Wall clock time and date at job start Mon Mar 30 2020 06:55:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42903 * 109.46726 * 2 1 4 4 C 1.35995 * 116.99587 * 180.02562 * 3 2 1 5 5 C 1.38562 * 120.07494 * 359.97438 * 4 3 2 6 6 C 1.38251 * 120.00023 * 180.02562 * 5 4 3 7 7 C 1.38247 * 120.14475 * 0.02562 * 6 5 4 8 8 C 1.38248 * 120.14965 * 359.97438 * 7 6 5 9 9 C 1.50699 * 120.00365 * 179.97438 * 8 7 6 10 10 H 1.09000 * 109.47076 * 180.02562 * 9 8 7 11 11 C 1.53006 * 109.47041 * 300.00181 * 9 8 7 12 12 C 1.52998 * 109.46682 * 59.99788 * 9 8 7 13 13 C 1.50704 * 109.46792 * 174.99949 * 12 9 8 14 14 H 1.08000 * 120.00012 * 0.02562 * 13 12 9 15 15 C 1.37882 * 120.00079 * 180.02562 * 13 12 9 16 16 N 1.31516 * 119.99924 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99834 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47389 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.46689 * 120.00061 * 17 15 13 20 20 H 1.48497 * 109.46810 * 239.99869 * 17 15 13 21 21 C 1.38562 * 119.99484 * 359.72331 * 8 7 6 22 22 O 1.35998 * 120.07373 * 180.27550 * 21 8 7 23 23 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47194 * 299.99575 * 1 2 3 25 25 H 1.08992 * 109.47399 * 59.99748 * 1 2 3 26 26 H 1.09002 * 109.47398 * 120.00244 * 2 1 3 27 27 H 1.09001 * 109.47194 * 240.00425 * 2 1 3 28 28 H 1.07999 * 120.00450 * 0.02761 * 5 4 3 29 29 H 1.07993 * 119.92771 * 180.02562 * 6 5 4 30 30 H 1.08001 * 119.92966 * 179.97438 * 7 6 5 31 31 H 1.09000 * 109.47261 * 60.00020 * 11 9 8 32 32 H 1.09005 * 109.46823 * 179.97438 * 11 9 8 33 33 H 1.08999 * 109.47066 * 299.99912 * 11 9 8 34 34 H 1.08999 * 109.47638 * 294.99977 * 12 9 8 35 35 H 1.08995 * 109.47278 * 55.00607 * 12 9 8 36 36 H 0.97000 * 119.99940 * 179.97438 * 16 15 13 37 37 H 0.96700 * 113.99786 * 270.27610 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3545 1.5255 -0.0005 5 6 4.2000 0.4278 -0.0005 6 6 5.5703 0.6107 -0.0005 7 6 6.1003 1.8875 0.0000 8 6 5.2624 2.9871 -0.0001 9 6 5.8436 4.3775 0.0011 10 1 5.0356 5.1091 0.0014 11 6 6.7049 4.5692 1.2511 12 6 6.7066 4.5704 -1.2474 13 6 7.1879 5.9972 -1.3099 14 1 6.9067 6.6963 -0.5362 15 6 7.9872 6.4100 -2.3547 16 7 8.3293 5.5589 -3.2972 17 14 8.5843 8.1784 -2.4317 18 1 8.0631 8.9283 -1.2606 19 1 10.0690 8.2007 -2.4136 20 1 8.0948 8.8120 -3.6823 21 6 3.8880 2.8107 -0.0064 22 8 3.0623 3.8913 -0.0120 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.8934 -0.5139 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 3.7886 -0.5708 -0.0005 29 1 6.2282 -0.2457 -0.0009 30 1 7.1713 2.0264 0.0004 31 1 7.5130 3.8376 1.2512 32 1 7.1257 5.5747 1.2516 33 1 6.0901 4.4317 2.1405 34 1 7.5644 3.8992 -1.2036 35 1 6.1157 4.3472 -2.1357 36 1 8.8913 5.8494 -4.0324 37 1 2.8226 4.2078 0.8697 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107556846.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:56 Heat of formation + Delta-G solvation = -98.982094 kcal Electronic energy + Delta-G solvation = -18186.894528 eV Core-core repulsion = 15314.173671 eV Total energy + Delta-G solvation = -2872.720857 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.46857 -39.30494 -37.57983 -36.38997 -34.26577 -32.62096 -30.50364 -29.90312 -28.74100 -25.90573 -24.78060 -23.46174 -22.90666 -20.81704 -19.38520 -18.49079 -18.29585 -17.26634 -17.11323 -16.48645 -16.39529 -15.63720 -15.11594 -14.83945 -14.57526 -14.40524 -13.98658 -13.69979 -13.41244 -13.16926 -13.05332 -12.98579 -12.79752 -12.60791 -12.34285 -12.24403 -12.10219 -11.73415 -11.56210 -11.48384 -11.18929 -10.93328 -10.54040 -9.52262 -9.06448 -8.17085 -6.27182 0.29722 0.43802 1.40249 1.41163 1.54204 2.21921 2.42636 2.71441 3.16070 3.32318 3.83965 3.99659 4.07267 4.18730 4.27082 4.29543 4.42496 4.42963 4.58468 4.61089 4.73470 4.92129 4.94992 5.03188 5.12733 5.18480 5.26164 5.30632 5.38436 5.46207 5.51513 5.62578 5.77227 5.84991 5.90219 6.27165 6.37773 6.87835 6.92992 7.41046 8.95171 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.035351 B = 0.004791 C = 0.004639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.861114 B = 5843.316827 C = 6033.829573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.041 3.959 3 O -0.328 6.328 4 C 0.096 3.904 5 C -0.203 4.203 6 C -0.082 4.082 7 C -0.151 4.151 8 C -0.065 4.065 9 C -0.044 4.044 10 H 0.063 0.937 11 C -0.120 4.120 12 C 0.046 3.954 13 C -0.530 4.530 14 H 0.064 0.936 15 C -0.002 4.002 16 N -0.935 5.935 17 Si 0.963 3.037 18 H -0.260 1.260 19 H -0.277 1.277 20 H -0.282 1.282 21 C 0.048 3.952 22 O -0.497 6.497 23 H 0.104 0.896 24 H 0.063 0.937 25 H 0.056 0.944 26 H 0.078 0.922 27 H 0.067 0.933 28 H 0.161 0.839 29 H 0.157 0.843 30 H 0.122 0.878 31 H 0.050 0.950 32 H 0.053 0.947 33 H 0.061 0.939 34 H -0.001 1.001 35 H -0.027 1.027 36 H 0.262 0.738 37 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.367 -12.818 10.506 20.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.033 4.033 3 O -0.242 6.242 4 C 0.050 3.950 5 C -0.221 4.221 6 C -0.100 4.100 7 C -0.169 4.169 8 C -0.065 4.065 9 C -0.063 4.063 10 H 0.082 0.918 11 C -0.177 4.177 12 C 0.009 3.991 13 C -0.568 4.568 14 H 0.082 0.918 15 C -0.199 4.199 16 N -0.576 5.576 17 Si 0.788 3.212 18 H -0.184 1.184 19 H -0.202 1.202 20 H -0.208 1.208 21 C 0.002 3.998 22 O -0.308 6.308 23 H 0.123 0.877 24 H 0.082 0.918 25 H 0.075 0.925 26 H 0.096 0.904 27 H 0.086 0.914 28 H 0.178 0.822 29 H 0.175 0.825 30 H 0.140 0.860 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.017 0.983 35 H -0.009 1.009 36 H 0.071 0.929 37 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -11.411 -12.745 9.755 19.693 hybrid contribution 0.521 0.876 -0.151 1.031 sum -10.890 -11.868 9.604 18.753 Atomic orbital electron populations 1.21798 0.91468 1.04224 1.02983 1.23129 0.96963 0.80830 1.02408 1.86119 1.18037 1.31369 1.88691 1.19442 0.83464 0.93456 0.98655 1.21383 0.93856 0.98271 1.08617 1.21262 0.94899 0.97111 0.96696 1.21029 1.00009 0.92274 1.03591 1.20360 0.91933 0.97086 0.97135 1.20053 0.97701 0.91453 0.97092 0.91827 1.21635 0.98866 1.01843 0.95349 1.18929 0.93039 0.95761 0.91347 1.21670 1.30098 0.96759 1.08307 0.91803 1.25973 0.96578 1.02107 0.95256 1.70124 1.37875 1.36796 1.12802 0.85420 0.78040 0.79452 0.78282 1.18376 1.20232 1.20778 1.17788 0.88368 0.84751 1.08858 1.84865 1.66269 1.45353 1.34306 0.87748 0.91758 0.92497 0.90419 0.91427 0.82193 0.82494 0.85984 0.93085 0.92760 0.91968 0.98253 1.00885 0.92921 0.74878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 10.28 71.98 0.74 -1.36 16 2 C 0.04 0.75 5.46 71.98 0.39 1.15 16 3 O -0.33 -9.38 9.92 -79.63 -0.79 -10.17 16 4 C 0.10 3.02 6.70 22.57 0.15 3.18 16 5 C -0.20 -5.29 9.04 22.35 0.20 -5.09 16 6 C -0.08 -2.25 10.04 22.27 0.22 -2.02 16 7 C -0.15 -5.26 8.76 22.27 0.20 -5.07 16 8 C -0.06 -2.53 4.79 -19.79 -0.09 -2.62 16 9 C -0.04 -1.95 2.47 -11.54 -0.03 -1.98 16 10 H 0.06 2.88 6.99 -2.39 -0.02 2.86 16 11 C -0.12 -4.50 8.82 71.98 0.63 -3.87 16 12 C 0.05 2.55 4.19 29.85 0.12 2.68 16 13 C -0.53 -30.79 8.41 25.60 0.22 -30.58 16 14 H 0.06 3.54 7.06 -2.91 -0.02 3.52 16 15 C 0.00 -0.11 5.46 84.66 0.46 0.35 16 16 N -0.94 -58.49 13.29 21.45 0.28 -58.20 16 17 Si 0.96 45.25 29.54 68.60 2.03 47.28 16 18 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 19 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 20 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 21 C 0.05 1.76 6.69 22.57 0.15 1.91 16 22 O -0.50 -18.05 12.05 -79.66 -0.96 -19.01 16 23 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 24 H 0.06 0.92 8.14 -2.39 -0.02 0.91 16 25 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.08 1.13 7.66 -2.39 -0.02 1.11 16 27 H 0.07 1.13 7.66 -2.39 -0.02 1.12 16 28 H 0.16 2.94 6.30 -2.91 -0.02 2.92 16 29 H 0.16 3.15 8.06 -2.91 -0.02 3.13 16 30 H 0.12 4.33 7.16 -2.91 -0.02 4.31 16 31 H 0.05 1.86 7.39 -2.39 -0.02 1.84 16 32 H 0.05 2.15 6.95 -2.38 -0.02 2.13 16 33 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.00 -0.05 7.57 -2.39 -0.02 -0.07 16 35 H -0.03 -1.71 8.14 -2.39 -0.02 -1.73 16 36 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 37 H 0.39 10.32 9.06 -74.06 -0.67 9.65 16 Total: -1.00 -72.86 308.09 4.32 -68.54 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: 0.39 Total: 14.89 kcal Atomic # 6 Polarization: -46.69 SS G_CDS: 3.37 Total: -43.32 kcal Atomic # 7 Polarization: -58.49 SS G_CDS: 0.28 Total: -58.20 kcal Atomic # 8 Polarization: -27.43 SS G_CDS: -1.75 Total: -29.18 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Total: -72.86 4.32 -68.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107556846.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.444 kcal (2) G-P(sol) polarization free energy of solvation -72.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds