Wall clock time and date at job start Mon Mar 30 2020 06:48:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35995 * 116.99715 * 2 1 4 4 C 1.38565 * 120.07636 * 359.97438 * 3 2 1 5 5 C 1.38242 * 119.99815 * 180.02562 * 4 3 2 6 6 C 1.38247 * 120.14942 * 0.02562 * 5 4 3 7 7 C 1.50699 * 119.92810 * 179.97438 * 6 5 4 8 8 H 1.09006 * 109.47189 * 180.02562 * 7 6 5 9 9 C 1.53003 * 109.47020 * 60.00301 * 7 6 5 10 10 C 1.52998 * 109.47389 * 300.00404 * 7 6 5 11 11 C 1.50702 * 109.47345 * 185.00004 * 10 7 6 12 12 H 1.07997 * 119.99943 * 359.97438 * 11 10 7 13 13 C 1.37880 * 119.99878 * 180.02562 * 11 10 7 14 14 N 1.31517 * 120.00097 * 0.02562 * 13 11 10 15 15 Si 1.86793 * 119.99855 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.46887 * 90.00003 * 15 13 11 17 17 H 1.48504 * 109.47337 * 209.99946 * 15 13 11 18 18 H 1.48496 * 109.47238 * 330.00267 * 15 13 11 19 19 C 1.38250 * 120.14678 * 359.68589 * 6 5 4 20 20 C 1.38565 * 119.99582 * 0.59223 * 19 6 5 21 21 O 1.35995 * 120.07439 * 179.70339 * 20 19 6 22 22 C 1.42903 * 116.99587 * 359.72507 * 21 20 19 23 23 H 1.09004 * 109.47493 * 59.99556 * 1 2 3 24 24 H 1.08998 * 109.47227 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.47196 * 299.99473 * 1 2 3 26 26 H 1.07997 * 119.99773 * 0.04409 * 4 3 2 27 27 H 1.08004 * 119.92435 * 180.02562 * 5 4 3 28 28 H 1.09000 * 109.47145 * 179.97438 * 9 7 6 29 29 H 1.08994 * 109.47396 * 300.00079 * 9 7 6 30 30 H 1.09000 * 109.46938 * 60.00029 * 9 7 6 31 31 H 1.09001 * 109.46994 * 304.99895 * 10 7 6 32 32 H 1.09001 * 109.46922 * 64.99340 * 10 7 6 33 33 H 0.96993 * 119.99964 * 180.02562 * 14 13 11 34 34 H 1.07994 * 120.00399 * 180.29869 * 19 6 5 35 35 H 1.09002 * 109.47382 * 60.00075 * 22 21 20 36 36 H 1.09001 * 109.46938 * 300.00061 * 22 21 20 37 37 H 1.09004 * 109.46926 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2118 0.0000 4 6 1.2931 2.3748 -0.0005 5 6 1.9224 3.6057 -0.0011 6 6 3.3028 3.6799 -0.0016 7 6 3.9836 5.0244 -0.0028 8 1 5.0646 4.8843 -0.0035 9 6 3.5710 5.8060 1.2461 10 6 3.5700 5.8044 -1.2523 11 6 4.3433 7.0963 -1.3170 12 1 5.0579 7.3371 -0.5439 13 6 4.1377 7.9712 -2.3625 14 7 3.2663 7.6786 -3.3032 15 14 5.0956 9.5728 -2.4423 16 1 6.3568 9.3581 -3.1963 17 1 4.2780 10.6051 -3.1288 18 1 5.4137 10.0284 -1.0652 19 6 4.0603 2.5234 0.0049 20 6 3.4359 1.2863 -0.0003 21 8 4.1795 0.1477 0.0000 22 6 5.6003 0.3007 -0.0002 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8901 26 1 0.2146 2.3196 -0.0002 27 1 1.3341 4.5115 -0.0011 28 1 4.0637 6.7783 1.2456 29 1 2.4901 5.9460 1.2465 30 1 3.8656 5.2503 2.1364 31 1 3.7833 5.2085 -2.1397 32 1 2.5027 6.0215 -1.2084 33 1 3.1219 8.2940 -4.0389 34 1 5.1385 2.5840 0.0094 35 1 5.9066 0.8508 0.8896 36 1 5.9064 0.8502 -0.8904 37 1 6.0716 -0.6822 -0.0003 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107538818.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:40 Heat of formation + Delta-G solvation = -66.262213 kcal Electronic energy + Delta-G solvation = -18179.250215 eV Core-core repulsion = 15307.948198 eV Total energy + Delta-G solvation = -2871.302016 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.30727 -38.23354 -37.37934 -34.32818 -32.15822 -30.04921 -29.31859 -27.14293 -27.06871 -26.53269 -23.76704 -22.20659 -21.61982 -19.41024 -18.08561 -16.70232 -16.49515 -16.09538 -15.87724 -15.10191 -14.55863 -14.48221 -14.28414 -14.09643 -13.31941 -12.79242 -12.64670 -12.28059 -12.18504 -11.96134 -11.67034 -11.38845 -11.05561 -11.01973 -10.96788 -10.90891 -10.63099 -10.36537 -10.27613 -9.79898 -9.29575 -9.02300 -8.34658 -8.33162 -7.38227 -5.99289 -4.01469 1.63706 1.82707 3.31569 3.38198 3.40848 3.45744 3.47032 4.09109 4.46014 5.00966 5.09762 5.19242 5.21100 5.28572 5.35704 5.38113 5.42547 5.49424 5.57726 5.67134 5.82513 5.88821 6.08423 6.22987 6.29672 6.57832 6.65030 6.73286 6.95420 7.03278 7.12632 7.19337 7.26642 7.68396 7.81612 7.82877 8.00342 8.41785 9.04694 9.62066 11.11849 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.028676 B = 0.005042 C = 0.004689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.191156 B = 5552.307464 C = 5970.514576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.313 6.313 3 C 0.076 3.924 4 C -0.169 4.169 5 C -0.108 4.108 6 C -0.047 4.047 7 C -0.052 4.052 8 H 0.064 0.936 9 C -0.128 4.128 10 C 0.034 3.966 11 C -0.517 4.517 12 H 0.057 0.943 13 C 0.057 3.943 14 N -0.895 5.895 15 Si 0.890 3.110 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.274 1.274 19 C -0.174 4.174 20 C 0.095 3.905 21 O -0.312 6.312 22 C 0.027 3.973 23 H 0.053 0.947 24 H 0.094 0.906 25 H 0.051 0.949 26 H 0.129 0.871 27 H 0.129 0.871 28 H 0.065 0.935 29 H 0.048 0.952 30 H 0.032 0.968 31 H 0.016 0.984 32 H 0.019 0.981 33 H 0.260 0.740 34 H 0.132 0.868 35 H 0.053 0.947 36 H 0.055 0.945 37 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.041 -13.136 7.713 15.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.227 6.227 3 C 0.032 3.968 4 C -0.188 4.188 5 C -0.127 4.127 6 C -0.048 4.048 7 C -0.071 4.071 8 H 0.082 0.918 9 C -0.185 4.185 10 C -0.003 4.003 11 C -0.555 4.555 12 H 0.075 0.925 13 C -0.144 4.144 14 N -0.534 5.534 15 Si 0.718 3.282 16 H -0.207 1.207 17 H -0.213 1.213 18 H -0.199 1.199 19 C -0.193 4.193 20 C 0.050 3.950 21 O -0.226 6.226 22 C -0.068 4.068 23 H 0.071 0.929 24 H 0.113 0.887 25 H 0.070 0.930 26 H 0.147 0.853 27 H 0.146 0.854 28 H 0.084 0.916 29 H 0.067 0.933 30 H 0.051 0.949 31 H 0.034 0.966 32 H 0.038 0.962 33 H 0.070 0.930 34 H 0.149 0.851 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -2.098 -13.455 7.554 15.573 hybrid contribution 0.444 1.242 -0.274 1.347 sum -1.654 -12.213 7.281 14.315 Atomic orbital electron populations 1.22978 0.79262 1.03307 1.01128 1.86112 1.20454 1.26375 1.89752 1.18124 0.89013 0.84900 1.04784 1.21014 0.99491 0.91608 1.06705 1.20809 0.94399 0.96844 1.00618 1.20060 0.93430 0.95489 0.95782 1.20349 0.98357 0.89830 0.98519 0.91786 1.21719 1.01058 1.00274 0.95490 1.19149 0.96863 0.93851 0.90474 1.21239 1.22723 1.03497 1.08054 0.92507 1.25009 0.95367 0.98260 0.95758 1.69969 1.34554 1.36829 1.12068 0.86633 0.79922 0.83541 0.78137 1.20735 1.21286 1.19876 1.21025 1.00190 0.90566 1.07526 1.18186 0.88073 0.85853 1.02887 1.86108 1.18376 1.28669 1.89487 1.23013 0.79082 1.03271 1.01438 0.92878 0.88748 0.93020 0.85273 0.85350 0.91559 0.93330 0.94871 0.96584 0.96221 0.93040 0.85075 0.92862 0.92636 0.88680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.81 101.05 0.99 1.29 16 2 O -0.31 -4.84 10.28 -34.23 -0.35 -5.19 16 3 C 0.08 1.28 6.70 -39.12 -0.26 1.02 16 4 C -0.17 -2.68 9.04 -39.46 -0.36 -3.03 16 5 C -0.11 -1.91 8.75 -39.58 -0.35 -2.26 16 6 C -0.05 -0.88 4.78 -104.62 -0.50 -1.38 16 7 C -0.05 -1.06 2.51 -91.77 -0.23 -1.30 16 8 H 0.06 1.29 7.87 -51.93 -0.41 0.89 16 9 C -0.13 -2.39 8.81 37.16 0.33 -2.06 16 10 C 0.03 0.85 4.19 -27.88 -0.12 0.74 16 11 C -0.52 -14.22 8.41 -34.44 -0.29 -14.51 16 12 H 0.06 1.51 7.06 -52.49 -0.37 1.14 16 13 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 14 N -0.89 -26.72 13.29 55.43 0.74 -25.98 16 15 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 16 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 17 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 18 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 19 C -0.17 -3.00 8.66 -39.46 -0.34 -3.34 16 20 C 0.09 1.63 6.70 -39.12 -0.26 1.37 16 21 O -0.31 -4.98 10.28 -34.23 -0.35 -5.34 16 22 C 0.03 0.31 9.81 101.05 0.99 1.31 16 23 H 0.05 0.52 7.66 -51.93 -0.40 0.13 16 24 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.05 0.48 7.66 -51.93 -0.40 0.08 16 26 H 0.13 1.66 6.30 -52.49 -0.33 1.33 16 27 H 0.13 2.23 7.15 -52.48 -0.38 1.86 16 28 H 0.07 1.30 6.95 -51.93 -0.36 0.94 16 29 H 0.05 0.88 7.38 -51.93 -0.38 0.49 16 30 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.02 0.52 7.56 -51.93 -0.39 0.13 16 33 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 34 H 0.13 2.01 6.18 -52.49 -0.32 1.68 16 35 H 0.05 0.56 7.65 -51.93 -0.40 0.16 16 36 H 0.06 0.62 7.68 -51.93 -0.40 0.22 16 37 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 LS Contribution 306.31 15.07 4.62 4.62 Total: -1.00 -31.76 306.31 -6.23 -37.99 By element: Atomic # 1 Polarization: 3.51 SS G_CDS: -5.36 Total: -1.85 kcal Atomic # 6 Polarization: -20.15 SS G_CDS: -0.49 Total: -20.64 kcal Atomic # 7 Polarization: -26.72 SS G_CDS: 0.74 Total: -25.98 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: -0.70 Total: -10.53 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -31.76 -6.23 -37.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107538818.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.273 kcal (2) G-P(sol) polarization free energy of solvation -31.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds