Wall clock time and date at job start Mon Mar 30 2020 06:56:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42899 * 109.47516 * 2 1 4 4 C 1.42893 * 114.00577 * 180.02562 * 3 2 1 5 5 C 1.52993 * 109.47647 * 179.97438 * 4 3 2 6 6 C 1.53003 * 109.47545 * 179.97438 * 5 4 3 7 7 O 1.42892 * 109.47161 * 179.97438 * 6 5 4 8 8 C 1.35676 * 116.99828 * 180.02562 * 7 6 5 9 9 C 1.39314 * 119.81822 * 0.25190 * 8 7 6 10 10 C 1.36432 * 120.18227 * 180.25822 * 9 8 7 11 11 C 1.40835 * 119.81478 * 359.46739 * 10 9 8 12 12 C 1.41216 * 120.18043 * 180.29829 * 11 10 9 13 13 H 1.08000 * 120.00010 * 24.54163 * 12 11 10 14 14 C 1.39897 * 119.99842 * 204.54407 * 12 11 10 15 15 N 1.30875 * 120.00270 * 17.92084 * 14 12 11 16 16 Si 1.86801 * 119.99742 * 197.92451 * 14 12 11 17 17 H 1.48496 * 109.47062 * 89.99872 * 16 14 12 18 18 H 1.48500 * 109.47007 * 210.00030 * 16 14 12 19 19 H 1.48499 * 109.47008 * 329.99607 * 16 14 12 20 20 C 1.40833 * 119.64165 * 0.28134 * 11 10 9 21 21 C 1.36440 * 119.81129 * 0.02562 * 20 11 10 22 22 H 1.09003 * 109.47289 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47625 * 300.00792 * 1 2 3 24 24 H 1.09002 * 109.46891 * 60.00219 * 1 2 3 25 25 H 1.08999 * 109.47625 * 239.99208 * 2 1 3 26 26 H 1.09002 * 109.46891 * 119.99781 * 2 1 3 27 27 H 1.08997 * 109.47389 * 59.99426 * 4 3 2 28 28 H 1.09009 * 109.46923 * 299.99771 * 4 3 2 29 29 H 1.08997 * 109.47080 * 59.99377 * 5 4 3 30 30 H 1.09000 * 109.47048 * 300.00113 * 5 4 3 31 31 H 1.09004 * 109.46434 * 59.99785 * 6 5 4 32 32 H 1.08997 * 109.46681 * 300.00225 * 6 5 4 33 33 H 1.07997 * 119.90740 * 0.03002 * 9 8 7 34 34 H 1.07999 * 120.09181 * 179.74972 * 10 9 8 35 35 H 0.97001 * 120.00621 * 179.97438 * 15 14 12 36 36 H 1.08002 * 120.09678 * 180.02562 * 20 11 10 37 37 H 1.07994 * 119.91031 * 180.02562 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4308 1.4601 -0.0006 5 6 3.8254 2.9383 -0.0012 6 6 5.3507 3.0591 -0.0012 7 8 5.7191 4.4397 -0.0023 8 6 7.0459 4.7231 -0.0030 9 6 7.9759 3.6858 -0.0079 10 6 9.3119 3.9622 -0.0033 11 6 9.7500 5.3007 -0.0049 12 6 11.1310 5.5957 -0.0065 13 1 11.8364 4.8761 -0.3950 14 6 11.5853 6.8200 0.4952 15 7 10.8128 7.5361 1.2719 16 14 13.2945 7.4327 0.0563 17 1 13.2249 8.2489 -1.1823 18 1 13.8229 8.2639 1.1678 19 1 14.1945 6.2725 -0.1652 20 6 8.8033 6.3434 -0.0053 21 6 7.4709 6.0499 -0.0036 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 3.8333 0.9767 -0.8907 28 1 3.8340 0.9764 0.8893 29 1 3.4229 3.4221 0.8887 30 1 3.4223 3.4216 -0.8911 31 1 5.7534 2.5751 -0.8910 32 1 5.7533 2.5759 0.8890 33 1 7.6382 2.6599 -0.0116 34 1 10.0315 3.1569 -0.0030 35 1 11.1279 8.3849 1.6201 36 1 9.1312 7.3725 -0.0070 37 1 6.7436 6.8483 -0.0043 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087325312.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:47 Heat of formation + Delta-G solvation = -98.475768 kcal Electronic energy + Delta-G solvation = -17145.257603 eV Core-core repulsion = 14272.558702 eV Total energy + Delta-G solvation = -2872.698901 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.56602 -39.12630 -38.20138 -35.32212 -34.16672 -31.91081 -31.39790 -30.82549 -27.20166 -26.12249 -23.68559 -23.40720 -22.48927 -21.92275 -19.23006 -18.75308 -17.57684 -17.55215 -17.04450 -16.56857 -16.14083 -15.73569 -15.36775 -14.92042 -14.75991 -14.19746 -14.02576 -13.79448 -13.55763 -13.30294 -12.97197 -12.81913 -12.64223 -12.57190 -12.37234 -12.29767 -11.99927 -11.93224 -11.66674 -11.45544 -11.18017 -10.87911 -10.56982 -9.56370 -8.93320 -8.59552 -6.23086 0.94523 1.02572 1.40305 1.53241 1.53555 2.22778 2.26203 2.72376 3.06794 3.69798 3.88808 4.05570 4.14342 4.17393 4.27677 4.36029 4.36722 4.39845 4.47894 4.49899 4.53373 4.81897 4.88949 5.00796 5.04395 5.06992 5.12958 5.22190 5.27607 5.29434 5.59060 5.64678 5.88709 6.05672 6.24143 6.26771 6.56626 6.80424 6.94956 7.09681 8.37062 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.085913 B = 0.003055 C = 0.002982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 325.834686 B = 9163.318063 C = 9387.795661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.048 3.952 3 O -0.413 6.413 4 C 0.071 3.929 5 C -0.109 4.109 6 C 0.065 3.935 7 O -0.339 6.339 8 C -0.002 4.002 9 C -0.164 4.164 10 C -0.209 4.209 11 C 0.054 3.946 12 C -0.498 4.498 13 H 0.077 0.923 14 C 0.032 3.968 15 N -0.831 5.831 16 Si 0.984 3.016 17 H -0.263 1.263 18 H -0.269 1.269 19 H -0.258 1.258 20 C -0.154 4.154 21 C -0.134 4.134 22 H 0.092 0.908 23 H 0.057 0.943 24 H 0.057 0.943 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.130 0.870 34 H 0.107 0.893 35 H 0.288 0.712 36 H 0.111 0.889 37 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.059 -11.439 -1.973 16.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.028 4.028 3 O -0.333 6.333 4 C -0.005 4.005 5 C -0.147 4.147 6 C -0.011 4.011 7 O -0.255 6.255 8 C -0.045 4.045 9 C -0.183 4.183 10 C -0.228 4.228 11 C 0.052 3.948 12 C -0.528 4.528 13 H 0.095 0.905 14 C -0.182 4.182 15 N -0.458 5.458 16 Si 0.805 3.195 17 H -0.188 1.188 18 H -0.194 1.194 19 H -0.182 1.182 20 C -0.173 4.173 21 C -0.153 4.153 22 H 0.110 0.890 23 H 0.076 0.924 24 H 0.076 0.924 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.148 0.852 34 H 0.125 0.875 35 H 0.098 0.902 36 H 0.128 0.872 37 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -12.354 -10.955 -1.823 16.612 hybrid contribution 1.011 0.150 0.037 1.023 sum -11.343 -10.805 -1.786 15.767 Atomic orbital electron populations 1.21777 0.92912 1.03446 1.02639 1.22699 0.96377 0.82619 1.01109 1.87835 1.21395 1.28431 1.95665 1.22261 0.81194 0.95364 1.01699 1.21271 0.92720 0.96711 1.04005 1.22540 0.95489 0.81399 1.01626 1.85788 1.21404 1.27394 1.90964 1.18680 0.81800 0.93655 1.10409 1.20722 0.93388 0.97689 1.06494 1.20823 0.94881 0.95905 1.11210 1.17971 0.94283 0.91646 0.90873 1.19722 0.92831 1.02262 1.37994 0.90509 1.26763 1.03799 0.95780 0.91834 1.69888 1.39813 1.12778 1.23323 0.85180 0.76657 0.78847 0.78854 1.18784 1.19401 1.18165 1.20913 0.91370 0.99515 1.05519 1.20028 0.95711 0.93693 1.05819 0.88951 0.92414 0.92363 0.92323 0.92398 0.91707 0.91840 0.91000 0.90816 0.91796 0.92081 0.85239 0.87495 0.90189 0.87159 0.87321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 10.28 71.98 0.74 -1.21 16 2 C 0.05 0.75 6.66 71.98 0.48 1.23 16 3 O -0.41 -9.22 10.34 -148.98 -1.54 -10.76 16 4 C 0.07 1.44 5.94 71.98 0.43 1.87 16 5 C -0.11 -2.75 5.95 30.59 0.18 -2.57 16 6 C 0.06 1.93 4.73 71.98 0.34 2.27 16 7 O -0.34 -13.72 10.12 -89.93 -0.91 -14.63 16 8 C 0.00 -0.08 6.71 22.79 0.15 0.08 16 9 C -0.16 -7.28 8.96 22.11 0.20 -7.09 16 10 C -0.21 -10.30 9.74 22.48 0.22 -10.08 16 11 C 0.05 2.99 5.57 -21.28 -0.12 2.88 16 12 C -0.50 -27.14 9.04 23.40 0.21 -26.93 16 13 H 0.08 4.01 7.91 -2.91 -0.02 3.99 16 14 C 0.03 1.64 5.13 85.24 0.44 2.08 16 15 N -0.83 -44.23 10.96 21.82 0.24 -43.99 16 16 Si 0.98 38.58 29.60 68.60 2.03 40.61 16 17 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 18 H -0.27 -10.06 7.11 99.48 0.71 -9.35 16 19 H -0.26 -9.79 7.11 99.48 0.71 -9.09 16 20 C -0.15 -8.36 8.64 22.48 0.19 -8.16 16 21 C -0.13 -6.66 9.92 22.11 0.22 -6.44 16 22 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 23 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 24 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 25 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 29 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.06 1.76 7.63 -2.38 -0.02 1.74 16 32 H 0.06 1.72 7.66 -2.39 -0.02 1.70 16 33 H 0.13 4.71 6.27 -2.91 -0.02 4.69 16 34 H 0.11 4.88 8.06 -2.91 -0.02 4.86 16 35 H 0.29 13.82 8.30 -92.71 -0.77 13.05 16 36 H 0.11 6.21 6.16 -2.91 -0.02 6.19 16 37 H 0.11 5.00 8.06 -2.91 -0.02 4.98 16 Total: -1.00 -62.11 312.95 4.54 -57.57 By element: Atomic # 1 Polarization: 22.25 SS G_CDS: 1.03 Total: 23.28 kcal Atomic # 6 Polarization: -55.76 SS G_CDS: 3.68 Total: -52.08 kcal Atomic # 7 Polarization: -44.23 SS G_CDS: 0.24 Total: -43.99 kcal Atomic # 8 Polarization: -22.94 SS G_CDS: -2.45 Total: -25.40 kcal Atomic # 14 Polarization: 38.58 SS G_CDS: 2.03 Total: 40.61 kcal Total: -62.11 4.54 -57.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087325312.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.906 kcal (2) G-P(sol) polarization free energy of solvation -62.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds