Wall clock time and date at job start Mon Mar 30 2020 06:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47319 * 2 1 4 4 C 1.53002 * 109.46705 * 304.99959 * 3 2 1 5 5 O 1.42902 * 109.47155 * 65.00139 * 3 2 1 6 6 C 1.53002 * 109.47288 * 184.99936 * 3 2 1 7 7 O 1.42895 * 109.46981 * 179.97438 * 6 3 2 8 8 C 1.35678 * 116.99997 * 180.02562 * 7 6 3 9 9 C 1.39305 * 119.81904 * 180.02562 * 8 7 6 10 10 C 1.36438 * 120.18360 * 179.71525 * 9 8 7 11 11 C 1.40829 * 119.81200 * 0.27972 * 10 9 8 12 12 C 1.41223 * 120.18048 * 180.02562 * 11 10 9 13 13 H 1.08009 * 119.99992 * 335.14278 * 12 11 10 14 14 C 1.39886 * 120.00282 * 155.13982 * 12 11 10 15 15 N 1.30885 * 119.99755 * 342.15824 * 14 12 11 16 16 Si 1.86800 * 120.00131 * 162.15578 * 14 12 11 17 17 H 1.48502 * 109.47092 * 94.65822 * 16 14 12 18 18 H 1.48501 * 109.47092 * 214.65617 * 16 14 12 19 19 H 1.48497 * 109.47284 * 334.65885 * 16 14 12 20 20 C 1.40828 * 119.64615 * 359.97438 * 11 10 9 21 21 C 1.36442 * 119.80860 * 359.97438 * 20 11 10 22 22 H 1.08997 * 109.47339 * 179.97438 * 1 2 3 23 23 H 1.09005 * 109.47362 * 299.99995 * 1 2 3 24 24 H 1.09004 * 109.47318 * 60.00092 * 1 2 3 25 25 H 1.09004 * 109.46946 * 239.99665 * 2 1 3 26 26 H 1.09004 * 109.47318 * 119.99908 * 2 1 3 27 27 H 1.08999 * 109.47514 * 299.99413 * 4 3 2 28 28 H 1.08999 * 109.47083 * 60.00202 * 4 3 2 29 29 H 1.09010 * 109.46899 * 179.97438 * 4 3 2 30 30 H 0.96689 * 114.00123 * 59.99911 * 5 3 2 31 31 H 1.08999 * 109.46877 * 60.00033 * 6 3 2 32 32 H 1.08996 * 109.46840 * 300.00337 * 6 3 2 33 33 H 1.07998 * 119.90702 * 359.97438 * 9 8 7 34 34 H 1.08003 * 120.09720 * 180.29575 * 10 9 8 35 35 H 0.96996 * 120.00147 * 179.97438 * 15 14 12 36 36 H 1.07994 * 120.10143 * 180.02562 * 20 11 10 37 37 H 1.07998 * 119.91122 * 180.02562 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4299 2.1990 -1.1817 5 8 1.6620 2.0814 1.2211 6 6 3.5649 1.4443 -0.1257 7 8 4.0411 2.7916 -0.1263 8 6 5.3818 2.9709 -0.2323 9 6 5.9099 4.2599 -0.2383 10 6 7.2574 4.4487 -0.3387 11 6 8.1145 3.3361 -0.4423 12 6 9.5105 3.5225 -0.5460 13 1 9.9039 4.4474 -0.9415 14 6 10.3838 2.5093 -0.1365 15 7 9.9555 1.5541 0.6491 16 14 12.1613 2.5196 -0.7110 17 1 13.0081 3.1851 0.3114 18 1 12.6265 1.1229 -0.9062 19 1 12.2623 3.2590 -1.9948 20 6 7.5721 2.0364 -0.4408 21 6 6.2223 1.8649 -0.3386 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.7183 1.7118 -2.1131 28 1 0.3436 2.1978 -1.0921 29 1 1.7929 3.2269 -1.1814 30 1 2.0141 1.6543 2.0138 31 1 3.8532 0.9570 -1.0571 32 1 3.9994 0.9052 0.7161 33 1 5.2512 5.1121 -0.1591 34 1 7.6657 5.4486 -0.3384 35 1 10.5609 0.8514 0.9327 36 1 8.2225 1.1780 -0.5195 37 1 5.8046 0.8690 -0.3369 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000167823799.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:58 Heat of formation + Delta-G solvation = -102.838616 kcal Electronic energy + Delta-G solvation = -18064.906005 eV Core-core repulsion = 15192.017917 eV Total energy + Delta-G solvation = -2872.888088 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.78445 -39.34198 -37.73639 -35.20807 -34.23554 -31.58283 -31.37896 -30.39270 -28.14598 -26.64827 -24.56470 -23.02665 -22.17808 -21.09631 -19.27665 -18.61147 -17.71367 -16.94153 -16.88381 -16.37733 -15.78023 -15.64518 -15.46775 -14.70273 -14.34439 -14.21293 -13.85605 -13.56520 -13.33997 -13.20707 -12.98809 -12.90408 -12.74672 -12.74000 -12.58438 -12.27967 -11.83678 -11.71042 -11.62711 -11.46192 -11.16897 -10.90132 -10.80326 -9.58165 -8.91013 -8.60668 -6.23125 0.93077 1.03276 1.39598 1.49353 1.55651 2.22819 2.50728 2.71926 3.39164 3.69087 3.76089 3.84668 3.94396 4.27358 4.27776 4.35254 4.45945 4.51319 4.68272 4.76834 4.86866 4.93595 4.99146 5.03288 5.07919 5.12878 5.15348 5.35604 5.36970 5.47209 5.51506 5.65516 5.96528 6.05359 6.22901 6.55525 6.78071 6.84560 6.94626 7.10016 8.36463 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.046356 B = 0.004311 C = 0.004094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.882491 B = 6493.906933 C = 6838.281517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.142 4.142 3 C 0.138 3.862 4 C -0.139 4.139 5 O -0.566 6.566 6 C 0.033 3.967 7 O -0.323 6.323 8 C -0.001 4.001 9 C -0.123 4.123 10 C -0.205 4.205 11 C 0.055 3.945 12 C -0.501 4.501 13 H 0.076 0.924 14 C 0.035 3.965 15 N -0.832 5.832 16 Si 0.982 3.018 17 H -0.264 1.264 18 H -0.266 1.266 19 H -0.259 1.259 20 C -0.154 4.154 21 C -0.177 4.177 22 H 0.068 0.932 23 H 0.054 0.946 24 H 0.061 0.939 25 H 0.082 0.918 26 H 0.076 0.924 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.045 0.955 30 H 0.385 0.615 31 H 0.063 0.937 32 H 0.055 0.945 33 H 0.116 0.884 34 H 0.109 0.891 35 H 0.287 0.713 36 H 0.107 0.893 37 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.169 -5.535 -1.419 13.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.180 4.180 3 C 0.097 3.903 4 C -0.196 4.196 5 O -0.373 6.373 6 C -0.043 4.043 7 O -0.239 6.239 8 C -0.045 4.045 9 C -0.142 4.142 10 C -0.224 4.224 11 C 0.052 3.948 12 C -0.531 4.531 13 H 0.094 0.906 14 C -0.179 4.179 15 N -0.459 5.459 16 Si 0.802 3.198 17 H -0.188 1.188 18 H -0.191 1.191 19 H -0.183 1.183 20 C -0.174 4.174 21 C -0.195 4.195 22 H 0.087 0.913 23 H 0.073 0.927 24 H 0.080 0.920 25 H 0.101 0.899 26 H 0.094 0.906 27 H 0.098 0.902 28 H 0.097 0.903 29 H 0.064 0.936 30 H 0.234 0.766 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.134 0.866 34 H 0.127 0.873 35 H 0.098 0.902 36 H 0.125 0.875 37 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -12.559 -5.198 -1.684 13.696 hybrid contribution 1.441 -0.567 0.368 1.592 sum -11.118 -5.765 -1.315 12.593 Atomic orbital electron populations 1.21730 0.93791 1.02288 1.02472 1.22108 0.98126 0.93893 1.03878 1.21350 0.88868 0.93711 0.86322 1.21767 1.01692 1.00333 0.95835 1.86532 1.76542 1.58338 1.15890 1.23566 0.96223 0.83011 1.01458 1.85881 1.19365 1.28390 1.90239 1.18753 0.82039 0.93915 1.09813 1.19883 0.94828 0.94247 1.05201 1.20801 0.92720 0.98074 1.10833 1.17945 0.94091 0.91779 0.90939 1.19726 0.91433 1.02527 1.39403 0.90627 1.26718 1.05527 0.93597 0.92057 1.69890 1.39487 1.11721 1.24814 0.85205 0.76078 0.78804 0.79679 1.18835 1.19051 1.18314 1.20908 0.93457 0.97685 1.05344 1.20803 0.94382 0.96976 1.07375 0.91331 0.92682 0.92029 0.89949 0.90571 0.90221 0.90340 0.93566 0.76647 0.91898 0.92724 0.86551 0.87276 0.90246 0.87535 0.86553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 9.32 71.98 0.67 -1.60 16 2 C -0.14 -2.54 5.20 30.59 0.16 -2.38 16 3 C 0.14 3.40 0.87 -10.79 -0.01 3.40 16 4 C -0.14 -3.40 8.21 71.98 0.59 -2.81 16 5 O -0.57 -15.05 12.41 -139.80 -1.73 -16.78 16 6 C 0.03 1.03 3.82 71.98 0.28 1.31 16 7 O -0.32 -13.08 9.34 -80.77 -0.75 -13.83 16 8 C 0.00 -0.06 6.71 22.79 0.15 0.10 16 9 C -0.12 -5.83 9.92 22.11 0.22 -5.61 16 10 C -0.20 -10.40 9.74 22.48 0.22 -10.18 16 11 C 0.05 3.02 5.57 -21.28 -0.12 2.90 16 12 C -0.50 -27.46 9.04 23.40 0.21 -27.25 16 13 H 0.08 3.99 7.91 -2.91 -0.02 3.96 16 14 C 0.03 1.77 5.13 85.23 0.44 2.21 16 15 N -0.83 -43.91 10.97 21.82 0.24 -43.67 16 16 Si 0.98 38.47 29.60 68.60 2.03 40.50 16 17 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 18 H -0.27 -9.89 7.11 99.48 0.71 -9.18 16 19 H -0.26 -9.99 7.11 99.48 0.71 -9.29 16 20 C -0.15 -8.26 8.64 22.48 0.19 -8.06 16 21 C -0.18 -8.37 8.97 22.11 0.20 -8.17 16 22 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 23 H 0.05 0.93 7.82 -2.38 -0.02 0.92 16 24 H 0.06 0.93 6.35 -2.38 -0.02 0.92 16 25 H 0.08 1.33 8.14 -2.38 -0.02 1.32 16 26 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 27 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 28 H 0.08 1.64 6.34 -2.39 -0.02 1.63 16 29 H 0.05 1.36 7.68 -2.38 -0.02 1.35 16 30 H 0.38 7.83 9.04 -74.06 -0.67 7.16 16 31 H 0.06 1.87 7.63 -2.39 -0.02 1.85 16 32 H 0.05 1.65 7.66 -2.39 -0.02 1.63 16 33 H 0.12 4.95 8.06 -2.91 -0.02 4.93 16 34 H 0.11 5.16 8.06 -2.91 -0.02 5.13 16 35 H 0.29 13.64 8.30 -92.71 -0.77 12.87 16 36 H 0.11 5.89 6.18 -2.91 -0.02 5.87 16 37 H 0.12 4.80 6.27 -2.91 -0.02 4.79 16 Total: -1.00 -62.98 304.65 3.38 -59.60 By element: Atomic # 1 Polarization: 29.94 SS G_CDS: 0.39 Total: 30.34 kcal Atomic # 6 Polarization: -59.35 SS G_CDS: 3.20 Total: -56.15 kcal Atomic # 7 Polarization: -43.91 SS G_CDS: 0.24 Total: -43.67 kcal Atomic # 8 Polarization: -28.13 SS G_CDS: -2.49 Total: -30.62 kcal Atomic # 14 Polarization: 38.47 SS G_CDS: 2.03 Total: 40.50 kcal Total: -62.98 3.38 -59.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167823799.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.239 kcal (2) G-P(sol) polarization free energy of solvation -62.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds