Wall clock time and date at job start Mon Mar 30 2020 05:57:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45200 * 109.46933 * 2 1 4 4 C 1.34237 * 116.99544 * 180.02562 * 3 2 1 5 5 O 1.20820 * 120.00497 * 0.02562 * 4 3 2 6 6 C 1.50698 * 119.99436 * 180.02562 * 4 3 2 7 7 C 1.52995 * 109.29403 * 60.27764 * 6 4 3 8 8 C 1.52999 * 109.46921 * 299.72077 * 7 6 4 9 9 C 1.50649 * 109.38275 * 300.54957 * 6 4 3 10 10 C 1.32723 * 120.21257 * 274.72342 * 9 6 4 11 11 C 1.47072 * 119.94252 * 358.77533 * 10 9 6 12 12 C 1.32719 * 119.94362 * 342.35991 * 11 10 9 13 13 C 1.50647 * 120.21066 * 358.78048 * 12 11 10 14 14 H 1.09000 * 109.38210 * 154.93438 * 13 12 11 15 15 C 1.50694 * 109.38099 * 274.71654 * 13 12 11 16 16 H 1.08000 * 120.00563 * 120.00024 * 15 13 12 17 17 C 1.37885 * 119.99902 * 299.99860 * 15 13 12 18 18 N 1.31518 * 119.99792 * 179.72330 * 17 15 13 19 19 Si 1.86795 * 120.00009 * 0.02562 * 17 15 13 20 20 H 1.48501 * 109.47088 * 89.99795 * 19 17 15 21 21 H 1.48495 * 109.47293 * 209.99997 * 19 17 15 22 22 H 1.48507 * 109.47015 * 329.99955 * 19 17 15 23 23 H 1.08995 * 109.47030 * 60.00190 * 1 2 3 24 24 H 1.09001 * 109.46993 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46671 * 299.99845 * 1 2 3 26 26 H 1.08999 * 109.47305 * 239.99840 * 2 1 3 27 27 H 1.08999 * 109.47030 * 120.00331 * 2 1 3 28 28 H 1.09006 * 109.47046 * 59.71687 * 7 6 4 29 29 H 1.08996 * 109.47427 * 179.72328 * 7 6 4 30 30 H 1.09000 * 109.47323 * 59.99887 * 8 7 6 31 31 H 1.09002 * 109.47145 * 179.97438 * 8 7 6 32 32 H 1.08996 * 109.47582 * 300.00090 * 8 7 6 33 33 H 1.07998 * 119.88724 * 94.71947 * 9 6 4 34 34 H 1.07998 * 120.02563 * 178.79714 * 10 9 6 35 35 H 1.08001 * 120.02732 * 162.34053 * 11 10 9 36 36 H 1.07998 * 119.89816 * 178.79894 * 12 11 10 37 37 H 0.97000 * 119.99468 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0808 0.5867 -0.0015 6 6 3.9207 2.9374 0.0000 7 6 3.4529 3.6774 1.2547 8 6 1.9252 3.7611 1.2576 9 6 3.4437 3.6762 -1.2232 10 6 4.0928 3.5516 -2.3741 11 6 5.2974 2.7112 -2.4503 12 6 5.9357 2.3661 -1.3391 13 6 5.4465 2.8550 -0.0008 14 1 5.7701 2.1637 0.7773 15 6 6.0211 4.2209 0.2732 16 1 5.3627 5.0638 0.4228 17 6 7.3877 4.3946 0.3329 18 7 7.8893 5.5877 0.5666 19 14 8.5266 2.9370 0.0734 20 1 8.8547 2.8159 -1.3699 21 1 9.7760 3.1406 0.8497 22 1 7.8545 1.6954 0.5340 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5139 0.8899 28 1 3.7889 3.1387 2.1408 29 1 3.8719 4.6836 1.2606 30 1 1.5061 2.7549 1.2518 31 1 1.5919 4.2879 2.1517 32 1 1.5891 4.2997 0.3716 33 1 2.5707 4.3091 -1.1632 34 1 3.7370 4.0673 -3.2538 35 1 5.6619 2.3750 -3.4097 36 1 6.8089 1.7329 -1.3944 37 1 8.8506 5.7097 0.6089 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095931696.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:06 Heat of formation + Delta-G solvation = -72.313985 kcal Electronic energy + Delta-G solvation = -19440.432153 eV Core-core repulsion = 16568.867712 eV Total energy + Delta-G solvation = -2871.564441 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.07355 -39.49983 -37.47277 -35.04693 -34.69303 -32.45649 -31.94464 -30.14379 -27.59899 -24.74862 -24.35392 -23.00544 -22.54833 -21.13399 -19.81982 -18.31266 -17.82955 -17.39457 -17.29332 -16.24123 -15.91196 -15.39578 -15.26413 -14.95339 -14.52420 -14.23911 -14.09152 -13.74363 -13.56296 -13.01428 -12.95137 -12.83012 -12.64064 -12.45119 -12.41190 -12.07118 -11.89419 -11.68729 -11.57269 -11.40056 -11.31715 -11.08671 -10.81536 -10.66175 -8.95580 -8.30228 -6.30241 0.57277 1.25454 1.26655 1.32302 1.40618 1.73859 2.27979 2.37733 3.06159 3.71685 3.88676 3.91301 4.04824 4.11967 4.16288 4.35244 4.39109 4.39892 4.51880 4.68867 4.77370 4.89632 4.98128 5.01298 5.04393 5.16667 5.20367 5.24571 5.36510 5.39339 5.45556 5.57619 5.69485 5.78517 5.87519 6.21812 6.29838 6.72648 6.85191 7.32142 8.84069 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.028092 B = 0.008175 C = 0.007727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.471639 B = 3424.067969 C = 3622.998417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.043 3.957 3 O -0.340 6.340 4 C 0.479 3.521 5 O -0.539 6.539 6 C 0.000 4.000 7 C -0.101 4.101 8 C -0.154 4.154 9 C -0.141 4.141 10 C -0.115 4.115 11 C -0.168 4.168 12 C -0.136 4.136 13 C 0.055 3.945 14 H 0.021 0.979 15 C -0.486 4.486 16 H 0.068 0.932 17 C 0.030 3.970 18 N -0.935 5.935 19 Si 0.916 3.084 20 H -0.269 1.269 21 H -0.290 1.290 22 H -0.261 1.261 23 H 0.070 0.930 24 H 0.098 0.902 25 H 0.071 0.929 26 H 0.060 0.940 27 H 0.062 0.938 28 H 0.050 0.950 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.147 0.853 34 H 0.145 0.855 35 H 0.124 0.876 36 H 0.087 0.913 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.196 -7.905 -2.708 17.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.030 4.030 3 O -0.257 6.257 4 C 0.324 3.676 5 O -0.429 6.429 6 C -0.001 4.001 7 C -0.139 4.139 8 C -0.211 4.211 9 C -0.159 4.159 10 C -0.133 4.133 11 C -0.186 4.186 12 C -0.155 4.155 13 C 0.036 3.964 14 H 0.039 0.961 15 C -0.523 4.523 16 H 0.086 0.914 17 C -0.169 4.169 18 N -0.576 5.576 19 Si 0.743 3.257 20 H -0.195 1.195 21 H -0.216 1.216 22 H -0.186 1.186 23 H 0.089 0.911 24 H 0.117 0.883 25 H 0.090 0.910 26 H 0.079 0.921 27 H 0.081 0.919 28 H 0.069 0.931 29 H 0.096 0.904 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.165 0.835 34 H 0.163 0.837 35 H 0.142 0.858 36 H 0.105 0.895 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -14.856 -8.128 -2.680 17.145 hybrid contribution 1.627 -0.720 -0.050 1.780 sum -13.229 -8.848 -2.730 16.148 Atomic orbital electron populations 1.21792 0.89743 1.04280 1.03911 1.23313 0.97563 0.80200 1.01957 1.86648 1.23119 1.32610 1.83320 1.24070 0.80804 0.92234 0.70495 1.90581 1.61413 1.43962 1.46908 1.19444 0.94744 0.87758 0.98167 1.21483 0.97715 1.00954 0.93710 1.22072 0.93052 1.03399 1.02537 1.23095 1.01020 1.00290 0.91490 1.21892 0.94227 0.98347 0.98797 1.21704 0.98069 1.01321 0.97463 1.23636 0.98390 0.96258 0.97188 1.18087 0.90638 0.95846 0.91858 0.96083 1.21039 0.91842 0.93130 1.46304 0.91377 1.25521 0.99572 0.97111 0.94668 1.69968 1.12957 1.23227 1.51415 0.86290 0.78931 0.81774 0.78726 1.19491 1.21638 1.18585 0.91091 0.88311 0.90953 0.92130 0.91919 0.93139 0.90400 0.90816 0.91521 0.91380 0.83535 0.83696 0.85834 0.89535 0.92520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 10.29 71.98 0.74 -1.42 16 2 C 0.04 1.05 6.19 71.98 0.45 1.49 16 3 O -0.34 -10.37 7.05 -51.48 -0.36 -10.73 16 4 C 0.48 18.43 6.24 71.24 0.44 18.88 16 5 O -0.54 -23.87 14.91 21.98 0.33 -23.54 16 6 C 0.00 0.00 0.28 -53.76 -0.01 -0.02 16 7 C -0.10 -3.70 4.53 30.59 0.14 -3.56 16 8 C -0.15 -4.19 9.14 71.98 0.66 -3.53 16 9 C -0.14 -5.03 7.79 24.50 0.19 -4.84 16 10 C -0.11 -4.10 10.10 23.42 0.24 -3.86 16 11 C -0.17 -6.78 10.10 23.42 0.24 -6.54 16 12 C -0.14 -6.37 6.35 24.50 0.16 -6.21 16 13 C 0.05 2.65 0.89 -12.37 -0.01 2.64 16 14 H 0.02 1.12 6.75 -2.39 -0.02 1.10 16 15 C -0.49 -26.64 8.00 25.60 0.20 -26.43 16 16 H 0.07 3.94 6.22 -2.91 -0.02 3.92 16 17 C 0.03 1.71 5.45 84.66 0.46 2.17 16 18 N -0.94 -57.08 13.96 21.45 0.30 -56.78 16 19 Si 0.92 46.04 24.49 68.60 1.68 47.72 16 20 H -0.27 -13.10 7.11 99.48 0.71 -12.39 16 21 H -0.29 -14.30 7.11 99.48 0.71 -13.59 16 22 H -0.26 -13.02 6.44 99.48 0.64 -12.37 16 23 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 24 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 25 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.06 1.52 8.13 -2.39 -0.02 1.50 16 27 H 0.06 1.54 8.13 -2.39 -0.02 1.52 16 28 H 0.05 1.90 8.14 -2.38 -0.02 1.88 16 29 H 0.08 3.16 6.02 -2.39 -0.01 3.14 16 30 H 0.07 1.95 5.32 -2.39 -0.01 1.94 16 31 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.07 1.68 6.26 -2.39 -0.01 1.67 16 33 H 0.15 4.27 6.28 -2.91 -0.02 4.26 16 34 H 0.15 4.09 8.06 -2.91 -0.02 4.07 16 35 H 0.12 4.30 8.06 -2.91 -0.02 4.28 16 36 H 0.09 4.08 5.86 -2.91 -0.02 4.06 16 37 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 Total: -1.00 -67.17 290.53 6.82 -60.34 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: 0.99 Total: 14.23 kcal Atomic # 6 Polarization: -35.13 SS G_CDS: 3.89 Total: -31.24 kcal Atomic # 7 Polarization: -57.08 SS G_CDS: 0.30 Total: -56.78 kcal Atomic # 8 Polarization: -34.24 SS G_CDS: -0.03 Total: -34.27 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 1.68 Total: 47.72 kcal Total: -67.17 6.82 -60.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095931696.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.969 kcal (2) G-P(sol) polarization free energy of solvation -67.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds