Wall clock time and date at job start Mon Mar 30 2020 05:56:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45200 * 109.47313 * 2 1 4 4 C 1.34221 * 117.00292 * 179.97438 * 3 2 1 5 5 O 1.20832 * 119.99722 * 359.97438 * 4 3 2 6 6 C 1.50694 * 120.00340 * 180.02562 * 4 3 2 7 7 C 1.53003 * 109.37944 * 300.22078 * 6 4 3 8 8 C 1.53003 * 109.46886 * 59.77300 * 7 6 4 9 9 C 1.50645 * 109.38149 * 59.99714 * 6 4 3 10 10 C 1.32718 * 120.21400 * 85.31034 * 9 6 4 11 11 C 1.47074 * 119.94232 * 1.19453 * 10 9 6 12 12 C 1.32732 * 119.93711 * 17.64271 * 11 10 9 13 13 C 1.50640 * 120.21098 * 1.49876 * 12 11 10 14 14 H 1.09006 * 109.37691 * 204.66935 * 13 12 11 15 15 C 1.50701 * 109.37987 * 85.00663 * 13 12 11 16 16 H 1.08001 * 119.99610 * 239.99260 * 15 13 12 17 17 C 1.37874 * 120.00416 * 59.99952 * 15 13 12 18 18 N 1.31522 * 119.99662 * 359.97438 * 17 15 13 19 19 Si 1.86793 * 120.00292 * 179.97438 * 17 15 13 20 20 H 1.48507 * 109.47044 * 89.99777 * 19 17 15 21 21 H 1.48501 * 109.47300 * 209.99800 * 19 17 15 22 22 H 1.48497 * 109.47082 * 330.00033 * 19 17 15 23 23 H 1.09003 * 109.47016 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47259 * 300.00104 * 1 2 3 25 25 H 1.09004 * 109.47033 * 60.00444 * 1 2 3 26 26 H 1.08998 * 109.47259 * 239.99896 * 2 1 3 27 27 H 1.09005 * 109.46686 * 119.99970 * 2 1 3 28 28 H 1.09000 * 109.47371 * 179.77753 * 7 6 4 29 29 H 1.09006 * 109.46920 * 299.77730 * 7 6 4 30 30 H 1.09005 * 109.46526 * 180.02562 * 8 7 6 31 31 H 1.08991 * 109.47361 * 300.00434 * 8 7 6 32 32 H 1.08998 * 109.47099 * 60.00779 * 8 7 6 33 33 H 1.08009 * 119.89120 * 265.28335 * 9 6 4 34 34 H 1.08000 * 120.03275 * 181.17936 * 10 9 6 35 35 H 1.08002 * 120.03329 * 197.62180 * 11 10 9 36 36 H 1.08002 * 119.88990 * 181.21593 * 12 11 10 37 37 H 0.97001 * 119.99336 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0808 0.5865 0.0015 6 6 3.9208 2.9373 0.0012 7 6 3.4440 3.6845 -1.2460 8 6 1.9157 3.7585 -1.2431 9 6 3.4548 3.6705 1.2319 10 6 4.1145 3.5413 2.3762 11 6 5.3197 2.7005 2.4378 12 6 5.9477 2.3600 1.3192 13 6 5.4497 2.8597 -0.0119 14 1 5.7703 2.1757 -0.7978 15 6 6.0225 4.2278 -0.2785 16 1 5.3628 5.0717 -0.4171 17 6 7.3885 4.4024 -0.3456 18 7 8.1917 3.3748 -0.1764 19 14 8.0983 6.0981 -0.6768 20 1 8.3215 6.8016 0.6119 21 1 9.3901 5.9621 -1.3967 22 1 7.1478 6.8788 -1.5087 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8901 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 3.8566 4.6934 -1.2451 29 1 3.7804 3.1552 -2.1375 30 1 1.5761 4.2904 -2.1318 31 1 1.5032 2.7497 -1.2439 32 1 1.5793 4.2878 -0.3516 33 1 2.5812 4.3039 1.1827 34 1 3.7669 4.0532 3.2613 35 1 5.6935 2.3608 3.3924 36 1 6.8212 1.7264 1.3638 37 1 9.1528 3.4977 -0.2232 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095931693.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:56:59 Heat of formation + Delta-G solvation = -61.334693 kcal Electronic energy + Delta-G solvation = -19364.368522 eV Core-core repulsion = 16493.280179 eV Total energy + Delta-G solvation = -2871.088343 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.36495 -37.73594 -35.84249 -33.36770 -32.68333 -31.36397 -29.54255 -28.41539 -25.65520 -23.44908 -22.75093 -21.62518 -20.74420 -19.40435 -17.69319 -16.63556 -16.19869 -15.64777 -15.29489 -14.59100 -14.13810 -13.88706 -13.43203 -13.18345 -12.88863 -12.64156 -12.44768 -12.19528 -11.98338 -11.73343 -11.48678 -11.19803 -11.00566 -10.80588 -10.69830 -10.46075 -10.16663 -10.12014 -9.87804 -9.67856 -9.61307 -9.28886 -8.79063 -8.46934 -7.03276 -6.06786 -4.11952 2.47687 2.98594 3.24446 3.29295 3.35592 3.38089 4.20874 4.41571 5.06009 5.11721 5.26162 5.33195 5.43397 5.50769 5.55647 5.81334 5.84962 5.87769 5.95624 6.03524 6.07134 6.25340 6.32457 6.56047 6.57293 6.62937 6.78427 6.93596 7.09320 7.15769 7.23588 7.42357 7.64499 7.84412 7.94814 8.20216 8.23148 8.49245 8.89400 9.50561 11.00635 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.030056 B = 0.007509 C = 0.007062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.365810 B = 3728.113495 C = 3963.974348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.053 3.947 3 O -0.351 6.351 4 C 0.472 3.528 5 O -0.506 6.506 6 C 0.002 3.998 7 C -0.101 4.101 8 C -0.165 4.165 9 C -0.167 4.167 10 C -0.083 4.083 11 C -0.237 4.237 12 C -0.013 4.013 13 C 0.083 3.917 14 H 0.048 0.952 15 C -0.503 4.503 16 H 0.069 0.931 17 C 0.064 3.936 18 N -0.887 5.887 19 Si 0.896 3.104 20 H -0.280 1.280 21 H -0.287 1.287 22 H -0.272 1.272 23 H 0.072 0.928 24 H 0.064 0.936 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.091 0.909 29 H 0.060 0.940 30 H 0.044 0.956 31 H 0.070 0.930 32 H 0.054 0.946 33 H 0.110 0.890 34 H 0.101 0.899 35 H 0.092 0.908 36 H 0.103 0.897 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.507 -2.301 0.458 12.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.021 4.021 3 O -0.269 6.269 4 C 0.316 3.684 5 O -0.392 6.392 6 C 0.001 3.999 7 C -0.139 4.139 8 C -0.222 4.222 9 C -0.185 4.185 10 C -0.102 4.102 11 C -0.255 4.255 12 C -0.032 4.032 13 C 0.065 3.935 14 H 0.066 0.934 15 C -0.541 4.541 16 H 0.087 0.913 17 C -0.139 4.139 18 N -0.524 5.524 19 Si 0.724 3.276 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.197 1.197 23 H 0.091 0.909 24 H 0.083 0.917 25 H 0.083 0.917 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.109 0.891 29 H 0.079 0.921 30 H 0.064 0.936 31 H 0.089 0.911 32 H 0.073 0.927 33 H 0.128 0.872 34 H 0.119 0.881 35 H 0.110 0.890 36 H 0.121 0.879 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.105 -2.681 0.447 12.406 hybrid contribution 0.724 0.716 0.083 1.022 sum -11.381 -1.965 0.530 11.561 Atomic orbital electron populations 1.21769 0.93266 1.02313 1.03240 1.22902 0.94896 0.82266 1.02085 1.86677 1.25686 1.30274 1.84285 1.24448 0.79652 0.93248 0.71097 1.90604 1.60311 1.43173 1.45108 1.19717 0.98179 0.86166 0.95839 1.21493 0.94679 1.02232 0.95461 1.22162 0.96564 1.02725 1.00708 1.22645 1.00546 1.02424 0.92871 1.21510 0.94629 0.97323 0.96687 1.21145 0.99897 1.07030 0.97421 1.23581 0.94616 0.89727 0.95281 1.17926 0.84937 0.97673 0.92979 0.93420 1.20984 0.91443 0.92702 1.48926 0.91310 1.24991 0.97167 0.96891 0.94856 1.69967 1.03598 1.29693 1.49136 0.86520 0.78546 0.84214 0.78366 1.20637 1.21235 1.19704 0.90911 0.91675 0.91705 0.91809 0.91820 0.89053 0.92149 0.93649 0.91149 0.92722 0.87246 0.88070 0.89005 0.87876 0.92781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 10.29 37.16 0.38 -1.12 16 2 C 0.05 0.74 6.19 37.16 0.23 0.97 16 3 O -0.35 -6.05 7.02 -39.23 -0.28 -6.32 16 4 C 0.47 9.77 6.25 36.00 0.23 10.00 16 5 O -0.51 -11.80 14.93 -18.76 -0.28 -12.08 16 6 C 0.00 0.04 0.28 -156.79 -0.04 0.00 16 7 C -0.10 -1.90 4.52 -26.73 -0.12 -2.02 16 8 C -0.16 -2.52 9.14 37.16 0.34 -2.18 16 9 C -0.17 -3.29 7.80 -36.22 -0.28 -3.57 16 10 C -0.08 -1.69 10.09 -37.88 -0.38 -2.07 16 11 C -0.24 -5.35 10.10 -37.88 -0.38 -5.74 16 12 C -0.01 -0.34 7.18 -36.22 -0.26 -0.60 16 13 C 0.08 2.09 1.28 -92.90 -0.12 1.97 16 14 H 0.05 1.34 7.75 -51.93 -0.40 0.94 16 15 C -0.50 -13.20 7.42 -34.44 -0.26 -13.45 16 16 H 0.07 1.75 6.00 -52.49 -0.31 1.43 16 17 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 18 N -0.89 -25.13 12.26 55.43 0.68 -24.45 16 19 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 23 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.89 8.13 -51.93 -0.42 0.46 16 27 H 0.06 0.91 8.13 -51.93 -0.42 0.49 16 28 H 0.09 1.78 6.04 -51.93 -0.31 1.47 16 29 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.07 1.08 5.30 -51.93 -0.28 0.80 16 32 H 0.05 0.80 6.29 -51.93 -0.33 0.47 16 33 H 0.11 1.88 6.31 -52.48 -0.33 1.55 16 34 H 0.10 1.75 8.06 -52.49 -0.42 1.33 16 35 H 0.09 1.91 8.06 -52.49 -0.42 1.48 16 36 H 0.10 2.73 7.90 -52.49 -0.41 2.32 16 37 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 297.90 15.07 4.49 4.49 Total: -1.00 -29.42 297.90 -6.49 -35.90 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -5.32 Total: 2.75 kcal Atomic # 6 Polarization: -15.43 SS G_CDS: -0.76 Total: -16.20 kcal Atomic # 7 Polarization: -25.13 SS G_CDS: 0.68 Total: -24.45 kcal Atomic # 8 Polarization: -17.85 SS G_CDS: -0.56 Total: -18.41 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -29.42 -6.49 -35.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095931693.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.430 kcal (2) G-P(sol) polarization free energy of solvation -29.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds