Wall clock time and date at job start Mon Mar 30 2020 06:15:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47319 * 2 1 4 4 C 1.53002 * 109.46705 * 304.99959 * 3 2 1 5 5 O 1.42902 * 109.47155 * 65.00139 * 3 2 1 6 6 C 1.53002 * 109.47288 * 184.99936 * 3 2 1 7 7 O 1.42895 * 109.46981 * 179.97438 * 6 3 2 8 8 C 1.35678 * 116.99997 * 180.02562 * 7 6 3 9 9 C 1.39305 * 119.81904 * 180.02562 * 8 7 6 10 10 C 1.36438 * 120.18360 * 179.71525 * 9 8 7 11 11 C 1.40829 * 119.81200 * 0.27972 * 10 9 8 12 12 C 1.41223 * 120.18048 * 180.02562 * 11 10 9 13 13 H 1.08009 * 119.99992 * 335.14278 * 12 11 10 14 14 C 1.39886 * 120.00282 * 155.13982 * 12 11 10 15 15 N 1.30885 * 119.99755 * 342.15824 * 14 12 11 16 16 Si 1.86800 * 120.00131 * 162.15578 * 14 12 11 17 17 H 1.48502 * 109.47092 * 94.65822 * 16 14 12 18 18 H 1.48501 * 109.47092 * 214.65617 * 16 14 12 19 19 H 1.48497 * 109.47284 * 334.65885 * 16 14 12 20 20 C 1.40828 * 119.64615 * 359.97438 * 11 10 9 21 21 C 1.36442 * 119.80860 * 359.97438 * 20 11 10 22 22 H 1.08997 * 109.47339 * 179.97438 * 1 2 3 23 23 H 1.09005 * 109.47362 * 299.99995 * 1 2 3 24 24 H 1.09004 * 109.47318 * 60.00092 * 1 2 3 25 25 H 1.09004 * 109.46946 * 239.99665 * 2 1 3 26 26 H 1.09004 * 109.47318 * 119.99908 * 2 1 3 27 27 H 1.08999 * 109.47514 * 299.99413 * 4 3 2 28 28 H 1.08999 * 109.47083 * 60.00202 * 4 3 2 29 29 H 1.09010 * 109.46899 * 179.97438 * 4 3 2 30 30 H 0.96689 * 114.00123 * 59.99911 * 5 3 2 31 31 H 1.08999 * 109.46877 * 60.00033 * 6 3 2 32 32 H 1.08996 * 109.46840 * 300.00337 * 6 3 2 33 33 H 1.07998 * 119.90702 * 359.97438 * 9 8 7 34 34 H 1.08003 * 120.09720 * 180.29575 * 10 9 8 35 35 H 0.96996 * 120.00147 * 179.97438 * 15 14 12 36 36 H 1.07994 * 120.10143 * 180.02562 * 20 11 10 37 37 H 1.07998 * 119.91122 * 180.02562 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4299 2.1990 -1.1817 5 8 1.6620 2.0814 1.2211 6 6 3.5649 1.4443 -0.1257 7 8 4.0411 2.7916 -0.1263 8 6 5.3818 2.9709 -0.2323 9 6 5.9099 4.2599 -0.2383 10 6 7.2574 4.4487 -0.3387 11 6 8.1145 3.3361 -0.4423 12 6 9.5105 3.5225 -0.5460 13 1 9.9039 4.4474 -0.9415 14 6 10.3838 2.5093 -0.1365 15 7 9.9555 1.5541 0.6491 16 14 12.1613 2.5196 -0.7110 17 1 13.0081 3.1851 0.3114 18 1 12.6265 1.1229 -0.9062 19 1 12.2623 3.2590 -1.9948 20 6 7.5721 2.0364 -0.4408 21 6 6.2223 1.8649 -0.3386 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.7183 1.7118 -2.1131 28 1 0.3436 2.1978 -1.0921 29 1 1.7929 3.2269 -1.1814 30 1 2.0141 1.6543 2.0138 31 1 3.8532 0.9570 -1.0571 32 1 3.9994 0.9052 0.7161 33 1 5.2512 5.1121 -0.1591 34 1 7.6657 5.4486 -0.3384 35 1 10.5609 0.8514 0.9327 36 1 8.2225 1.1780 -0.5195 37 1 5.8046 0.8690 -0.3369 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000167823799.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:59 Heat of formation + Delta-G solvation = -85.263929 kcal Electronic energy + Delta-G solvation = -18064.143910 eV Core-core repulsion = 15192.017917 eV Total energy + Delta-G solvation = -2872.125993 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.29558 -37.90402 -36.05596 -33.36742 -33.21990 -30.03257 -29.62619 -28.88681 -26.90665 -24.83206 -23.44787 -21.18507 -20.46149 -19.96373 -17.34583 -16.95592 -16.41408 -15.66351 -15.33402 -15.06214 -14.53654 -13.95982 -13.88081 -13.26891 -12.87039 -12.57633 -12.31997 -12.27685 -12.08258 -11.89445 -11.65491 -11.61629 -11.40589 -11.10903 -11.03613 -10.97637 -10.58851 -10.45066 -9.88316 -9.83752 -9.72840 -9.34676 -8.99415 -7.64384 -6.99160 -6.72101 -4.24112 2.77761 2.97406 3.08221 3.12650 3.22345 3.88012 3.95769 4.42875 4.62517 4.79184 4.86605 5.02754 5.19050 5.39291 5.55556 5.65775 5.69789 5.75384 5.77132 5.86926 5.95295 6.07574 6.12321 6.15782 6.29710 6.42135 6.73557 6.90566 7.07769 7.29128 7.42320 7.57195 7.76246 7.92146 8.01229 8.16858 8.46725 8.66751 8.91164 9.00728 10.22793 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.046356 B = 0.004311 C = 0.004094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.882491 B = 6493.906933 C = 6838.281517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.148 4.148 3 C 0.135 3.865 4 C -0.137 4.137 5 O -0.549 6.549 6 C 0.044 3.956 7 O -0.315 6.315 8 C -0.009 4.009 9 C -0.113 4.113 10 C -0.195 4.195 11 C 0.087 3.913 12 C -0.464 4.464 13 H 0.077 0.923 14 C 0.075 3.925 15 N -0.801 5.801 16 Si 0.906 3.094 17 H -0.271 1.271 18 H -0.276 1.276 19 H -0.261 1.261 20 C -0.134 4.134 21 C -0.176 4.176 22 H 0.051 0.949 23 H 0.060 0.940 24 H 0.059 0.941 25 H 0.072 0.928 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.062 0.938 29 H 0.072 0.928 30 H 0.373 0.627 31 H 0.056 0.944 32 H 0.051 0.949 33 H 0.097 0.903 34 H 0.100 0.900 35 H 0.279 0.721 36 H 0.120 0.880 37 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.514 -4.585 -1.199 12.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.186 4.186 3 C 0.094 3.906 4 C -0.194 4.194 5 O -0.355 6.355 6 C -0.033 4.033 7 O -0.231 6.231 8 C -0.052 4.052 9 C -0.132 4.132 10 C -0.215 4.215 11 C 0.085 3.915 12 C -0.494 4.494 13 H 0.095 0.905 14 C -0.141 4.141 15 N -0.428 5.428 16 Si 0.730 3.270 17 H -0.197 1.197 18 H -0.201 1.201 19 H -0.185 1.185 20 C -0.153 4.153 21 C -0.194 4.194 22 H 0.070 0.930 23 H 0.080 0.920 24 H 0.078 0.922 25 H 0.091 0.909 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.081 0.919 29 H 0.091 0.909 30 H 0.220 0.780 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.115 0.885 34 H 0.118 0.882 35 H 0.089 0.911 36 H 0.138 0.862 37 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -11.877 -4.244 -1.475 12.699 hybrid contribution 1.406 -0.850 0.261 1.664 sum -10.471 -5.094 -1.214 11.707 Atomic orbital electron populations 1.21740 0.94821 1.01260 1.02687 1.22140 0.97359 0.96215 1.02887 1.21271 0.91129 0.91705 0.86480 1.21726 1.00688 1.01858 0.95178 1.86557 1.76416 1.57430 1.15062 1.23161 0.94051 0.85141 1.00975 1.85869 1.21185 1.25377 1.90668 1.18624 0.80736 0.94159 1.11679 1.19612 0.94919 0.93092 1.05567 1.20605 0.92118 0.97937 1.10851 1.17588 0.93276 0.90875 0.89805 1.19467 0.90790 1.01487 1.37667 0.90515 1.25867 1.01125 0.94465 0.92674 1.69844 1.37587 1.11072 1.24269 0.86341 0.81943 0.78393 0.80274 1.19650 1.20147 1.18484 1.20928 0.92516 0.98236 1.03657 1.20605 0.95177 0.95499 1.08162 0.92957 0.92047 0.92215 0.90908 0.91527 0.91519 0.91913 0.90885 0.78031 0.92571 0.93126 0.88520 0.88230 0.91058 0.86207 0.88962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.32 37.16 0.35 -1.02 16 2 C -0.15 -1.53 5.20 -26.73 -0.14 -1.67 16 3 C 0.13 1.80 0.87 -90.62 -0.08 1.72 16 4 C -0.14 -1.79 8.21 37.16 0.30 -1.49 16 5 O -0.55 -7.76 12.41 -44.83 -0.56 -8.32 16 6 C 0.04 0.71 3.82 37.16 0.14 0.85 16 7 O -0.32 -6.56 9.34 -28.34 -0.26 -6.82 16 8 C -0.01 -0.21 6.71 -38.78 -0.26 -0.47 16 9 C -0.11 -2.69 9.92 -39.83 -0.40 -3.09 16 10 C -0.20 -4.90 9.74 -39.25 -0.38 -5.28 16 11 C 0.09 2.34 5.57 -106.80 -0.60 1.75 16 12 C -0.46 -12.43 9.04 -37.83 -0.34 -12.77 16 13 H 0.08 1.97 7.91 -52.48 -0.41 1.56 16 14 C 0.08 1.90 5.13 -17.34 -0.09 1.81 16 15 N -0.80 -20.88 10.97 55.54 0.61 -20.27 16 16 Si 0.91 18.76 29.60 -169.99 -5.03 13.73 16 17 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 18 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 19 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 20 C -0.13 -3.51 8.64 -39.25 -0.34 -3.85 16 21 C -0.18 -4.17 8.97 -39.83 -0.36 -4.53 16 22 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 23 H 0.06 0.60 7.82 -51.93 -0.41 0.19 16 24 H 0.06 0.54 6.35 -51.93 -0.33 0.21 16 25 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.06 0.72 6.34 -51.93 -0.33 0.39 16 29 H 0.07 1.11 7.68 -51.92 -0.40 0.71 16 30 H 0.37 4.10 9.04 45.56 0.41 4.51 16 31 H 0.06 0.89 7.63 -51.93 -0.40 0.49 16 32 H 0.05 0.81 7.66 -51.93 -0.40 0.41 16 33 H 0.10 2.10 8.06 -52.49 -0.42 1.67 16 34 H 0.10 2.32 8.06 -52.48 -0.42 1.89 16 35 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16 36 H 0.12 3.22 6.18 -52.49 -0.32 2.90 16 37 H 0.09 1.95 6.27 -52.49 -0.33 1.62 16 LS Contribution 304.65 15.07 4.59 4.59 Total: -1.00 -29.32 304.65 -7.42 -36.74 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -4.59 Total: 8.37 kcal Atomic # 6 Polarization: -25.85 SS G_CDS: -2.18 Total: -28.03 kcal Atomic # 7 Polarization: -20.88 SS G_CDS: 0.61 Total: -20.27 kcal Atomic # 8 Polarization: -14.32 SS G_CDS: -0.82 Total: -15.14 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -5.03 Total: 13.73 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -29.32 -7.42 -36.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167823799.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.521 kcal (2) G-P(sol) polarization free energy of solvation -29.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds