Wall clock time and date at job start Mon Mar 30 2020 05:58:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35967 * 117.00001 * 2 1 4 4 C 1.37828 * 120.01968 * 0.02562 * 3 2 1 5 5 C 1.40790 * 119.64487 * 179.97438 * 4 3 2 6 6 C 1.41200 * 120.15654 * 180.02562 * 5 4 3 7 7 H 1.07998 * 119.99975 * 208.93198 * 6 5 4 8 8 C 1.39874 * 120.00136 * 28.93501 * 6 5 4 9 9 N 1.30890 * 119.99797 * 12.09348 * 8 6 5 10 10 Si 1.86800 * 120.00085 * 192.09558 * 8 6 5 11 11 H 1.48499 * 109.46952 * 59.99759 * 10 8 6 12 12 H 1.48499 * 109.47170 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.47078 * 299.99871 * 10 8 6 14 14 C 1.40850 * 119.68673 * 359.97438 * 5 4 3 15 15 C 1.50700 * 119.98767 * 180.02562 * 14 5 4 16 16 C 1.53004 * 109.47056 * 125.10949 * 15 14 5 17 17 C 1.52994 * 109.47334 * 245.11033 * 15 14 5 18 18 C 1.36463 * 120.02538 * 0.02562 * 14 5 4 19 19 C 1.39151 * 120.36222 * 359.70360 * 18 14 5 20 20 O 1.35741 * 119.84163 * 180.27713 * 19 18 14 21 21 C 1.42903 * 116.99679 * 0.27020 * 20 19 18 22 22 H 1.08991 * 109.47094 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47236 * 60.00098 * 1 2 3 24 24 H 1.09005 * 109.47036 * 300.00214 * 1 2 3 25 25 H 1.08001 * 120.17425 * 359.95040 * 4 3 2 26 26 H 0.96999 * 119.99629 * 180.02562 * 9 8 6 27 27 H 1.09001 * 109.46712 * 5.11338 * 15 14 5 28 28 H 1.08999 * 109.47188 * 180.02562 * 16 15 14 29 29 H 1.09002 * 109.47016 * 300.00114 * 16 15 14 30 30 H 1.08997 * 109.46991 * 59.99825 * 16 15 14 31 31 H 1.08998 * 109.47262 * 59.99608 * 17 15 14 32 32 H 1.09000 * 109.47218 * 180.02562 * 17 15 14 33 33 H 1.09006 * 109.47163 * 300.00197 * 17 15 14 34 34 H 1.08001 * 119.81344 * 179.97438 * 18 14 5 35 35 H 1.09000 * 109.47582 * 299.99984 * 21 20 19 36 36 H 1.09001 * 109.47082 * 60.00860 * 21 20 19 37 37 H 1.09002 * 109.46902 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2960 2.3677 0.0005 5 6 1.9434 3.6179 0.0011 6 6 1.1854 4.8092 0.0022 7 1 1.5859 5.7045 -0.4499 8 6 -0.0842 4.8298 0.5888 9 7 -0.4750 3.8305 1.3385 10 14 -1.2221 6.2832 0.3022 11 1 -1.4960 6.4184 -1.1510 12 1 -2.4989 6.0629 1.0278 13 1 -0.5760 7.5236 0.8016 14 6 3.3508 3.6747 0.0016 15 6 4.0507 5.0093 0.0028 16 6 5.0219 5.0748 1.1833 17 6 4.8257 5.1799 -1.3053 18 6 4.0807 2.5217 0.0011 19 6 3.4425 1.2852 0.0062 20 8 4.1790 0.1450 0.0113 21 6 5.6005 0.2909 0.0171 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 0.5139 0.8900 25 1 0.2173 2.3148 0.0001 26 1 -1.3556 3.8446 1.7450 27 1 3.3129 5.8064 0.0947 28 1 5.5279 6.0402 1.1844 29 1 4.4698 4.9532 2.1152 30 1 5.7596 4.2776 1.0914 31 1 4.1338 5.1332 -2.1462 32 1 5.3323 6.1450 -1.3042 33 1 5.5635 4.3827 -1.3971 34 1 5.1597 2.5693 0.0011 35 1 5.9133 0.8376 -0.8725 36 1 5.9057 0.8406 0.9075 37 1 6.0669 -0.6943 0.0213 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000199430727.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:58:40 Heat of formation + Delta-G solvation = -70.509265 kcal Electronic energy + Delta-G solvation = -18978.950586 eV Core-core repulsion = 16107.464404 eV Total energy + Delta-G solvation = -2871.486182 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.25091 -37.32604 -36.79629 -34.03723 -32.79564 -29.33494 -28.31104 -26.84183 -26.44935 -26.38207 -24.54369 -21.67825 -20.77271 -18.94079 -17.70806 -16.87225 -15.64817 -15.46631 -14.99942 -14.74677 -14.32712 -13.94981 -13.55772 -13.33709 -13.18844 -12.65616 -12.38317 -12.07067 -11.70250 -11.57745 -11.39755 -11.31090 -11.09344 -10.89995 -10.66320 -10.52569 -10.45937 -10.24461 -10.13492 -9.58115 -9.44216 -9.28656 -8.95617 -7.25377 -6.80214 -6.51577 -4.30875 2.78429 2.88753 3.06128 3.08941 3.20323 3.93598 4.38476 4.41504 4.61634 5.49533 5.67842 5.72749 5.76224 5.77185 5.89393 5.94878 6.00381 6.05803 6.18721 6.20676 6.25091 6.41632 6.42666 6.54374 6.61681 6.81906 6.91430 7.00326 7.03158 7.17105 7.23573 7.47624 7.75436 7.91084 8.08969 8.31361 8.46702 8.72947 8.89104 9.03100 10.23699 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.017010 B = 0.009966 C = 0.006682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.710836 B = 2808.917934 C = 4189.181554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.325 6.325 3 C 0.110 3.890 4 C -0.214 4.214 5 C 0.121 3.879 6 C -0.459 4.459 7 H 0.080 0.920 8 C 0.074 3.926 9 N -0.805 5.805 10 Si 0.906 3.094 11 H -0.265 1.265 12 H -0.279 1.279 13 H -0.266 1.266 14 C -0.171 4.171 15 C -0.041 4.041 16 C -0.136 4.136 17 C -0.137 4.137 18 C -0.133 4.133 19 C -0.024 4.024 20 O -0.322 6.322 21 C 0.038 3.962 22 H 0.080 0.920 23 H 0.044 0.956 24 H 0.055 0.945 25 H 0.137 0.863 26 H 0.278 0.722 27 H 0.083 0.917 28 H 0.040 0.960 29 H 0.052 0.948 30 H 0.043 0.957 31 H 0.051 0.949 32 H 0.041 0.959 33 H 0.044 0.956 34 H 0.103 0.897 35 H 0.040 0.960 36 H 0.040 0.960 37 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.206 -0.531 -1.674 4.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.240 6.240 3 C 0.066 3.934 4 C -0.234 4.234 5 C 0.118 3.882 6 C -0.489 4.489 7 H 0.098 0.902 8 C -0.142 4.142 9 N -0.431 5.431 10 Si 0.731 3.269 11 H -0.190 1.190 12 H -0.205 1.205 13 H -0.191 1.191 14 C -0.173 4.173 15 C -0.059 4.059 16 C -0.193 4.193 17 C -0.194 4.194 18 C -0.152 4.152 19 C -0.068 4.068 20 O -0.238 6.238 21 C -0.058 4.058 22 H 0.098 0.902 23 H 0.063 0.937 24 H 0.073 0.927 25 H 0.154 0.846 26 H 0.089 0.911 27 H 0.101 0.899 28 H 0.060 0.940 29 H 0.071 0.929 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.121 0.879 35 H 0.058 0.942 36 H 0.059 0.941 37 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 4.019 -0.976 -1.521 4.407 hybrid contribution -0.605 0.945 0.030 1.123 sum 3.414 -0.031 -1.491 3.726 Atomic orbital electron populations 1.22788 0.80211 1.01488 1.01439 1.85976 1.19816 1.28121 1.90065 1.18238 0.88574 0.84439 1.02191 1.21311 0.99879 0.90306 1.11889 1.17202 0.89999 0.92601 0.88352 1.19389 0.99344 0.96983 1.33214 0.90178 1.25848 0.98220 0.97120 0.92964 1.69813 1.19550 1.30828 1.22958 0.86396 0.79181 0.81768 0.79534 1.18981 1.20455 1.19070 1.19192 0.93391 0.92588 1.12122 1.19816 0.96195 0.96685 0.93202 1.21814 0.98738 0.99613 0.99151 1.21826 0.99538 0.99633 0.98414 1.20037 0.97680 0.91188 1.06320 1.17837 0.87547 0.84835 1.16578 1.85936 1.16603 1.29788 1.91462 1.22695 0.81455 1.01580 1.00054 0.90182 0.93725 0.92654 0.84596 0.91070 0.89871 0.94043 0.92868 0.93767 0.92989 0.94025 0.93721 0.87899 0.94151 0.94126 0.90115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.69 9.81 101.05 0.99 1.69 16 2 O -0.33 -7.65 10.28 -34.18 -0.35 -8.00 16 3 C 0.11 2.77 6.70 -39.14 -0.26 2.51 16 4 C -0.21 -5.53 7.63 -38.77 -0.30 -5.83 16 5 C 0.12 3.12 5.54 -106.82 -0.59 2.53 16 6 C -0.46 -11.66 8.16 -37.85 -0.31 -11.97 16 7 H 0.08 1.95 6.45 -52.49 -0.34 1.61 16 8 C 0.07 1.82 5.22 -17.34 -0.09 1.73 16 9 N -0.80 -20.32 10.92 55.54 0.61 -19.71 16 10 Si 0.91 18.39 29.58 -169.99 -5.03 13.36 16 11 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 12 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 13 H -0.27 -5.35 7.11 56.52 0.40 -4.94 16 14 C -0.17 -3.99 4.82 -104.27 -0.50 -4.49 16 15 C -0.04 -0.81 2.92 -91.77 -0.27 -1.08 16 16 C -0.14 -2.38 8.94 37.16 0.33 -2.05 16 17 C -0.14 -2.34 9.05 37.15 0.34 -2.01 16 18 C -0.13 -2.99 7.65 -39.88 -0.31 -3.30 16 19 C -0.02 -0.59 6.73 -38.65 -0.26 -0.85 16 20 O -0.32 -7.18 10.27 -33.47 -0.34 -7.52 16 21 C 0.04 0.63 9.80 101.05 0.99 1.62 16 22 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 23 H 0.04 0.83 7.66 -51.93 -0.40 0.43 16 24 H 0.05 1.09 7.66 -51.93 -0.40 0.69 16 25 H 0.14 3.53 4.51 -52.49 -0.24 3.30 16 26 H 0.28 6.47 8.30 -40.82 -0.34 6.13 16 27 H 0.08 1.75 5.79 -51.93 -0.30 1.45 16 28 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 30 H 0.04 0.73 7.10 -51.93 -0.37 0.36 16 31 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.04 0.73 7.67 -51.93 -0.40 0.33 16 34 H 0.10 2.03 5.23 -52.49 -0.27 1.76 16 35 H 0.04 0.62 7.63 -51.93 -0.40 0.23 16 36 H 0.04 0.64 7.66 -51.93 -0.40 0.24 16 37 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 299.85 15.07 4.52 4.52 Total: -1.00 -28.46 299.85 -6.01 -34.47 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -5.18 Total: 4.37 kcal Atomic # 6 Polarization: -21.25 SS G_CDS: -0.23 Total: -21.48 kcal Atomic # 7 Polarization: -20.32 SS G_CDS: 0.61 Total: -19.71 kcal Atomic # 8 Polarization: -14.83 SS G_CDS: -0.69 Total: -15.52 kcal Atomic # 14 Polarization: 18.39 SS G_CDS: -5.03 Total: 13.36 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -28.46 -6.01 -34.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000199430727.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.038 kcal (2) G-P(sol) polarization free energy of solvation -28.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds