0.50 6.66 37.16 0.25 0.75 16 3 O -0.39 -4.71 10.34 -35.23 -0.36 -5.08 16 4 C 0.07 0.77 5.94 37.15 0.22 0.99 16 5 C -0.12 -1.58 5.95 -26.73 -0.16 -1.74 16 6 C 0.07 1.17 4.73 37.16 0.18 1.34 16 7 O -0.33 -6.85 10.12 -18.73 -0.19 -7.04 16 8 C -0.01 -0.19 6.71 -38.78 -0.26 -0.45 16 9 C -0.17 -3.84 8.96 -39.83 -0.36 -4.19 16 10 C -0.20 -4.93 9.74 -39.25 -0.38 -5.31 16 11 C 0.09 2.36 5.57 -106.80 -0.60 1.76 16 12 C -0.46 -12.38 9.04 -37.83 -0.34 -12.73 16 13 H 0.08 1.96 7.91 -52.49 -0.41 1.55 16 14 C 0.07 1.88 5.13 -17.34 -0.09 1.79 16 15 N -0.80 -20.83 10.96 55.55 0.61 -20.22 16 16 Si 0.91 18.79 29.60 -169.99 -5.03 13.76 16 17 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 18 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 19 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 20 C -0.13 -3.53 8.64 -39.25 -0.34 -3.87 16 21 C -0.12 -2.95 9.92 -39.83 -0.40 -3.35 16 22 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 23 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 24 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.05 0.53 8.14 -51.92 -0.42 0.11 16 29 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.05 0.78 7.63 -51.93 -0.40 0.38 16 32 H 0.05 0.80 7.66 -51.93 -0.40 0.40 16 33 H 0.09 1.85 6.27 -52.49 -0.33 1.52 16 34 H 0.09 2.19 8.06 -52.49 -0.42 1.76 16 35 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 36 H 0.13 3.38 6.16 -52.49 -0.32 3.05 16 37 H 0.10 2.21 8.06 -52.49 -0.42 1.79 16 LS Contribution 312.95 15.07 4.72 4.72 Total: -1.00 -28.82 312.95 -7.80 -36.62 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -5.65 Total: 2.99 kcal Atomic # 6 Polarization: -23.85 SS G_CDS: -1.89 Total: -25.74 kcal Atomic # 7 Polarization: -20.83 SS G_CDS: 0.61 Total: -20.22 kcal Atomic # 8 Polarization: -11.57 SS G_CDS: -0.55 Total: -12.12 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -5.03 Total: 13.76 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -28.82 -7.80 -36.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087325312.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.287 kcal (2) G-P(sol) polarization free energy of solvation -28.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds