Wall clock time and date at job start Mon Mar 30 2020 06:55:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42903 * 109.46726 * 2 1 4 4 C 1.35995 * 116.99587 * 180.02562 * 3 2 1 5 5 C 1.38562 * 120.07494 * 359.97438 * 4 3 2 6 6 C 1.38251 * 120.00023 * 180.02562 * 5 4 3 7 7 C 1.38247 * 120.14475 * 0.02562 * 6 5 4 8 8 C 1.38248 * 120.14965 * 359.97438 * 7 6 5 9 9 C 1.50699 * 120.00365 * 179.97438 * 8 7 6 10 10 H 1.09000 * 109.47076 * 180.02562 * 9 8 7 11 11 C 1.53006 * 109.47041 * 300.00181 * 9 8 7 12 12 C 1.52998 * 109.46682 * 59.99788 * 9 8 7 13 13 C 1.50704 * 109.46792 * 174.99949 * 12 9 8 14 14 H 1.08000 * 120.00012 * 0.02562 * 13 12 9 15 15 C 1.37882 * 120.00079 * 180.02562 * 13 12 9 16 16 N 1.31516 * 119.99924 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99834 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47389 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.46689 * 120.00061 * 17 15 13 20 20 H 1.48497 * 109.46810 * 239.99869 * 17 15 13 21 21 C 1.38562 * 119.99484 * 359.72331 * 8 7 6 22 22 O 1.35998 * 120.07373 * 180.27550 * 21 8 7 23 23 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47194 * 299.99575 * 1 2 3 25 25 H 1.08992 * 109.47399 * 59.99748 * 1 2 3 26 26 H 1.09002 * 109.47398 * 120.00244 * 2 1 3 27 27 H 1.09001 * 109.47194 * 240.00425 * 2 1 3 28 28 H 1.07999 * 120.00450 * 0.02761 * 5 4 3 29 29 H 1.07993 * 119.92771 * 180.02562 * 6 5 4 30 30 H 1.08001 * 119.92966 * 179.97438 * 7 6 5 31 31 H 1.09000 * 109.47261 * 60.00020 * 11 9 8 32 32 H 1.09005 * 109.46823 * 179.97438 * 11 9 8 33 33 H 1.08999 * 109.47066 * 299.99912 * 11 9 8 34 34 H 1.08999 * 109.47638 * 294.99977 * 12 9 8 35 35 H 1.08995 * 109.47278 * 55.00607 * 12 9 8 36 36 H 0.97000 * 119.99940 * 179.97438 * 16 15 13 37 37 H 0.96700 * 113.99786 * 270.27610 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3545 1.5255 -0.0005 5 6 4.2000 0.4278 -0.0005 6 6 5.5703 0.6107 -0.0005 7 6 6.1003 1.8875 0.0000 8 6 5.2624 2.9871 -0.0001 9 6 5.8436 4.3775 0.0011 10 1 5.0356 5.1091 0.0014 11 6 6.7049 4.5692 1.2511 12 6 6.7066 4.5704 -1.2474 13 6 7.1879 5.9972 -1.3099 14 1 6.9067 6.6963 -0.5362 15 6 7.9872 6.4100 -2.3547 16 7 8.3293 5.5589 -3.2972 17 14 8.5843 8.1784 -2.4317 18 1 8.0631 8.9283 -1.2606 19 1 10.0690 8.2007 -2.4136 20 1 8.0948 8.8120 -3.6823 21 6 3.8880 2.8107 -0.0064 22 8 3.0623 3.8913 -0.0120 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.8934 -0.5139 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 3.7886 -0.5708 -0.0005 29 1 6.2282 -0.2457 -0.0009 30 1 7.1713 2.0264 0.0004 31 1 7.5130 3.8376 1.2512 32 1 7.1257 5.5747 1.2516 33 1 6.0901 4.4317 2.1405 34 1 7.5644 3.8992 -1.2036 35 1 6.1157 4.3472 -2.1357 36 1 8.8913 5.8494 -4.0324 37 1 2.8226 4.2078 0.8697 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107556846.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:56 Heat of formation + Delta-G solvation = -78.105799 kcal Electronic energy + Delta-G solvation = -18185.989264 eV Core-core repulsion = 15314.173671 eV Total energy + Delta-G solvation = -2871.815593 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.23722 -38.08678 -36.22726 -34.72659 -32.26677 -31.74302 -29.00793 -28.69133 -26.83975 -24.41932 -23.33722 -22.20214 -21.53315 -19.37150 -18.02865 -17.08263 -16.44286 -16.12837 -15.84884 -15.19612 -14.45447 -14.31005 -13.86441 -13.44712 -13.05004 -12.98290 -12.73093 -12.47739 -12.10537 -11.86954 -11.67684 -11.54195 -11.16166 -11.02130 -10.87275 -10.68014 -10.65618 -10.34958 -10.03873 -9.75281 -9.36511 -8.96450 -8.30830 -8.14462 -7.83000 -5.95138 -3.96756 1.56831 1.71779 3.24095 3.34193 3.41716 3.45529 3.97310 4.49675 4.55721 4.78860 4.82681 5.07688 5.14766 5.24685 5.37729 5.40789 5.56863 5.63349 5.71459 5.77198 5.87682 6.07373 6.11234 6.29477 6.43826 6.45660 6.64371 6.76084 6.95359 7.04339 7.15287 7.16796 7.46369 7.73182 7.87030 8.04636 8.11466 8.46148 9.09154 9.66360 11.16225 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.035351 B = 0.004791 C = 0.004639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.861114 B = 5843.316827 C = 6033.829573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.053 3.947 3 O -0.310 6.310 4 C 0.100 3.900 5 C -0.214 4.214 6 C -0.090 4.090 7 C -0.134 4.134 8 C -0.039 4.039 9 C -0.054 4.054 10 H 0.075 0.925 11 C -0.128 4.128 12 C 0.036 3.964 13 C -0.514 4.514 14 H 0.058 0.942 15 C 0.056 3.944 16 N -0.895 5.895 17 Si 0.890 3.110 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.285 1.285 21 C 0.068 3.932 22 O -0.479 6.479 23 H 0.075 0.925 24 H 0.064 0.936 25 H 0.066 0.934 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.123 0.877 29 H 0.122 0.878 30 H 0.130 0.870 31 H 0.048 0.952 32 H 0.067 0.933 33 H 0.031 0.969 34 H 0.019 0.981 35 H 0.016 0.984 36 H 0.259 0.741 37 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.700 -11.672 9.306 18.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.224 6.224 4 C 0.054 3.946 5 C -0.233 4.233 6 C -0.108 4.108 7 C -0.152 4.152 8 C -0.039 4.039 9 C -0.073 4.073 10 H 0.093 0.907 11 C -0.185 4.185 12 C -0.001 4.001 13 C -0.552 4.552 14 H 0.076 0.924 15 C -0.145 4.145 16 N -0.535 5.535 17 Si 0.718 3.282 18 H -0.197 1.197 19 H -0.211 1.211 20 H -0.211 1.211 21 C 0.022 3.978 22 O -0.287 6.287 23 H 0.094 0.906 24 H 0.083 0.917 25 H 0.085 0.915 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.141 0.859 29 H 0.140 0.860 30 H 0.148 0.852 31 H 0.067 0.933 32 H 0.086 0.914 33 H 0.050 0.950 34 H 0.037 0.963 35 H 0.035 0.965 36 H 0.069 0.931 37 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -10.726 -11.596 8.528 17.951 hybrid contribution 0.418 0.636 0.228 0.795 sum -10.308 -10.959 8.756 17.408 Atomic orbital electron populations 1.21756 0.92993 1.02506 1.03528 1.22730 0.95669 0.82686 1.01114 1.86126 1.18908 1.28406 1.88961 1.19373 0.82348 0.93734 0.99116 1.20973 0.94298 0.97168 1.10875 1.20904 0.94050 0.97299 0.98576 1.20952 1.00437 0.91277 1.02530 1.20521 0.91044 0.97956 0.94401 1.20343 0.98649 0.89769 0.98530 0.90660 1.21733 0.98772 1.02706 0.95330 1.19123 0.93634 0.96887 0.90453 1.21264 1.30148 0.95737 1.08073 0.92424 1.25013 0.96431 0.97295 0.95723 1.69984 1.37046 1.34397 1.12038 0.86567 0.78399 0.85264 0.77965 1.19726 1.21111 1.21083 1.17623 0.88582 0.83687 1.07883 1.84935 1.66301 1.44965 1.32475 0.90641 0.91655 0.91477 0.92389 0.92250 0.85872 0.86003 0.85232 0.93323 0.91386 0.95004 0.96312 0.96518 0.93131 0.76863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 10.28 37.16 0.38 -0.88 16 2 C 0.05 0.57 5.46 37.16 0.20 0.77 16 3 O -0.31 -4.68 9.92 -34.23 -0.34 -5.02 16 4 C 0.10 1.64 6.70 -39.12 -0.26 1.38 16 5 C -0.21 -3.10 9.04 -39.46 -0.36 -3.46 16 6 C -0.09 -1.34 10.04 -39.57 -0.40 -1.74 16 7 C -0.13 -2.34 8.76 -39.57 -0.35 -2.69 16 8 C -0.04 -0.74 4.79 -104.50 -0.50 -1.24 16 9 C -0.05 -1.15 2.47 -91.77 -0.23 -1.38 16 10 H 0.08 1.64 6.99 -51.93 -0.36 1.27 16 11 C -0.13 -2.40 8.82 37.16 0.33 -2.07 16 12 C 0.04 0.94 4.19 -27.88 -0.12 0.83 16 13 C -0.51 -14.51 8.41 -34.44 -0.29 -14.80 16 14 H 0.06 1.57 7.06 -52.49 -0.37 1.20 16 15 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 16 N -0.90 -27.21 13.29 55.43 0.74 -26.48 16 17 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 18 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 19 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 20 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 21 C 0.07 1.24 6.69 -39.12 -0.26 0.98 16 22 O -0.48 -8.52 12.05 -34.24 -0.41 -8.93 16 23 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.06 0.53 7.66 -51.93 -0.40 0.14 16 27 H 0.06 0.60 7.66 -51.93 -0.40 0.20 16 28 H 0.12 1.42 6.30 -52.49 -0.33 1.09 16 29 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 30 H 0.13 2.24 7.16 -52.49 -0.38 1.87 16 31 H 0.05 0.88 7.39 -51.93 -0.38 0.49 16 32 H 0.07 1.34 6.95 -51.93 -0.36 0.98 16 33 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.02 0.51 7.57 -51.93 -0.39 0.12 16 35 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 37 H 0.38 4.85 9.06 45.56 0.41 5.27 16 LS Contribution 308.09 15.07 4.64 4.64 Total: -1.00 -32.75 308.09 -6.97 -39.72 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: -4.63 Total: 2.02 kcal Atomic # 6 Polarization: -20.82 SS G_CDS: -1.94 Total: -22.76 kcal Atomic # 7 Polarization: -27.21 SS G_CDS: 0.74 Total: -26.48 kcal Atomic # 8 Polarization: -13.20 SS G_CDS: -0.75 Total: -13.95 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -32.75 -6.97 -39.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107556846.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.386 kcal (2) G-P(sol) polarization free energy of solvation -32.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds