Wall clock time and date at job start Mon Mar 30 2020 06:48:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35983 * 117.00205 * 2 1 4 4 C 1.38719 * 119.99872 * 0.02562 * 3 2 1 5 5 C 1.38111 * 120.00006 * 180.02562 * 4 3 2 6 6 C 1.38716 * 119.99970 * 359.97438 * 5 4 3 7 7 O 1.35978 * 120.00282 * 180.02562 * 6 5 4 8 8 C 1.42902 * 116.99915 * 359.97438 * 7 6 5 9 9 C 1.38682 * 120.00210 * 0.02562 * 6 5 4 10 10 C 1.50696 * 120.00375 * 180.02562 * 9 6 5 11 11 H 1.09007 * 109.46722 * 359.97438 * 10 9 6 12 12 C 1.52992 * 109.47613 * 119.99756 * 10 9 6 13 13 C 1.53004 * 109.47084 * 240.00182 * 10 9 6 14 14 C 1.50701 * 109.47211 * 175.00039 * 13 10 9 15 15 H 1.08002 * 119.99761 * 359.97438 * 14 13 10 16 16 C 1.37871 * 119.99694 * 180.27574 * 14 13 10 17 17 N 1.31514 * 120.00482 * 359.71466 * 16 14 13 18 18 Si 1.86801 * 119.99746 * 179.72062 * 16 14 13 19 19 H 1.48504 * 109.47209 * 89.99886 * 18 16 14 20 20 H 1.48501 * 109.47358 * 209.99377 * 18 16 14 21 21 H 1.48496 * 109.47341 * 329.99989 * 18 16 14 22 22 C 1.38155 * 119.99592 * 0.27453 * 9 6 5 23 23 H 1.09004 * 109.47277 * 59.99722 * 1 2 3 24 24 H 1.08999 * 109.47241 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47152 * 299.99797 * 1 2 3 26 26 H 1.08002 * 120.00113 * 359.97438 * 4 3 2 27 27 H 1.07999 * 120.00248 * 179.97438 * 5 4 3 28 28 H 1.08995 * 109.47552 * 59.99700 * 8 7 6 29 29 H 1.09001 * 109.47170 * 180.02562 * 8 7 6 30 30 H 1.09005 * 109.46726 * 299.99620 * 8 7 6 31 31 H 1.09003 * 109.47367 * 180.02562 * 12 10 9 32 32 H 1.09004 * 109.47261 * 300.00073 * 12 10 9 33 33 H 1.09000 * 109.46966 * 60.00049 * 12 10 9 34 34 H 1.09000 * 109.47211 * 54.99065 * 13 10 9 35 35 H 1.09007 * 109.46376 * 294.99608 * 13 10 9 36 36 H 0.96995 * 120.00207 * 179.97438 * 17 16 14 37 37 H 1.08005 * 119.99637 * 179.70204 * 22 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2908 2.3750 0.0005 5 6 1.9179 3.6056 0.0000 6 6 3.3031 3.6782 -0.0005 7 8 3.9205 4.8897 -0.0005 8 6 3.0806 6.0458 -0.0005 9 6 4.0585 2.5151 -0.0011 10 6 5.5634 2.5939 -0.0011 11 1 5.8724 3.6392 -0.0011 12 6 6.1105 1.8998 1.2478 13 6 6.1104 1.9009 -1.2507 14 6 7.6046 2.0856 -1.3141 15 1 8.1133 2.6420 -0.5408 16 6 8.3215 1.5496 -2.3627 17 7 7.7022 0.8722 -3.3047 18 14 10.1728 1.7852 -2.4455 19 1 10.8463 0.6664 -1.7385 20 1 10.6063 1.8055 -3.8657 21 1 10.5376 3.0709 -1.7981 22 6 3.4312 1.2842 -0.0068 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 0.2123 2.3185 0.0005 27 1 1.3297 4.5114 0.0000 28 1 2.4513 6.0378 0.8894 29 1 3.6985 6.9438 -0.0010 30 1 2.4514 6.0378 -0.8906 31 1 7.1990 1.9573 1.2480 32 1 5.7208 2.3936 2.1380 33 1 5.8014 0.8546 1.2474 34 1 5.6522 2.3373 -2.1382 35 1 5.8773 0.8369 -1.2074 36 1 8.2065 0.4955 -4.0426 37 1 4.0195 0.3784 -0.0121 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107627187.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:42 Heat of formation + Delta-G solvation = -84.996493 kcal Electronic energy + Delta-G solvation = -18355.358799 eV Core-core repulsion = 15483.244403 eV Total energy + Delta-G solvation = -2872.114396 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.49186 -39.85332 -37.98222 -36.20378 -34.29766 -31.32896 -30.47205 -28.80951 -28.05802 -27.67864 -25.72233 -23.89801 -22.72542 -20.82448 -19.06745 -18.51458 -18.20688 -17.63747 -16.73262 -16.48631 -16.34158 -15.64543 -15.41064 -15.13793 -14.79193 -14.43317 -14.04529 -13.74389 -13.61314 -13.37964 -13.20253 -12.81913 -12.74895 -12.58525 -12.38078 -12.30547 -12.24638 -11.69953 -11.63943 -11.28328 -11.13576 -10.97419 -10.52145 -9.75311 -8.61422 -8.15266 -6.25753 0.31961 0.53367 1.40906 1.42859 1.53928 2.41304 2.43818 2.56772 2.77752 3.17321 3.79319 3.81916 4.16589 4.28667 4.34391 4.39132 4.45154 4.46397 4.50444 4.57371 4.65169 4.72984 4.76811 4.79545 4.97752 5.09357 5.22685 5.29859 5.31272 5.35957 5.45145 5.54816 5.70830 5.83932 5.91316 6.28542 6.44911 6.64487 6.89387 7.42305 8.96776 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.021298 B = 0.006123 C = 0.005188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.367197 B = 4571.686910 C = 5396.028295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.342 6.342 3 C 0.084 3.916 4 C -0.173 4.173 5 C -0.162 4.162 6 C 0.076 3.924 7 O -0.338 6.338 8 C 0.018 3.982 9 C -0.074 4.074 10 C -0.038 4.038 11 H 0.065 0.935 12 C -0.120 4.120 13 C 0.046 3.954 14 C -0.530 4.530 15 H 0.063 0.937 16 C -0.002 4.002 17 N -0.936 5.936 18 Si 0.964 3.036 19 H -0.271 1.271 20 H -0.283 1.283 21 H -0.262 1.262 22 C -0.129 4.129 23 H 0.063 0.937 24 H 0.116 0.884 25 H 0.069 0.931 26 H 0.164 0.836 27 H 0.163 0.837 28 H 0.071 0.929 29 H 0.112 0.888 30 H 0.062 0.938 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.045 0.955 34 H -0.023 1.023 35 H -0.007 1.007 36 H 0.262 0.738 37 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.195 5.872 8.713 19.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.256 6.256 3 C 0.040 3.960 4 C -0.191 4.191 5 C -0.181 4.181 6 C 0.032 3.968 7 O -0.252 6.252 8 C -0.076 4.076 9 C -0.075 4.075 10 C -0.057 4.057 11 H 0.083 0.917 12 C -0.177 4.177 13 C 0.009 3.991 14 C -0.568 4.568 15 H 0.081 0.919 16 C -0.199 4.199 17 N -0.577 5.577 18 Si 0.789 3.211 19 H -0.197 1.197 20 H -0.209 1.209 21 H -0.187 1.187 22 C -0.147 4.147 23 H 0.082 0.918 24 H 0.134 0.866 25 H 0.088 0.912 26 H 0.181 0.819 27 H 0.180 0.820 28 H 0.089 0.911 29 H 0.130 0.870 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.064 0.936 34 H -0.004 1.004 35 H 0.011 0.989 36 H 0.071 0.929 37 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -15.892 5.647 8.565 18.916 hybrid contribution 0.642 -0.033 -0.582 0.867 sum -15.250 5.614 7.983 18.106 Atomic orbital electron populations 1.23339 0.76465 1.05453 1.02322 1.86064 1.23542 1.26675 1.89346 1.18921 0.91585 0.85323 1.00204 1.21248 1.01124 0.90602 1.06166 1.21276 0.92043 0.99682 1.05070 1.18869 0.91602 0.85230 1.01131 1.86114 1.36989 1.12857 1.89261 1.23322 0.96308 0.85758 1.02211 1.19355 0.96182 0.90612 1.01341 1.19970 0.88889 1.00078 0.96761 0.91680 1.21625 1.00909 0.99441 0.95708 1.18943 0.94770 0.93858 0.91495 1.21635 0.93574 1.33491 1.08104 0.91857 1.25983 1.03782 0.94937 0.95229 1.70125 1.37722 1.37143 1.12710 0.85457 0.79315 0.79051 0.77293 1.19675 1.20902 1.18656 1.20106 0.92289 0.97288 1.05066 0.91833 0.86584 0.91206 0.81893 0.81953 0.91057 0.86964 0.91957 0.92638 0.92372 0.93594 1.00446 0.98857 0.92931 0.86609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.81 113.37 1.11 1.44 16 2 O -0.34 -10.29 10.50 -93.36 -0.98 -11.27 16 3 C 0.08 2.79 6.69 22.49 0.15 2.94 16 4 C -0.17 -4.56 9.03 22.35 0.20 -4.36 16 5 C -0.16 -4.41 9.03 22.35 0.20 -4.21 16 6 C 0.08 2.70 6.66 22.49 0.15 2.85 16 7 O -0.34 -11.41 9.26 -93.30 -0.86 -12.28 16 8 C 0.02 0.38 9.81 113.37 1.11 1.49 16 9 C -0.07 -3.06 4.79 -19.78 -0.09 -3.15 16 10 C -0.04 -1.78 2.47 -11.54 -0.03 -1.81 16 11 H 0.06 3.10 6.99 -2.38 -0.02 3.09 16 12 C -0.12 -4.92 8.82 71.98 0.63 -4.29 16 13 C 0.05 2.63 4.18 29.85 0.12 2.76 16 14 C -0.53 -31.37 8.41 25.60 0.22 -31.15 16 15 H 0.06 3.58 7.06 -2.91 -0.02 3.56 16 16 C 0.00 -0.13 5.46 84.65 0.46 0.33 16 17 N -0.94 -59.38 13.29 21.45 0.28 -59.09 16 18 Si 0.96 45.77 29.54 68.60 2.03 47.79 16 19 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 20 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 21 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 22 C -0.13 -5.13 8.70 22.35 0.19 -4.94 16 23 H 0.06 0.98 7.66 -2.38 -0.02 0.96 16 24 H 0.12 1.54 8.14 -2.39 -0.02 1.52 16 25 H 0.07 0.97 7.66 -2.39 -0.02 0.95 16 26 H 0.16 2.92 6.29 -2.91 -0.02 2.91 16 27 H 0.16 3.08 6.29 -2.91 -0.02 3.07 16 28 H 0.07 1.15 7.66 -2.39 -0.02 1.13 16 29 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.06 1.13 7.66 -2.38 -0.02 1.11 16 31 H 0.05 2.35 6.95 -2.39 -0.02 2.33 16 32 H 0.06 2.06 8.14 -2.38 -0.02 2.04 16 33 H 0.04 1.86 7.40 -2.39 -0.02 1.84 16 34 H -0.02 -1.44 8.14 -2.39 -0.02 -1.46 16 35 H -0.01 -0.42 7.55 -2.38 -0.02 -0.44 16 36 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 37 H 0.12 4.95 7.16 -2.91 -0.02 4.93 16 Total: -1.00 -73.97 304.98 5.96 -68.02 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: 1.05 Total: 8.93 kcal Atomic # 6 Polarization: -46.53 SS G_CDS: 4.44 Total: -42.10 kcal Atomic # 7 Polarization: -59.38 SS G_CDS: 0.28 Total: -59.09 kcal Atomic # 8 Polarization: -21.70 SS G_CDS: -1.84 Total: -23.55 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.79 kcal Total: -73.97 5.96 -68.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107627187.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.981 kcal (2) G-P(sol) polarization free energy of solvation -73.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds