Wall clock time and date at job start Mon Mar 30 2020 06:46:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.46901 * 2 1 4 4 O 1.42897 * 109.47005 * 120.00203 * 2 1 3 5 5 C 1.53002 * 109.47083 * 240.00307 * 2 1 3 6 6 C 1.50697 * 109.46967 * 175.00079 * 5 2 1 7 7 C 1.38270 * 119.94421 * 270.25509 * 6 5 2 8 8 C 1.38138 * 120.05794 * 180.26220 * 7 6 5 9 9 C 1.38736 * 119.94337 * 359.46080 * 8 7 6 10 10 O 1.35893 * 120.05957 * 180.30421 * 9 8 7 11 11 C 1.42899 * 117.00392 * 180.02562 * 10 9 8 12 12 C 1.53003 * 109.47433 * 179.97438 * 11 10 9 13 13 C 1.50695 * 109.47160 * 179.97438 * 12 11 10 14 14 H 1.08007 * 120.00132 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00138 * 180.02562 * 13 12 11 16 16 N 1.31521 * 119.99612 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00354 * 179.97438 * 15 13 12 18 18 H 1.48509 * 109.47178 * 59.99934 * 17 15 13 19 19 H 1.48500 * 109.47453 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.47305 * 300.00057 * 17 15 13 21 21 C 1.38740 * 119.88595 * 0.28279 * 9 8 7 22 22 C 1.38146 * 119.94197 * 359.97438 * 21 9 8 23 23 H 1.09000 * 109.47415 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47325 * 299.99465 * 1 2 3 25 25 H 1.08997 * 109.47439 * 59.99537 * 1 2 3 26 26 H 0.96704 * 114.00039 * 60.00243 * 4 2 1 27 27 H 1.08999 * 109.46732 * 54.99858 * 5 2 1 28 28 H 1.09002 * 109.47090 * 295.00175 * 5 2 1 29 29 H 1.08004 * 119.97397 * 0.02562 * 7 6 5 30 30 H 1.08002 * 120.03311 * 179.74549 * 8 7 6 31 31 H 1.09002 * 109.46729 * 299.99846 * 11 10 9 32 32 H 1.09001 * 109.47001 * 59.99870 * 11 10 9 33 33 H 1.08994 * 109.46893 * 300.00316 * 12 11 10 34 34 H 1.09001 * 109.46536 * 59.99754 * 12 11 10 35 35 H 0.97001 * 119.99220 * 180.02562 * 16 15 13 36 36 H 1.07993 * 120.02463 * 180.02562 * 21 9 8 37 37 H 1.08006 * 119.96944 * 179.97438 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.0400 -0.7212 -1.2493 6 6 3.5419 -0.6149 -1.3127 7 6 4.1313 0.4529 -1.9641 8 6 5.5077 0.5499 -2.0283 9 6 6.2990 -0.4194 -1.4289 10 8 7.6533 -0.3230 -1.4854 11 6 8.4045 -1.3573 -0.8467 12 6 9.8997 -1.0800 -1.0150 13 6 10.6919 -2.1704 -0.3409 14 1 10.1801 -2.9804 0.1575 15 6 12.0700 -2.1339 -0.3603 16 7 12.6932 -1.1477 -0.9675 17 14 13.0520 -3.4851 0.4760 18 1 12.7190 -4.7939 -0.1419 19 1 14.5032 -3.2160 0.3125 20 1 12.7144 -3.5201 1.9217 21 6 5.7051 -1.4870 -0.7714 22 6 4.3281 -1.5821 -0.7146 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5137 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 1.7210 -1.5953 1.2328 27 1 1.6053 -0.2616 -2.1369 28 1 1.7516 -1.7715 -1.2057 29 1 3.5149 1.2099 -2.4264 30 1 5.9677 1.3819 -2.5408 31 1 8.1568 -1.3838 0.2145 32 1 8.1600 -2.3174 -1.3010 33 1 10.1471 -1.0536 -2.0762 34 1 10.1445 -0.1197 -0.5610 35 1 13.6628 -1.1223 -0.9815 36 1 6.3188 -2.2425 -0.3037 37 1 3.8653 -2.4133 -0.2032 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122902460.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:54 Heat of formation + Delta-G solvation = -90.091023 kcal Electronic energy + Delta-G solvation = -17392.687589 eV Core-core repulsion = 14520.352278 eV Total energy + Delta-G solvation = -2872.335311 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.83869 -38.26314 -36.75976 -33.42455 -32.52717 -30.97523 -30.39963 -29.65417 -26.19372 -24.89344 -22.76575 -22.16103 -21.14803 -20.36542 -17.85145 -16.69659 -16.17303 -16.08702 -15.32544 -15.26273 -14.95658 -14.52928 -14.43306 -14.05441 -13.28386 -13.13483 -12.75034 -12.58984 -12.37828 -12.27445 -11.86048 -11.44977 -11.36378 -11.22904 -11.00879 -10.80948 -10.71523 -10.41264 -10.24099 -9.76712 -9.64461 -9.29987 -8.77025 -8.43551 -7.69272 -6.09246 -4.13963 1.57546 1.67976 3.29537 3.33761 3.35651 3.88812 3.94400 4.18976 4.42374 4.58360 4.74326 4.90502 5.03098 5.08786 5.18598 5.26404 5.27018 5.43838 5.54506 5.59296 5.67715 5.78704 5.89579 5.96408 6.05898 6.09775 6.23990 6.50421 6.60069 6.75370 6.77828 7.04595 7.47091 7.52173 7.65596 7.83031 8.09263 8.25266 8.91444 9.50232 11.02368 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.045401 B = 0.003476 C = 0.003303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.571955 B = 8053.973938 C = 8474.150803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.105 3.895 3 H 0.098 0.902 4 O -0.557 6.557 5 C -0.103 4.103 6 C -0.135 4.135 7 C -0.081 4.081 8 C -0.162 4.162 9 C 0.143 3.857 10 O -0.317 6.317 11 C 0.065 3.935 12 C 0.026 3.974 13 C -0.527 4.527 14 H 0.058 0.942 15 C 0.060 3.940 16 N -0.890 5.890 17 Si 0.899 3.101 18 H -0.275 1.275 19 H -0.286 1.286 20 H -0.275 1.275 21 C -0.211 4.211 22 C -0.064 4.064 23 H 0.057 0.943 24 H 0.062 0.938 25 H 0.065 0.935 26 H 0.370 0.630 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.121 0.879 30 H 0.127 0.873 31 H 0.050 0.950 32 H 0.050 0.950 33 H 0.027 0.973 34 H 0.028 0.972 35 H 0.264 0.736 36 H 0.129 0.871 37 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.110 0.815 -0.406 23.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.046 3.954 3 H 0.116 0.884 4 O -0.362 6.362 5 C -0.140 4.140 6 C -0.135 4.135 7 C -0.099 4.099 8 C -0.180 4.180 9 C 0.096 3.904 10 O -0.230 6.230 11 C -0.009 4.009 12 C -0.012 4.012 13 C -0.565 4.565 14 H 0.076 0.924 15 C -0.142 4.142 16 N -0.528 5.528 17 Si 0.727 3.273 18 H -0.201 1.201 19 H -0.211 1.211 20 H -0.201 1.201 21 C -0.230 4.230 22 C -0.082 4.082 23 H 0.076 0.924 24 H 0.082 0.918 25 H 0.084 0.916 26 H 0.217 0.783 27 H 0.095 0.905 28 H 0.089 0.911 29 H 0.139 0.861 30 H 0.145 0.855 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.046 0.954 34 H 0.046 0.954 35 H 0.074 0.926 36 H 0.147 0.853 37 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -22.508 1.615 -0.426 22.570 hybrid contribution 0.335 -1.439 0.387 1.528 sum -22.173 0.176 -0.040 22.174 Atomic orbital electron populations 1.22533 0.96659 1.02436 1.02710 1.21943 0.92077 0.96992 0.84417 0.88424 1.86658 1.77199 1.28651 1.43649 1.21210 0.92585 1.01370 0.98880 1.19436 0.94617 0.96872 1.02604 1.20705 0.93639 0.97175 0.98393 1.20414 0.92818 1.00131 1.04685 1.19230 0.84092 0.93559 0.93512 1.86165 1.13648 1.50167 1.73008 1.23321 0.94359 0.87982 0.95220 1.19116 0.85248 0.98206 0.98583 1.20943 0.91259 1.08634 1.35707 0.92413 1.24992 0.97783 0.96062 0.95347 1.69973 1.08915 1.31241 1.42681 0.86541 0.78846 0.81958 0.79986 1.20096 1.21109 1.20068 1.21354 0.95881 1.00298 1.05453 1.20677 0.92670 0.97874 0.96952 0.92383 0.91846 0.91600 0.78319 0.90451 0.91113 0.86121 0.85490 0.93136 0.93188 0.95421 0.95406 0.92649 0.85311 0.86556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.16 9.53 37.16 0.35 -0.81 16 2 C 0.10 0.89 3.57 -26.73 -0.10 0.80 16 3 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 4 O -0.56 -5.67 12.83 -35.23 -0.45 -6.12 16 5 C -0.10 -0.88 5.02 -27.88 -0.14 -1.02 16 6 C -0.14 -1.66 4.97 -104.60 -0.52 -2.18 16 7 C -0.08 -1.04 9.69 -39.61 -0.38 -1.43 16 8 C -0.16 -2.52 9.99 -39.43 -0.39 -2.91 16 9 C 0.14 2.59 6.69 -39.21 -0.26 2.33 16 10 O -0.32 -6.75 10.14 -19.40 -0.20 -6.95 16 11 C 0.07 1.44 4.68 37.16 0.17 1.61 16 12 C 0.03 0.68 5.34 -27.88 -0.15 0.54 16 13 C -0.53 -14.90 9.11 -34.44 -0.31 -15.21 16 14 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 15 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 16 N -0.89 -26.75 13.29 55.43 0.74 -26.01 16 17 Si 0.90 21.45 29.54 -169.99 -5.02 16.42 16 18 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 19 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 20 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 21 C -0.21 -3.45 9.04 -39.43 -0.36 -3.81 16 22 C -0.06 -0.86 9.39 -39.61 -0.37 -1.24 16 23 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 24 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.37 2.40 9.05 45.56 0.41 2.81 16 27 H 0.08 0.57 8.09 -51.93 -0.42 0.15 16 28 H 0.07 0.53 8.08 -51.93 -0.42 0.11 16 29 H 0.12 1.20 8.06 -52.48 -0.42 0.78 16 30 H 0.13 1.84 8.06 -52.49 -0.42 1.42 16 31 H 0.05 1.07 7.66 -51.93 -0.40 0.67 16 32 H 0.05 1.05 7.66 -51.93 -0.40 0.65 16 33 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.26 7.44 8.31 -40.82 -0.34 7.11 16 36 H 0.13 2.08 6.30 -52.49 -0.33 1.75 16 37 H 0.12 1.30 8.06 -52.48 -0.42 0.88 16 LS Contribution 315.52 15.07 4.75 4.75 Total: -1.00 -31.84 315.52 -7.63 -39.47 By element: Atomic # 1 Polarization: 5.02 SS G_CDS: -4.90 Total: 0.12 kcal Atomic # 6 Polarization: -19.14 SS G_CDS: -2.56 Total: -21.69 kcal Atomic # 7 Polarization: -26.75 SS G_CDS: 0.74 Total: -26.01 kcal Atomic # 8 Polarization: -12.42 SS G_CDS: -0.65 Total: -13.07 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -31.84 -7.63 -39.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122902460.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.617 kcal (2) G-P(sol) polarization free energy of solvation -31.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds