Wall clock time and date at job start Mon Mar 30 2020 05:56:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45200 * 109.47313 * 2 1 4 4 C 1.34221 * 117.00292 * 179.97438 * 3 2 1 5 5 O 1.20832 * 119.99722 * 359.97438 * 4 3 2 6 6 C 1.50694 * 120.00340 * 180.02562 * 4 3 2 7 7 C 1.53003 * 109.37944 * 300.22078 * 6 4 3 8 8 C 1.53003 * 109.46886 * 59.77300 * 7 6 4 9 9 C 1.50645 * 109.38149 * 59.99714 * 6 4 3 10 10 C 1.32718 * 120.21400 * 85.31034 * 9 6 4 11 11 C 1.47074 * 119.94232 * 1.19453 * 10 9 6 12 12 C 1.32732 * 119.93711 * 17.64271 * 11 10 9 13 13 C 1.50640 * 120.21098 * 1.49876 * 12 11 10 14 14 H 1.09006 * 109.37691 * 204.66935 * 13 12 11 15 15 C 1.50701 * 109.37987 * 85.00663 * 13 12 11 16 16 H 1.08001 * 119.99610 * 239.99260 * 15 13 12 17 17 C 1.37874 * 120.00416 * 59.99952 * 15 13 12 18 18 N 1.31522 * 119.99662 * 359.97438 * 17 15 13 19 19 Si 1.86793 * 120.00292 * 179.97438 * 17 15 13 20 20 H 1.48507 * 109.47044 * 89.99777 * 19 17 15 21 21 H 1.48501 * 109.47300 * 209.99800 * 19 17 15 22 22 H 1.48497 * 109.47082 * 330.00033 * 19 17 15 23 23 H 1.09003 * 109.47016 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47259 * 300.00104 * 1 2 3 25 25 H 1.09004 * 109.47033 * 60.00444 * 1 2 3 26 26 H 1.08998 * 109.47259 * 239.99896 * 2 1 3 27 27 H 1.09005 * 109.46686 * 119.99970 * 2 1 3 28 28 H 1.09000 * 109.47371 * 179.77753 * 7 6 4 29 29 H 1.09006 * 109.46920 * 299.77730 * 7 6 4 30 30 H 1.09005 * 109.46526 * 180.02562 * 8 7 6 31 31 H 1.08991 * 109.47361 * 300.00434 * 8 7 6 32 32 H 1.08998 * 109.47099 * 60.00779 * 8 7 6 33 33 H 1.08009 * 119.89120 * 265.28335 * 9 6 4 34 34 H 1.08000 * 120.03275 * 181.17936 * 10 9 6 35 35 H 1.08002 * 120.03329 * 197.62180 * 11 10 9 36 36 H 1.08002 * 119.88990 * 181.21593 * 12 11 10 37 37 H 0.97001 * 119.99336 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0808 0.5865 0.0015 6 6 3.9208 2.9373 0.0012 7 6 3.4440 3.6845 -1.2460 8 6 1.9157 3.7585 -1.2431 9 6 3.4548 3.6705 1.2319 10 6 4.1145 3.5413 2.3762 11 6 5.3197 2.7005 2.4378 12 6 5.9477 2.3600 1.3192 13 6 5.4497 2.8597 -0.0119 14 1 5.7703 2.1757 -0.7978 15 6 6.0225 4.2278 -0.2785 16 1 5.3628 5.0717 -0.4171 17 6 7.3885 4.4024 -0.3456 18 7 8.1917 3.3748 -0.1764 19 14 8.0983 6.0981 -0.6768 20 1 8.3215 6.8016 0.6119 21 1 9.3901 5.9621 -1.3967 22 1 7.1478 6.8788 -1.5087 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8901 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 3.8566 4.6934 -1.2451 29 1 3.7804 3.1552 -2.1375 30 1 1.5761 4.2904 -2.1318 31 1 1.5032 2.7497 -1.2439 32 1 1.5793 4.2878 -0.3516 33 1 2.5812 4.3039 1.1827 34 1 3.7669 4.0532 3.2613 35 1 5.6935 2.3608 3.3924 36 1 6.8212 1.7264 1.3638 37 1 9.1528 3.4977 -0.2232 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095931693.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:56:58 Heat of formation + Delta-G solvation = -76.783148 kcal Electronic energy + Delta-G solvation = -19365.038418 eV Core-core repulsion = 16493.280179 eV Total energy + Delta-G solvation = -2871.758238 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.97229 -39.35220 -37.42949 -34.99068 -34.60533 -32.42013 -31.35425 -30.00585 -27.50487 -24.86771 -24.28622 -23.03663 -22.43667 -21.00361 -19.48532 -18.19045 -17.76380 -17.25998 -17.09388 -16.46616 -15.72363 -15.21557 -14.91172 -14.76660 -14.47531 -14.14505 -13.94977 -13.55534 -13.54792 -12.94249 -12.84484 -12.77175 -12.66855 -12.48206 -12.27161 -12.08691 -11.88441 -11.70740 -11.42967 -11.33040 -11.24164 -10.99150 -10.59690 -10.52769 -8.81884 -8.10092 -6.23580 0.77604 1.34580 1.44205 1.44555 1.54512 1.80540 2.39639 2.54562 3.20967 3.85707 3.97107 4.02091 4.06156 4.17764 4.26686 4.38971 4.49759 4.55837 4.59932 4.80163 4.85733 4.98366 4.98456 5.11576 5.18854 5.24938 5.32100 5.36129 5.47567 5.49083 5.58078 5.68548 5.79705 5.92778 6.12758 6.20385 6.41202 6.85600 6.91513 7.42727 8.96092 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.030056 B = 0.007509 C = 0.007062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.365810 B = 3728.113495 C = 3963.974348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.042 3.958 3 O -0.340 6.340 4 C 0.476 3.524 5 O -0.544 6.544 6 C -0.005 4.005 7 C -0.099 4.099 8 C -0.154 4.154 9 C -0.154 4.154 10 C -0.102 4.102 11 C -0.220 4.220 12 C -0.055 4.055 13 C 0.087 3.913 14 H -0.003 1.003 15 C -0.505 4.505 16 H 0.079 0.921 17 C 0.009 3.991 18 N -0.924 5.924 19 Si 0.960 3.040 20 H -0.278 1.278 21 H -0.289 1.289 22 H -0.257 1.257 23 H 0.098 0.902 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.060 0.940 27 H 0.057 0.943 28 H 0.085 0.915 29 H 0.044 0.956 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.148 0.852 34 H 0.141 0.859 35 H 0.106 0.894 36 H 0.069 0.931 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.573 -0.470 0.972 15.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.031 4.031 3 O -0.257 6.257 4 C 0.320 3.680 5 O -0.433 6.433 6 C -0.006 4.006 7 C -0.137 4.137 8 C -0.211 4.211 9 C -0.171 4.171 10 C -0.120 4.120 11 C -0.238 4.238 12 C -0.074 4.074 13 C 0.069 3.931 14 H 0.015 0.985 15 C -0.543 4.543 16 H 0.097 0.903 17 C -0.190 4.190 18 N -0.563 5.563 19 Si 0.785 3.215 20 H -0.203 1.203 21 H -0.215 1.215 22 H -0.181 1.181 23 H 0.117 0.883 24 H 0.090 0.910 25 H 0.091 0.909 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.103 0.897 29 H 0.063 0.937 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.166 0.834 34 H 0.159 0.841 35 H 0.124 0.876 36 H 0.087 0.913 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -15.215 -0.840 0.957 15.268 hybrid contribution 1.612 0.029 -0.077 1.614 sum -13.602 -0.812 0.880 13.655 Atomic orbital electron populations 1.21783 0.89554 1.04271 1.03942 1.23295 0.97675 0.80441 1.01734 1.86649 1.23259 1.32369 1.83426 1.24316 0.80662 0.92630 0.70349 1.90595 1.61516 1.44243 1.46954 1.19667 0.95585 0.87285 0.98086 1.21477 0.97541 1.00999 0.93650 1.22080 0.93166 1.03277 1.02582 1.23001 1.01219 1.01379 0.91540 1.21819 0.93807 0.97722 0.98632 1.21522 0.99973 1.05337 0.96970 1.23355 0.95115 0.92323 0.96597 1.17698 0.88101 0.95986 0.91333 0.98520 1.21322 0.91703 0.93418 1.47865 0.90322 1.25853 0.97801 1.00385 0.94947 1.70140 1.03577 1.31901 1.50710 0.85513 0.77773 0.79909 0.78297 1.20348 1.21550 1.18078 0.88345 0.91039 0.90864 0.92157 0.92435 0.89691 0.93687 0.91376 0.91223 0.91231 0.83431 0.84118 0.87558 0.91296 0.93130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 10.29 71.98 0.74 -1.60 16 2 C 0.04 1.12 6.19 71.98 0.45 1.57 16 3 O -0.34 -11.14 7.02 -51.33 -0.36 -11.50 16 4 C 0.48 19.74 6.25 71.23 0.45 20.18 16 5 O -0.54 -26.47 14.93 21.95 0.33 -26.14 16 6 C -0.01 -0.22 0.28 -53.66 -0.02 -0.23 16 7 C -0.10 -3.61 4.52 30.60 0.14 -3.47 16 8 C -0.15 -4.18 9.14 71.98 0.66 -3.52 16 9 C -0.15 -5.63 7.80 24.50 0.19 -5.44 16 10 C -0.10 -3.87 10.09 23.42 0.24 -3.63 16 11 C -0.22 -9.93 10.10 23.42 0.24 -9.70 16 12 C -0.06 -2.90 7.18 24.49 0.18 -2.72 16 13 C 0.09 4.56 1.28 -12.27 -0.02 4.54 16 14 H 0.00 -0.20 7.75 -2.38 -0.02 -0.22 16 15 C -0.51 -26.95 7.42 25.60 0.19 -26.76 16 16 H 0.08 3.94 6.00 -2.91 -0.02 3.92 16 17 C 0.01 0.49 5.30 84.65 0.45 0.94 16 18 N -0.92 -54.95 12.26 21.45 0.26 -54.68 16 19 Si 0.96 43.23 29.54 68.60 2.03 45.26 16 20 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 21 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 22 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 23 H 0.10 1.20 8.14 -2.39 -0.02 1.19 16 24 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.07 1.14 8.14 -2.38 -0.02 1.13 16 26 H 0.06 1.64 8.13 -2.39 -0.02 1.62 16 27 H 0.06 1.60 8.13 -2.38 -0.02 1.58 16 28 H 0.08 3.18 6.04 -2.39 -0.01 3.16 16 29 H 0.04 1.73 8.14 -2.38 -0.02 1.71 16 30 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 31 H 0.07 1.91 5.30 -2.39 -0.01 1.90 16 32 H 0.07 1.68 6.29 -2.39 -0.02 1.67 16 33 H 0.15 4.30 6.31 -2.91 -0.02 4.28 16 34 H 0.14 4.23 8.06 -2.91 -0.02 4.21 16 35 H 0.11 4.37 8.06 -2.91 -0.02 4.35 16 36 H 0.07 3.98 7.90 -2.91 -0.02 3.96 16 37 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 Total: -1.00 -67.08 297.90 7.18 -59.90 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: 1.05 Total: 17.02 kcal Atomic # 6 Polarization: -33.72 SS G_CDS: 3.88 Total: -29.84 kcal Atomic # 7 Polarization: -54.95 SS G_CDS: 0.26 Total: -54.68 kcal Atomic # 8 Polarization: -37.61 SS G_CDS: -0.03 Total: -37.64 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Total: -67.08 7.18 -59.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095931693.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.887 kcal (2) G-P(sol) polarization free energy of solvation -67.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds