Wall clock time and date at job start Mon Mar 30 2020 06:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42897 * 114.00513 * 2 1 4 4 C 1.53001 * 109.47586 * 179.97438 * 3 2 1 5 5 C 1.52995 * 109.47123 * 179.97438 * 4 3 2 6 6 H 1.08993 * 109.47378 * 304.99898 * 5 4 3 7 7 C 1.53008 * 109.46985 * 184.99670 * 5 4 3 8 8 O 1.42898 * 109.47219 * 65.00344 * 5 4 3 9 9 C 1.35671 * 117.00228 * 201.51288 * 8 5 4 10 10 C 1.39317 * 119.82462 * 176.18581 * 9 8 5 11 11 C 1.36431 * 120.18636 * 179.76220 * 10 9 8 12 12 C 1.40829 * 119.81569 * 0.51359 * 11 10 9 13 13 C 1.41214 * 120.18262 * 179.71953 * 12 11 10 14 14 H 1.08001 * 120.00108 * 159.22558 * 13 12 11 15 15 C 1.39886 * 119.99884 * 339.23191 * 13 12 11 16 16 N 1.30878 * 120.00154 * 328.54613 * 15 13 12 17 17 Si 1.86804 * 120.00116 * 148.54903 * 15 13 12 18 18 H 1.48495 * 109.47349 * 94.97694 * 17 15 13 19 19 H 1.48506 * 109.46865 * 214.98125 * 17 15 13 20 20 H 1.48500 * 109.47027 * 334.97431 * 17 15 13 21 21 C 1.40841 * 119.63965 * 359.74060 * 12 11 10 22 22 C 1.36430 * 119.80982 * 0.02562 * 21 12 11 23 23 H 1.09000 * 109.47442 * 300.00447 * 1 2 3 24 24 H 1.09000 * 109.46625 * 59.99969 * 1 2 3 25 25 H 1.08997 * 109.47502 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47298 * 59.99660 * 3 2 1 27 27 H 1.08995 * 109.46896 * 299.99955 * 3 2 1 28 28 H 1.08998 * 109.47202 * 59.99729 * 4 3 2 29 29 H 1.09000 * 109.46761 * 300.00096 * 4 3 2 30 30 H 1.08994 * 109.47075 * 179.97438 * 7 5 4 31 31 H 1.08993 * 109.47249 * 300.00308 * 7 5 4 32 32 H 1.09000 * 109.46608 * 60.00505 * 7 5 4 33 33 H 1.08000 * 119.89834 * 0.02562 * 10 9 8 34 34 H 1.08005 * 120.09311 * 180.25571 * 11 10 9 35 35 H 0.97001 * 120.00725 * 180.02562 * 16 15 13 36 36 H 1.07994 * 120.09192 * 180.02562 * 21 12 11 37 37 H 1.08004 * 119.90816 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1578 2.5822 0.0000 6 1 3.7675 3.1534 -0.8423 7 6 5.6782 2.4635 -0.1250 8 8 3.8310 3.2497 1.2205 9 6 3.8993 4.6047 1.2190 10 6 3.5167 5.3191 2.3522 11 6 3.5870 6.6815 2.3604 12 6 4.0376 7.3664 1.2153 13 6 4.1078 8.7768 1.2133 14 1 4.7445 9.2847 0.5040 15 6 3.3528 9.5159 2.1300 16 7 2.1953 9.0633 2.5402 17 14 3.9966 11.1491 2.7687 18 1 3.4356 12.2556 1.9526 19 1 3.5876 11.3223 4.1857 20 1 5.4786 11.1674 2.6756 21 6 4.4175 6.6369 0.0719 22 6 4.3458 5.2746 0.0818 23 1 -0.3634 0.5139 0.8899 24 1 -0.3632 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.6887 1.8464 0.8900 27 1 1.6887 1.8463 -0.8900 28 1 3.8575 0.6434 -0.8891 29 1 3.8567 0.6438 0.8909 30 1 6.1215 3.4592 -0.1259 31 1 6.0685 1.8924 0.7173 32 1 5.9274 1.9544 -1.0560 33 1 3.1675 4.7925 3.2281 34 1 3.2939 7.2336 3.2412 35 1 1.6715 9.5760 3.1757 36 1 4.7645 7.1546 -0.8100 37 1 4.6363 4.7136 -0.7942 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129733000.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:58 Heat of formation + Delta-G solvation = -94.423427 kcal Electronic energy + Delta-G solvation = -17902.639931 eV Core-core repulsion = 15030.116753 eV Total energy + Delta-G solvation = -2872.523178 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.77702 -38.99151 -38.22490 -35.45115 -34.27932 -31.61294 -30.95282 -30.30857 -27.32619 -26.73899 -24.33766 -23.57653 -22.52955 -21.42071 -19.26629 -18.82901 -17.39672 -17.05456 -16.86749 -16.44492 -16.15063 -15.77542 -15.45003 -15.05589 -14.51642 -14.25036 -14.10168 -13.86027 -13.64195 -13.25182 -12.96220 -12.81240 -12.77288 -12.52384 -12.38282 -12.20097 -12.12542 -11.79619 -11.75019 -11.41669 -11.10424 -10.76828 -10.65177 -9.54651 -9.01197 -8.68181 -6.17085 0.97549 1.03024 1.38695 1.48159 1.57843 2.20952 2.60207 2.65835 2.79117 3.69526 3.90964 4.00988 4.10346 4.23557 4.35709 4.38091 4.38910 4.50415 4.53169 4.58803 4.73915 4.81180 4.86798 4.91240 5.01445 5.04501 5.15112 5.23898 5.26503 5.32099 5.60189 5.65548 5.92444 6.05824 6.16557 6.26284 6.55867 6.83629 6.92895 7.14195 8.26356 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.034014 B = 0.004462 C = 0.004125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.981531 B = 6273.280970 C = 6786.243497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.410 6.410 3 C 0.061 3.939 4 C -0.101 4.101 5 C 0.081 3.919 6 H 0.066 0.934 7 C -0.173 4.173 8 O -0.332 6.332 9 C -0.005 4.005 10 C -0.128 4.128 11 C -0.169 4.169 12 C 0.062 3.938 13 C -0.510 4.510 14 H 0.077 0.923 15 C 0.049 3.951 16 N -0.811 5.811 17 Si 0.971 3.029 18 H -0.260 1.260 19 H -0.265 1.265 20 H -0.259 1.259 21 C -0.218 4.218 22 C -0.157 4.157 23 H 0.040 0.960 24 H 0.049 0.951 25 H 0.105 0.895 26 H 0.038 0.962 27 H 0.053 0.947 28 H 0.109 0.891 29 H 0.076 0.924 30 H 0.051 0.949 31 H 0.064 0.936 32 H 0.094 0.906 33 H 0.106 0.894 34 H 0.098 0.902 35 H 0.291 0.709 36 H 0.103 0.897 37 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.086 -11.201 -4.166 11.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.330 6.330 3 C -0.015 4.015 4 C -0.138 4.138 5 C 0.025 3.975 6 H 0.084 0.916 7 C -0.230 4.230 8 O -0.248 6.248 9 C -0.048 4.048 10 C -0.146 4.146 11 C -0.188 4.188 12 C 0.060 3.940 13 C -0.538 4.538 14 H 0.095 0.905 15 C -0.169 4.169 16 N -0.436 5.436 17 Si 0.791 3.209 18 H -0.185 1.185 19 H -0.190 1.190 20 H -0.183 1.183 21 C -0.237 4.237 22 C -0.175 4.175 23 H 0.059 0.941 24 H 0.067 0.933 25 H 0.123 0.877 26 H 0.057 0.943 27 H 0.071 0.929 28 H 0.128 0.872 29 H 0.094 0.906 30 H 0.070 0.930 31 H 0.083 0.917 32 H 0.113 0.887 33 H 0.124 0.876 34 H 0.116 0.884 35 H 0.102 0.898 36 H 0.121 0.879 37 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -0.080 -11.453 -3.885 12.094 hybrid contribution -0.199 1.237 0.254 1.278 sum -0.279 -10.216 -3.630 10.845 Atomic orbital electron populations 1.22931 0.79702 1.03976 1.00552 1.87780 1.21346 1.28270 1.95577 1.22500 0.94476 0.84288 1.00260 1.21527 0.92821 0.94594 1.04863 1.22352 0.96146 0.92677 0.86327 0.91639 1.22315 0.94242 1.02668 1.03771 1.85882 1.86154 1.16351 1.36440 1.18542 1.08496 0.81787 0.96006 1.19948 1.04153 0.93605 0.96926 1.20648 1.07199 0.92458 0.98524 1.17868 0.90988 0.94051 0.91099 1.19649 1.24657 0.91802 1.17706 0.90521 1.26707 0.92633 1.03434 0.94142 1.69960 1.08655 1.40551 1.24386 0.85386 0.80093 0.77004 0.78427 1.18476 1.18967 1.18323 1.20739 1.11385 0.93754 0.97832 1.20728 1.04538 0.94842 0.97389 0.94135 0.93275 0.87697 0.94314 0.92912 0.87246 0.90561 0.93007 0.91663 0.88703 0.87568 0.88364 0.89835 0.87934 0.85376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.48 11.01 113.37 1.25 1.72 16 2 O -0.41 -10.62 10.70 -148.98 -1.59 -12.22 16 3 C 0.06 1.64 5.84 71.98 0.42 2.06 16 4 C -0.10 -2.48 5.29 30.59 0.16 -2.32 16 5 C 0.08 2.39 2.24 30.60 0.07 2.46 16 6 H 0.07 1.94 6.42 -2.39 -0.02 1.92 16 7 C -0.17 -4.38 9.10 71.98 0.66 -3.72 16 8 O -0.33 -12.95 9.34 -89.89 -0.84 -13.79 16 9 C 0.00 -0.21 6.59 22.79 0.15 -0.06 16 10 C -0.13 -6.26 9.92 22.11 0.22 -6.04 16 11 C -0.17 -9.08 8.74 22.48 0.20 -8.88 16 12 C 0.06 3.40 5.59 -21.28 -0.12 3.28 16 13 C -0.51 -27.75 8.95 23.40 0.21 -27.54 16 14 H 0.08 4.03 8.01 -2.91 -0.02 4.01 16 15 C 0.05 2.46 4.82 85.23 0.41 2.87 16 16 N -0.81 -42.52 11.62 21.82 0.25 -42.27 16 17 Si 0.97 37.94 29.66 68.60 2.03 39.98 16 18 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 19 H -0.27 -9.87 7.11 99.48 0.71 -9.17 16 20 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 21 C -0.22 -10.75 9.74 22.48 0.22 -10.53 16 22 C -0.16 -6.88 8.03 22.11 0.18 -6.70 16 23 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 24 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 26 H 0.04 1.19 7.82 -2.38 -0.02 1.18 16 27 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.05 1.50 6.64 -2.39 -0.02 1.49 16 31 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.11 4.83 8.06 -2.91 -0.02 4.80 16 34 H 0.10 5.44 6.40 -2.91 -0.02 5.42 16 35 H 0.29 13.66 8.30 -92.71 -0.77 12.89 16 36 H 0.10 4.74 8.06 -2.91 -0.02 4.72 16 37 H 0.13 4.72 5.33 -2.91 -0.02 4.71 16 Total: -1.00 -61.15 308.66 4.91 -56.24 By element: Atomic # 1 Polarization: 24.42 SS G_CDS: 1.04 Total: 25.46 kcal Atomic # 6 Polarization: -57.42 SS G_CDS: 4.02 Total: -53.40 kcal Atomic # 7 Polarization: -42.52 SS G_CDS: 0.25 Total: -42.27 kcal Atomic # 8 Polarization: -23.57 SS G_CDS: -2.43 Total: -26.01 kcal Atomic # 14 Polarization: 37.94 SS G_CDS: 2.03 Total: 39.98 kcal Total: -61.15 4.91 -56.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129733000.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.186 kcal (2) G-P(sol) polarization free energy of solvation -61.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds