Wall clock time and date at job start Mon Mar 30 2020 06:46:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.46901 * 2 1 4 4 O 1.42897 * 109.47005 * 120.00203 * 2 1 3 5 5 C 1.53002 * 109.47083 * 240.00307 * 2 1 3 6 6 C 1.50697 * 109.46967 * 175.00079 * 5 2 1 7 7 C 1.38270 * 119.94421 * 270.25509 * 6 5 2 8 8 C 1.38138 * 120.05794 * 180.26220 * 7 6 5 9 9 C 1.38736 * 119.94337 * 359.46080 * 8 7 6 10 10 O 1.35893 * 120.05957 * 180.30421 * 9 8 7 11 11 C 1.42899 * 117.00392 * 180.02562 * 10 9 8 12 12 C 1.53003 * 109.47433 * 179.97438 * 11 10 9 13 13 C 1.50695 * 109.47160 * 179.97438 * 12 11 10 14 14 H 1.08007 * 120.00132 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00138 * 180.02562 * 13 12 11 16 16 N 1.31521 * 119.99612 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00354 * 179.97438 * 15 13 12 18 18 H 1.48509 * 109.47178 * 59.99934 * 17 15 13 19 19 H 1.48500 * 109.47453 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.47305 * 300.00057 * 17 15 13 21 21 C 1.38740 * 119.88595 * 0.28279 * 9 8 7 22 22 C 1.38146 * 119.94197 * 359.97438 * 21 9 8 23 23 H 1.09000 * 109.47415 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47325 * 299.99465 * 1 2 3 25 25 H 1.08997 * 109.47439 * 59.99537 * 1 2 3 26 26 H 0.96704 * 114.00039 * 60.00243 * 4 2 1 27 27 H 1.08999 * 109.46732 * 54.99858 * 5 2 1 28 28 H 1.09002 * 109.47090 * 295.00175 * 5 2 1 29 29 H 1.08004 * 119.97397 * 0.02562 * 7 6 5 30 30 H 1.08002 * 120.03311 * 179.74549 * 8 7 6 31 31 H 1.09002 * 109.46729 * 299.99846 * 11 10 9 32 32 H 1.09001 * 109.47001 * 59.99870 * 11 10 9 33 33 H 1.08994 * 109.46893 * 300.00316 * 12 11 10 34 34 H 1.09001 * 109.46536 * 59.99754 * 12 11 10 35 35 H 0.97001 * 119.99220 * 180.02562 * 16 15 13 36 36 H 1.07993 * 120.02463 * 180.02562 * 21 9 8 37 37 H 1.08006 * 119.96944 * 179.97438 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.0400 -0.7212 -1.2493 6 6 3.5419 -0.6149 -1.3127 7 6 4.1313 0.4529 -1.9641 8 6 5.5077 0.5499 -2.0283 9 6 6.2990 -0.4194 -1.4289 10 8 7.6533 -0.3230 -1.4854 11 6 8.4045 -1.3573 -0.8467 12 6 9.8997 -1.0800 -1.0150 13 6 10.6919 -2.1704 -0.3409 14 1 10.1801 -2.9804 0.1575 15 6 12.0700 -2.1339 -0.3603 16 7 12.6932 -1.1477 -0.9675 17 14 13.0520 -3.4851 0.4760 18 1 12.7190 -4.7939 -0.1419 19 1 14.5032 -3.2160 0.3125 20 1 12.7144 -3.5201 1.9217 21 6 5.7051 -1.4870 -0.7714 22 6 4.3281 -1.5821 -0.7146 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5137 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 1.7210 -1.5953 1.2328 27 1 1.6053 -0.2616 -2.1369 28 1 1.7516 -1.7715 -1.2057 29 1 3.5149 1.2099 -2.4264 30 1 5.9677 1.3819 -2.5408 31 1 8.1568 -1.3838 0.2145 32 1 8.1600 -2.3174 -1.3010 33 1 10.1471 -1.0536 -2.0762 34 1 10.1445 -0.1197 -0.5610 35 1 13.6628 -1.1223 -0.9815 36 1 6.3188 -2.2425 -0.3037 37 1 3.8653 -2.4133 -0.2032 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000122902460.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:54 Heat of formation + Delta-G solvation = -110.920162 kcal Electronic energy + Delta-G solvation = -17393.590808 eV Core-core repulsion = 14520.352278 eV Total energy + Delta-G solvation = -2873.238530 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.09018 -39.29246 -37.82797 -35.49930 -33.48558 -32.41127 -31.77118 -30.78498 -27.43516 -26.50505 -24.22672 -23.01322 -22.51861 -21.68405 -19.38361 -18.21303 -17.41949 -17.09544 -16.94903 -16.58110 -16.28112 -15.92378 -15.17528 -15.11362 -14.45756 -14.36608 -14.29862 -14.25544 -13.49526 -13.18176 -13.04375 -12.86501 -12.59876 -12.53999 -12.47498 -12.22378 -11.82724 -11.76163 -11.59203 -11.49423 -11.39362 -10.89936 -10.62736 -9.90454 -8.93509 -8.28035 -6.42283 0.43770 0.51391 1.39891 1.44248 1.52293 2.27690 2.52585 2.82512 3.06139 3.58852 3.85825 3.93380 4.00472 4.13710 4.20868 4.24096 4.34591 4.42939 4.50107 4.54541 4.67804 4.72540 4.81857 4.96486 5.00158 5.14715 5.23872 5.30245 5.34722 5.41965 5.44282 5.50625 5.67049 5.71781 5.95258 6.06713 6.57254 6.72187 6.96748 7.27946 8.85086 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.045401 B = 0.003476 C = 0.003303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.571955 B = 8053.973938 C = 8474.150803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.105 3.895 3 H 0.084 0.916 4 O -0.582 6.582 5 C -0.098 4.098 6 C -0.123 4.123 7 C -0.079 4.079 8 C -0.173 4.173 9 C 0.098 3.902 10 O -0.344 6.344 11 C 0.086 3.914 12 C 0.029 3.971 13 C -0.549 4.549 14 H 0.070 0.930 15 C 0.002 3.998 16 N -0.932 5.932 17 Si 0.978 3.022 18 H -0.263 1.263 19 H -0.281 1.281 20 H -0.264 1.264 21 C -0.224 4.224 22 C -0.068 4.068 23 H 0.070 0.930 24 H 0.057 0.943 25 H 0.078 0.922 26 H 0.385 0.615 27 H 0.098 0.902 28 H 0.089 0.911 29 H 0.156 0.844 30 H 0.129 0.871 31 H 0.057 0.943 32 H 0.059 0.941 33 H -0.001 1.001 34 H -0.003 1.003 35 H 0.268 0.732 36 H 0.123 0.877 37 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.710 -0.514 0.062 25.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.046 3.954 3 H 0.102 0.898 4 O -0.390 6.390 5 C -0.136 4.136 6 C -0.123 4.123 7 C -0.096 4.096 8 C -0.191 4.191 9 C 0.053 3.947 10 O -0.258 6.258 11 C 0.011 3.989 12 C -0.008 4.008 13 C -0.587 4.587 14 H 0.089 0.911 15 C -0.197 4.197 16 N -0.571 5.571 17 Si 0.801 3.199 18 H -0.187 1.187 19 H -0.206 1.206 20 H -0.188 1.188 21 C -0.242 4.242 22 C -0.086 4.086 23 H 0.089 0.911 24 H 0.076 0.924 25 H 0.097 0.903 26 H 0.234 0.766 27 H 0.117 0.883 28 H 0.108 0.892 29 H 0.173 0.827 30 H 0.146 0.854 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.017 0.983 34 H 0.016 0.984 35 H 0.076 0.924 36 H 0.141 0.859 37 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -25.148 0.280 0.039 25.150 hybrid contribution 0.972 -0.952 0.208 1.377 sum -24.176 -0.673 0.247 24.187 Atomic orbital electron populations 1.22449 0.94662 1.03419 1.03069 1.21943 0.93562 0.96135 0.83786 0.89824 1.86621 1.77814 1.30086 1.44479 1.21286 0.89493 1.02956 0.99824 1.19954 0.96887 0.95417 1.00047 1.21128 0.92601 0.98081 0.97829 1.20666 0.94077 0.99739 1.04645 1.19594 0.82653 0.95888 0.96569 1.86070 1.15863 1.50056 1.73839 1.22834 0.91682 0.88591 0.95774 1.18955 0.88847 0.96731 0.96272 1.21375 0.92083 1.09225 1.35987 0.91147 1.26066 0.99064 0.98737 0.95835 1.70122 1.09422 1.33468 1.44045 0.85317 0.76890 0.78612 0.79128 1.18750 1.20648 1.18817 1.21456 0.97343 0.99784 1.05652 1.21032 0.91555 0.99094 0.96878 0.91095 0.92425 0.90345 0.76575 0.88344 0.89234 0.82691 0.85351 0.92522 0.92308 0.98308 0.98427 0.92373 0.85877 0.83900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.62 9.53 71.98 0.69 -0.93 16 2 C 0.10 1.46 3.57 30.59 0.11 1.57 16 3 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 4 O -0.58 -10.38 12.83 -148.98 -1.91 -12.29 16 5 C -0.10 -1.28 5.02 29.85 0.15 -1.13 16 6 C -0.12 -2.66 4.97 -19.85 -0.10 -2.76 16 7 C -0.08 -1.85 9.69 22.25 0.22 -1.64 16 8 C -0.17 -5.38 9.99 22.37 0.22 -5.15 16 9 C 0.10 3.66 6.69 22.51 0.15 3.81 16 10 O -0.34 -15.46 10.14 -92.34 -0.94 -16.40 16 11 C 0.09 3.94 4.68 71.98 0.34 4.28 16 12 C 0.03 1.65 5.34 29.85 0.16 1.81 16 13 C -0.55 -31.74 9.11 25.60 0.23 -31.50 16 14 H 0.07 3.79 7.74 -2.91 -0.02 3.77 16 15 C 0.00 0.09 5.46 84.65 0.46 0.55 16 16 N -0.93 -57.59 13.29 21.45 0.28 -57.31 16 17 Si 0.98 44.05 29.54 68.60 2.03 46.07 16 18 H -0.26 -11.25 7.11 99.48 0.71 -10.55 16 19 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 20 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 21 C -0.22 -7.30 9.04 22.37 0.20 -7.10 16 22 C -0.07 -1.71 9.39 22.25 0.21 -1.50 16 23 H 0.07 0.47 8.14 -2.39 -0.02 0.46 16 24 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 25 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 26 H 0.39 3.85 9.05 -74.05 -0.67 3.18 16 27 H 0.10 0.95 8.09 -2.39 -0.02 0.93 16 28 H 0.09 0.90 8.08 -2.39 -0.02 0.88 16 29 H 0.16 2.53 8.06 -2.91 -0.02 2.51 16 30 H 0.13 3.81 8.06 -2.91 -0.02 3.78 16 31 H 0.06 2.49 7.66 -2.39 -0.02 2.47 16 32 H 0.06 2.55 7.66 -2.39 -0.02 2.53 16 33 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 34 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 35 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 36 H 0.12 4.03 6.30 -2.91 -0.02 4.01 16 37 H 0.14 2.77 8.06 -2.91 -0.02 2.74 16 Total: -1.00 -71.24 315.52 2.88 -68.36 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: 0.38 Total: 11.27 kcal Atomic # 6 Polarization: -42.74 SS G_CDS: 3.04 Total: -39.70 kcal Atomic # 7 Polarization: -57.59 SS G_CDS: 0.28 Total: -57.31 kcal Atomic # 8 Polarization: -25.84 SS G_CDS: -2.85 Total: -28.69 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.07 kcal Total: -71.24 2.88 -68.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122902460.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.557 kcal (2) G-P(sol) polarization free energy of solvation -71.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds