Wall clock time and date at job start Mon Mar 30 2020 06:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42897 * 114.00513 * 2 1 4 4 C 1.53001 * 109.47586 * 179.97438 * 3 2 1 5 5 C 1.52995 * 109.47123 * 179.97438 * 4 3 2 6 6 H 1.08993 * 109.47378 * 304.99898 * 5 4 3 7 7 C 1.53008 * 109.46985 * 184.99670 * 5 4 3 8 8 O 1.42898 * 109.47219 * 65.00344 * 5 4 3 9 9 C 1.35671 * 117.00228 * 201.51288 * 8 5 4 10 10 C 1.39317 * 119.82462 * 176.18581 * 9 8 5 11 11 C 1.36431 * 120.18636 * 179.76220 * 10 9 8 12 12 C 1.40829 * 119.81569 * 0.51359 * 11 10 9 13 13 C 1.41214 * 120.18262 * 179.71953 * 12 11 10 14 14 H 1.08001 * 120.00108 * 159.22558 * 13 12 11 15 15 C 1.39886 * 119.99884 * 339.23191 * 13 12 11 16 16 N 1.30878 * 120.00154 * 328.54613 * 15 13 12 17 17 Si 1.86804 * 120.00116 * 148.54903 * 15 13 12 18 18 H 1.48495 * 109.47349 * 94.97694 * 17 15 13 19 19 H 1.48506 * 109.46865 * 214.98125 * 17 15 13 20 20 H 1.48500 * 109.47027 * 334.97431 * 17 15 13 21 21 C 1.40841 * 119.63965 * 359.74060 * 12 11 10 22 22 C 1.36430 * 119.80982 * 0.02562 * 21 12 11 23 23 H 1.09000 * 109.47442 * 300.00447 * 1 2 3 24 24 H 1.09000 * 109.46625 * 59.99969 * 1 2 3 25 25 H 1.08997 * 109.47502 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47298 * 59.99660 * 3 2 1 27 27 H 1.08995 * 109.46896 * 299.99955 * 3 2 1 28 28 H 1.08998 * 109.47202 * 59.99729 * 4 3 2 29 29 H 1.09000 * 109.46761 * 300.00096 * 4 3 2 30 30 H 1.08994 * 109.47075 * 179.97438 * 7 5 4 31 31 H 1.08993 * 109.47249 * 300.00308 * 7 5 4 32 32 H 1.09000 * 109.46608 * 60.00505 * 7 5 4 33 33 H 1.08000 * 119.89834 * 0.02562 * 10 9 8 34 34 H 1.08005 * 120.09311 * 180.25571 * 11 10 9 35 35 H 0.97001 * 120.00725 * 180.02562 * 16 15 13 36 36 H 1.07994 * 120.09192 * 180.02562 * 21 12 11 37 37 H 1.08004 * 119.90816 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1578 2.5822 0.0000 6 1 3.7675 3.1534 -0.8423 7 6 5.6782 2.4635 -0.1250 8 8 3.8310 3.2497 1.2205 9 6 3.8993 4.6047 1.2190 10 6 3.5167 5.3191 2.3522 11 6 3.5870 6.6815 2.3604 12 6 4.0376 7.3664 1.2153 13 6 4.1078 8.7768 1.2133 14 1 4.7445 9.2847 0.5040 15 6 3.3528 9.5159 2.1300 16 7 2.1953 9.0633 2.5402 17 14 3.9966 11.1491 2.7687 18 1 3.4356 12.2556 1.9526 19 1 3.5876 11.3223 4.1857 20 1 5.4786 11.1674 2.6756 21 6 4.4175 6.6369 0.0719 22 6 4.3458 5.2746 0.0818 23 1 -0.3634 0.5139 0.8899 24 1 -0.3632 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.6887 1.8464 0.8900 27 1 1.6887 1.8463 -0.8900 28 1 3.8575 0.6434 -0.8891 29 1 3.8567 0.6438 0.8909 30 1 6.1215 3.4592 -0.1259 31 1 6.0685 1.8924 0.7173 32 1 5.9274 1.9544 -1.0560 33 1 3.1675 4.7925 3.2281 34 1 3.2939 7.2336 3.2412 35 1 1.6715 9.5760 3.1757 36 1 4.7645 7.1546 -0.8100 37 1 4.6363 4.7136 -0.7942 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129733000.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:58 Heat of formation + Delta-G solvation = -79.019075 kcal Electronic energy + Delta-G solvation = -17901.971949 eV Core-core repulsion = 15030.116753 eV Total energy + Delta-G solvation = -2871.855195 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.17863 -37.81371 -36.57576 -33.73039 -32.81774 -29.88913 -29.14111 -28.99224 -26.37609 -24.91565 -23.11639 -22.00369 -20.68767 -19.91055 -17.41642 -17.22145 -16.31441 -15.81561 -15.29085 -15.16250 -14.65866 -14.08229 -14.00509 -13.58932 -13.11324 -12.77824 -12.49519 -12.20235 -12.10511 -11.97150 -11.52027 -11.38727 -11.24254 -11.12769 -11.01514 -10.95762 -10.63632 -10.36580 -10.02093 -9.78472 -9.61552 -9.31413 -8.90572 -7.63719 -7.13191 -6.82519 -4.21264 2.77457 2.95403 3.06984 3.09938 3.24218 3.72655 3.92283 4.14676 4.52286 5.02744 5.17776 5.19837 5.29166 5.34878 5.48567 5.58196 5.59241 5.64611 5.69216 5.86194 6.00072 6.08644 6.11128 6.18531 6.30055 6.43838 6.75227 6.97909 7.10966 7.14967 7.16431 7.45727 7.55242 7.82189 7.99912 8.18003 8.45853 8.65895 8.86894 9.00226 10.09288 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.034014 B = 0.004462 C = 0.004125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.981531 B = 6273.280970 C = 6786.243497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.397 6.397 3 C 0.061 3.939 4 C -0.109 4.109 5 C 0.091 3.909 6 H 0.065 0.935 7 C -0.177 4.177 8 O -0.322 6.322 9 C -0.016 4.016 10 C -0.113 4.113 11 C -0.150 4.150 12 C 0.093 3.907 13 C -0.472 4.472 14 H 0.079 0.921 15 C 0.087 3.913 16 N -0.777 5.777 17 Si 0.895 3.105 18 H -0.271 1.271 19 H -0.274 1.274 20 H -0.259 1.259 21 C -0.205 4.205 22 C -0.161 4.161 23 H 0.042 0.958 24 H 0.039 0.961 25 H 0.082 0.918 26 H 0.061 0.939 27 H 0.047 0.953 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.095 0.905 34 H 0.113 0.887 35 H 0.282 0.718 36 H 0.093 0.907 37 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.346 -10.242 -3.338 10.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.316 6.316 3 C -0.016 4.016 4 C -0.146 4.146 5 C 0.033 3.967 6 H 0.083 0.917 7 C -0.234 4.234 8 O -0.239 6.239 9 C -0.059 4.059 10 C -0.132 4.132 11 C -0.169 4.169 12 C 0.091 3.909 13 C -0.500 4.500 14 H 0.097 0.903 15 C -0.133 4.133 16 N -0.401 5.401 17 Si 0.718 3.282 18 H -0.196 1.196 19 H -0.199 1.199 20 H -0.182 1.182 21 C -0.225 4.225 22 C -0.180 4.180 23 H 0.060 0.940 24 H 0.058 0.942 25 H 0.101 0.899 26 H 0.079 0.921 27 H 0.065 0.935 28 H 0.099 0.901 29 H 0.096 0.904 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.113 0.887 34 H 0.131 0.869 35 H 0.093 0.907 36 H 0.111 0.889 37 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.506 -10.470 -3.045 10.916 hybrid contribution -0.012 1.145 0.067 1.147 sum -0.518 -9.326 -2.978 9.803 Atomic orbital electron populations 1.22704 0.81248 1.02308 1.00162 1.87808 1.19598 1.28695 1.95533 1.22561 0.93908 0.84045 1.01063 1.21552 0.93400 0.96039 1.03617 1.21977 0.94549 0.91995 0.88150 0.91683 1.22340 0.96074 1.03200 1.01783 1.85880 1.86225 1.17993 1.33787 1.18491 1.10396 0.80396 0.96649 1.19765 1.03853 0.93917 0.95675 1.20717 1.05691 0.91667 0.98841 1.17527 0.89866 0.93315 0.90184 1.19407 1.23388 0.91306 1.15922 0.90308 1.25881 0.93016 0.99744 0.94679 1.69942 1.07673 1.38693 1.23823 0.86531 0.81120 0.81734 0.78777 1.19586 1.19942 1.18228 1.20499 1.11286 0.92677 0.98011 1.20461 1.05651 0.95449 0.96400 0.93971 0.94197 0.89924 0.92063 0.93478 0.90052 0.90357 0.91265 0.91945 0.92070 0.88671 0.86896 0.90735 0.88857 0.88558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 101.05 1.11 1.46 16 2 O -0.40 -5.51 10.70 -35.23 -0.38 -5.89 16 3 C 0.06 0.86 5.84 37.16 0.22 1.08 16 4 C -0.11 -1.48 5.29 -26.73 -0.14 -1.62 16 5 C 0.09 1.44 2.24 -26.73 -0.06 1.38 16 6 H 0.07 1.05 6.42 -51.93 -0.33 0.72 16 7 C -0.18 -2.50 9.10 37.16 0.34 -2.16 16 8 O -0.32 -6.49 9.34 -18.72 -0.17 -6.66 16 9 C -0.02 -0.37 6.59 -38.78 -0.26 -0.63 16 10 C -0.11 -2.74 9.92 -39.83 -0.40 -3.13 16 11 C -0.15 -3.90 8.74 -39.25 -0.34 -4.24 16 12 C 0.09 2.49 5.59 -106.80 -0.60 1.89 16 13 C -0.47 -12.50 8.95 -37.84 -0.34 -12.83 16 14 H 0.08 2.01 8.01 -52.49 -0.42 1.59 16 15 C 0.09 2.17 4.82 -17.34 -0.08 2.09 16 16 N -0.78 -19.94 11.62 55.54 0.65 -19.30 16 17 Si 0.89 18.36 29.66 -169.99 -5.04 13.32 16 18 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 19 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 20 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 21 C -0.21 -5.04 9.74 -39.25 -0.38 -5.42 16 22 C -0.16 -3.61 8.03 -39.83 -0.32 -3.93 16 23 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 24 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 25 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.06 0.96 7.82 -51.93 -0.41 0.55 16 27 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.07 1.09 6.64 -51.93 -0.34 0.74 16 31 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.10 2.13 8.06 -52.49 -0.42 1.70 16 34 H 0.11 2.99 6.40 -52.48 -0.34 2.65 16 35 H 0.28 6.52 8.30 -40.82 -0.34 6.18 16 36 H 0.09 2.15 8.06 -52.49 -0.42 1.73 16 37 H 0.10 1.88 5.33 -52.48 -0.28 1.60 16 LS Contribution 308.66 15.07 4.65 4.65 Total: -1.00 -28.13 308.66 -7.03 -35.16 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -5.48 Total: 4.79 kcal Atomic # 6 Polarization: -24.82 SS G_CDS: -1.25 Total: -26.07 kcal Atomic # 7 Polarization: -19.94 SS G_CDS: 0.65 Total: -19.30 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: -0.55 Total: -12.55 kcal Atomic # 14 Polarization: 18.36 SS G_CDS: -5.04 Total: 13.32 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -28.13 -7.03 -35.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129733000.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.860 kcal (2) G-P(sol) polarization free energy of solvation -28.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds