Wall clock time and date at job start Mon Mar 30 2020 05:57:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45200 * 109.46933 * 2 1 4 4 C 1.34237 * 116.99544 * 180.02562 * 3 2 1 5 5 O 1.20820 * 120.00497 * 0.02562 * 4 3 2 6 6 C 1.50698 * 119.99436 * 180.02562 * 4 3 2 7 7 C 1.52995 * 109.29403 * 60.27764 * 6 4 3 8 8 C 1.52999 * 109.46921 * 299.72077 * 7 6 4 9 9 C 1.50649 * 109.38275 * 300.54957 * 6 4 3 10 10 C 1.32723 * 120.21257 * 274.72342 * 9 6 4 11 11 C 1.47072 * 119.94252 * 358.77533 * 10 9 6 12 12 C 1.32719 * 119.94362 * 342.35991 * 11 10 9 13 13 C 1.50647 * 120.21066 * 358.78048 * 12 11 10 14 14 H 1.09000 * 109.38210 * 154.93438 * 13 12 11 15 15 C 1.50694 * 109.38099 * 274.71654 * 13 12 11 16 16 H 1.08000 * 120.00563 * 120.00024 * 15 13 12 17 17 C 1.37885 * 119.99902 * 299.99860 * 15 13 12 18 18 N 1.31518 * 119.99792 * 179.72330 * 17 15 13 19 19 Si 1.86795 * 120.00009 * 0.02562 * 17 15 13 20 20 H 1.48501 * 109.47088 * 89.99795 * 19 17 15 21 21 H 1.48495 * 109.47293 * 209.99997 * 19 17 15 22 22 H 1.48507 * 109.47015 * 329.99955 * 19 17 15 23 23 H 1.08995 * 109.47030 * 60.00190 * 1 2 3 24 24 H 1.09001 * 109.46993 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46671 * 299.99845 * 1 2 3 26 26 H 1.08999 * 109.47305 * 239.99840 * 2 1 3 27 27 H 1.08999 * 109.47030 * 120.00331 * 2 1 3 28 28 H 1.09006 * 109.47046 * 59.71687 * 7 6 4 29 29 H 1.08996 * 109.47427 * 179.72328 * 7 6 4 30 30 H 1.09000 * 109.47323 * 59.99887 * 8 7 6 31 31 H 1.09002 * 109.47145 * 179.97438 * 8 7 6 32 32 H 1.08996 * 109.47582 * 300.00090 * 8 7 6 33 33 H 1.07998 * 119.88724 * 94.71947 * 9 6 4 34 34 H 1.07998 * 120.02563 * 178.79714 * 10 9 6 35 35 H 1.08001 * 120.02732 * 162.34053 * 11 10 9 36 36 H 1.07998 * 119.89816 * 178.79894 * 12 11 10 37 37 H 0.97000 * 119.99468 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0808 0.5867 -0.0015 6 6 3.9207 2.9374 0.0000 7 6 3.4529 3.6774 1.2547 8 6 1.9252 3.7611 1.2576 9 6 3.4437 3.6762 -1.2232 10 6 4.0928 3.5516 -2.3741 11 6 5.2974 2.7112 -2.4503 12 6 5.9357 2.3661 -1.3391 13 6 5.4465 2.8550 -0.0008 14 1 5.7701 2.1637 0.7773 15 6 6.0211 4.2209 0.2732 16 1 5.3627 5.0638 0.4228 17 6 7.3877 4.3946 0.3329 18 7 7.8893 5.5877 0.5666 19 14 8.5266 2.9370 0.0734 20 1 8.8547 2.8159 -1.3699 21 1 9.7760 3.1406 0.8497 22 1 7.8545 1.6954 0.5340 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5139 0.8899 28 1 3.7889 3.1387 2.1408 29 1 3.8719 4.6836 1.2606 30 1 1.5061 2.7549 1.2518 31 1 1.5919 4.2879 2.1517 32 1 1.5891 4.2997 0.3716 33 1 2.5707 4.3091 -1.1632 34 1 3.7370 4.0673 -3.2538 35 1 5.6619 2.3750 -3.4097 36 1 6.8089 1.7329 -1.3944 37 1 8.8506 5.7097 0.6089 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095931696.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:06 Heat of formation + Delta-G solvation = -54.770929 kcal Electronic energy + Delta-G solvation = -19439.671429 eV Core-core repulsion = 16568.867712 eV Total energy + Delta-G solvation = -2870.803717 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.54330 -37.95979 -35.98657 -33.52443 -32.66560 -31.44842 -30.18612 -28.61987 -25.81502 -23.48000 -22.77544 -21.62792 -20.91163 -19.59457 -18.03327 -16.81684 -16.32682 -15.77875 -15.65563 -14.37999 -14.26512 -13.99100 -13.65015 -13.54215 -12.98734 -12.76236 -12.71901 -12.32695 -12.16639 -11.80451 -11.57986 -11.35682 -11.13151 -10.85179 -10.63477 -10.42292 -10.29832 -10.05971 -9.98099 -9.87711 -9.72110 -9.44422 -8.95084 -8.59474 -7.29319 -6.12937 -4.11790 2.19934 2.81935 3.10045 3.28313 3.37679 3.41594 3.94427 4.39772 4.98522 5.03467 5.16883 5.22883 5.31873 5.36463 5.45643 5.65441 5.73368 5.80193 5.87992 5.92831 5.98203 5.98584 6.12472 6.35340 6.42121 6.57421 6.68330 6.73270 6.82420 6.93010 7.06010 7.06825 7.37528 7.51141 7.64383 7.87591 8.30174 8.43713 8.88948 9.47503 10.98431 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.028092 B = 0.008175 C = 0.007727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.471639 B = 3424.067969 C = 3622.998417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.053 3.947 3 O -0.349 6.349 4 C 0.473 3.527 5 O -0.508 6.508 6 C 0.009 3.991 7 C -0.103 4.103 8 C -0.165 4.165 9 C -0.146 4.146 10 C -0.097 4.097 11 C -0.185 4.185 12 C -0.092 4.092 13 C 0.053 3.947 14 H 0.047 0.953 15 C -0.498 4.498 16 H 0.088 0.912 17 C 0.078 3.922 18 N -0.893 5.893 19 Si 0.867 3.133 20 H -0.276 1.276 21 H -0.291 1.291 22 H -0.260 1.260 23 H 0.065 0.935 24 H 0.073 0.927 25 H 0.065 0.935 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.061 0.939 29 H 0.098 0.902 30 H 0.069 0.931 31 H 0.047 0.953 32 H 0.055 0.945 33 H 0.116 0.884 34 H 0.109 0.891 35 H 0.099 0.901 36 H 0.095 0.905 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.738 -7.231 -1.620 14.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.021 4.021 3 O -0.267 6.267 4 C 0.316 3.684 5 O -0.395 6.395 6 C 0.008 3.992 7 C -0.140 4.140 8 C -0.221 4.221 9 C -0.164 4.164 10 C -0.115 4.115 11 C -0.203 4.203 12 C -0.111 4.111 13 C 0.034 3.966 14 H 0.065 0.935 15 C -0.535 4.535 16 H 0.106 0.894 17 C -0.124 4.124 18 N -0.530 5.530 19 Si 0.695 3.305 20 H -0.202 1.202 21 H -0.218 1.218 22 H -0.184 1.184 23 H 0.084 0.916 24 H 0.092 0.908 25 H 0.084 0.916 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.116 0.884 30 H 0.087 0.913 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.134 0.866 34 H 0.127 0.873 35 H 0.117 0.883 36 H 0.112 0.888 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -12.365 -7.443 -1.586 14.519 hybrid contribution 1.009 -0.885 -0.391 1.398 sum -11.356 -8.327 -1.978 14.220 Atomic orbital electron populations 1.21772 0.93121 1.02395 1.03341 1.22924 0.95024 0.82056 1.02112 1.86680 1.25404 1.30452 1.84146 1.24383 0.79810 0.93109 0.71069 1.90591 1.60390 1.43188 1.45317 1.19485 0.96862 0.86410 0.96432 1.21529 0.94902 1.02727 0.94871 1.22153 0.96383 1.02648 1.00955 1.22761 1.00218 1.00962 0.92442 1.21504 0.94747 0.98041 0.97192 1.21215 0.98436 1.03449 0.97208 1.23727 0.97072 0.93385 0.96873 1.18279 0.87902 0.98425 0.91984 0.93464 1.20865 0.92253 0.92259 1.48129 0.89392 1.24910 0.97995 0.95365 0.94167 1.69864 1.12700 1.21547 1.48928 0.87084 0.80589 0.84259 0.78556 1.20236 1.21765 1.18450 0.91614 0.90844 0.91615 0.91791 0.91747 0.92042 0.88354 0.91262 0.93378 0.92640 0.86605 0.87338 0.88291 0.88752 0.92488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 10.29 37.16 0.38 -1.03 16 2 C 0.05 0.70 6.19 37.16 0.23 0.93 16 3 O -0.35 -5.71 7.05 -39.27 -0.28 -5.99 16 4 C 0.47 9.32 6.24 36.00 0.22 9.55 16 5 O -0.51 -11.25 14.91 -18.74 -0.28 -11.53 16 6 C 0.01 0.19 0.28 -156.94 -0.04 0.14 16 7 C -0.10 -1.91 4.53 -26.73 -0.12 -2.03 16 8 C -0.16 -2.46 9.14 37.16 0.34 -2.12 16 9 C -0.15 -2.77 7.79 -36.22 -0.28 -3.05 16 10 C -0.10 -1.86 10.10 -37.88 -0.38 -2.25 16 11 C -0.18 -3.91 10.10 -37.88 -0.38 -4.29 16 12 C -0.09 -2.16 6.35 -36.22 -0.23 -2.39 16 13 C 0.05 1.27 0.89 -93.06 -0.08 1.19 16 14 H 0.05 1.21 6.75 -51.93 -0.35 0.86 16 15 C -0.50 -13.36 8.00 -34.44 -0.28 -13.64 16 16 H 0.09 2.47 6.22 -52.49 -0.33 2.15 16 17 C 0.08 2.21 5.45 -17.82 -0.10 2.11 16 18 N -0.89 -26.56 13.96 55.43 0.77 -25.79 16 19 Si 0.87 21.77 24.49 -169.99 -4.16 17.61 16 20 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 21 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 22 H -0.26 -6.42 6.44 56.52 0.36 -6.05 16 23 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.06 0.86 8.13 -51.93 -0.42 0.44 16 27 H 0.06 0.84 8.13 -51.93 -0.42 0.42 16 28 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.10 1.97 6.02 -51.93 -0.31 1.66 16 30 H 0.07 1.02 5.32 -51.93 -0.28 0.75 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.79 6.26 -51.93 -0.33 0.46 16 33 H 0.12 1.91 6.28 -52.49 -0.33 1.58 16 34 H 0.11 1.77 8.06 -52.49 -0.42 1.34 16 35 H 0.10 1.86 8.06 -52.49 -0.42 1.43 16 36 H 0.09 2.21 5.86 -52.49 -0.31 1.90 16 37 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 290.53 15.07 4.38 4.38 Total: -1.00 -30.53 290.53 -5.49 -36.02 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -5.20 Total: 2.18 kcal Atomic # 6 Polarization: -16.16 SS G_CDS: -0.72 Total: -16.88 kcal Atomic # 7 Polarization: -26.56 SS G_CDS: 0.77 Total: -25.79 kcal Atomic # 8 Polarization: -16.96 SS G_CDS: -0.56 Total: -17.52 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.16 Total: 17.61 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -30.53 -5.49 -36.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095931696.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.752 kcal (2) G-P(sol) polarization free energy of solvation -30.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds