Wall clock time and date at job start Mon Mar 30 2020 05:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35967 * 117.00001 * 2 1 4 4 C 1.37828 * 120.01968 * 0.02562 * 3 2 1 5 5 C 1.40790 * 119.64487 * 179.97438 * 4 3 2 6 6 C 1.41200 * 120.15654 * 180.02562 * 5 4 3 7 7 H 1.07998 * 119.99975 * 208.93198 * 6 5 4 8 8 C 1.39874 * 120.00136 * 28.93501 * 6 5 4 9 9 N 1.30890 * 119.99797 * 12.09348 * 8 6 5 10 10 Si 1.86800 * 120.00085 * 192.09558 * 8 6 5 11 11 H 1.48499 * 109.46952 * 59.99759 * 10 8 6 12 12 H 1.48499 * 109.47170 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.47078 * 299.99871 * 10 8 6 14 14 C 1.40850 * 119.68673 * 359.97438 * 5 4 3 15 15 C 1.50700 * 119.98767 * 180.02562 * 14 5 4 16 16 C 1.53004 * 109.47056 * 125.10949 * 15 14 5 17 17 C 1.52994 * 109.47334 * 245.11033 * 15 14 5 18 18 C 1.36463 * 120.02538 * 0.02562 * 14 5 4 19 19 C 1.39151 * 120.36222 * 359.70360 * 18 14 5 20 20 O 1.35741 * 119.84163 * 180.27713 * 19 18 14 21 21 C 1.42903 * 116.99679 * 0.27020 * 20 19 18 22 22 H 1.08991 * 109.47094 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47236 * 60.00098 * 1 2 3 24 24 H 1.09005 * 109.47036 * 300.00214 * 1 2 3 25 25 H 1.08001 * 120.17425 * 359.95040 * 4 3 2 26 26 H 0.96999 * 119.99629 * 180.02562 * 9 8 6 27 27 H 1.09001 * 109.46712 * 5.11338 * 15 14 5 28 28 H 1.08999 * 109.47188 * 180.02562 * 16 15 14 29 29 H 1.09002 * 109.47016 * 300.00114 * 16 15 14 30 30 H 1.08997 * 109.46991 * 59.99825 * 16 15 14 31 31 H 1.08998 * 109.47262 * 59.99608 * 17 15 14 32 32 H 1.09000 * 109.47218 * 180.02562 * 17 15 14 33 33 H 1.09006 * 109.47163 * 300.00197 * 17 15 14 34 34 H 1.08001 * 119.81344 * 179.97438 * 18 14 5 35 35 H 1.09000 * 109.47582 * 299.99984 * 21 20 19 36 36 H 1.09001 * 109.47082 * 60.00860 * 21 20 19 37 37 H 1.09002 * 109.46902 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2960 2.3677 0.0005 5 6 1.9434 3.6179 0.0011 6 6 1.1854 4.8092 0.0022 7 1 1.5859 5.7045 -0.4499 8 6 -0.0842 4.8298 0.5888 9 7 -0.4750 3.8305 1.3385 10 14 -1.2221 6.2832 0.3022 11 1 -1.4960 6.4184 -1.1510 12 1 -2.4989 6.0629 1.0278 13 1 -0.5760 7.5236 0.8016 14 6 3.3508 3.6747 0.0016 15 6 4.0507 5.0093 0.0028 16 6 5.0219 5.0748 1.1833 17 6 4.8257 5.1799 -1.3053 18 6 4.0807 2.5217 0.0011 19 6 3.4425 1.2852 0.0062 20 8 4.1790 0.1450 0.0113 21 6 5.6005 0.2909 0.0171 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 0.5139 0.8900 25 1 0.2173 2.3148 0.0001 26 1 -1.3556 3.8446 1.7450 27 1 3.3129 5.8064 0.0947 28 1 5.5279 6.0402 1.1844 29 1 4.4698 4.9532 2.1152 30 1 5.7596 4.2776 1.0914 31 1 4.1338 5.1332 -2.1462 32 1 5.3323 6.1450 -1.3042 33 1 5.5635 4.3827 -1.3971 34 1 5.1597 2.5693 0.0011 35 1 5.9133 0.8376 -0.8725 36 1 5.9057 0.8406 0.9075 37 1 6.0669 -0.6943 0.0213 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000199430727.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:58:39 Heat of formation + Delta-G solvation = -86.114914 kcal Electronic energy + Delta-G solvation = -18979.627298 eV Core-core repulsion = 16107.464404 eV Total energy + Delta-G solvation = -2872.162894 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.00736 -39.02875 -38.48174 -35.75847 -34.52510 -31.14669 -30.01143 -28.49895 -27.88138 -27.81713 -26.31391 -23.33453 -22.57310 -20.60637 -19.51769 -18.60585 -17.38847 -17.18773 -16.66420 -16.46950 -15.90113 -15.45367 -15.22101 -14.93605 -14.85024 -14.14930 -14.00254 -13.69619 -13.27538 -13.06979 -12.92297 -12.85135 -12.71575 -12.56227 -12.26104 -12.09311 -11.98333 -11.82864 -11.77284 -11.30864 -11.11483 -10.99188 -10.73357 -9.10021 -8.64061 -8.34409 -6.20878 0.98913 1.04321 1.40164 1.49965 1.53547 2.23540 2.70273 2.76493 2.87509 3.65546 4.19190 4.22665 4.41140 4.44080 4.48921 4.51279 4.53089 4.58073 4.69580 4.77416 4.89190 4.91705 4.92161 5.01634 5.08121 5.16611 5.22746 5.27885 5.41393 5.48609 5.60535 5.75293 5.93322 6.05658 6.25885 6.54387 6.63372 6.88992 7.01291 7.22531 8.42936 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.017010 B = 0.009966 C = 0.006682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.710836 B = 2808.917934 C = 4189.181554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.339 6.339 3 C 0.085 3.915 4 C -0.232 4.232 5 C 0.086 3.914 6 C -0.484 4.484 7 H 0.083 0.917 8 C 0.033 3.967 9 N -0.836 5.836 10 Si 0.976 3.024 11 H -0.262 1.262 12 H -0.273 1.273 13 H -0.260 1.260 14 C -0.174 4.174 15 C -0.044 4.044 16 C -0.130 4.130 17 C -0.129 4.129 18 C -0.133 4.133 19 C -0.032 4.032 20 O -0.344 6.344 21 C 0.028 3.972 22 H 0.122 0.878 23 H 0.043 0.957 24 H 0.041 0.959 25 H 0.125 0.875 26 H 0.283 0.717 27 H 0.065 0.935 28 H 0.070 0.930 29 H 0.033 0.967 30 H 0.055 0.945 31 H 0.038 0.962 32 H 0.069 0.931 33 H 0.054 0.946 34 H 0.133 0.867 35 H 0.052 0.948 36 H 0.049 0.951 37 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.636 0.118 -1.985 5.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.254 6.254 3 C 0.041 3.959 4 C -0.252 4.252 5 C 0.083 3.917 6 C -0.514 4.514 7 H 0.101 0.899 8 C -0.180 4.180 9 N -0.464 5.464 10 Si 0.797 3.203 11 H -0.187 1.187 12 H -0.198 1.198 13 H -0.184 1.184 14 C -0.176 4.176 15 C -0.062 4.062 16 C -0.187 4.187 17 C -0.187 4.187 18 C -0.151 4.151 19 C -0.076 4.076 20 O -0.260 6.260 21 C -0.067 4.067 22 H 0.140 0.860 23 H 0.062 0.938 24 H 0.060 0.940 25 H 0.143 0.857 26 H 0.094 0.906 27 H 0.083 0.917 28 H 0.089 0.911 29 H 0.052 0.948 30 H 0.074 0.926 31 H 0.057 0.943 32 H 0.088 0.912 33 H 0.073 0.927 34 H 0.151 0.849 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 5.467 -0.338 -1.833 5.776 hybrid contribution -0.954 0.638 0.132 1.156 sum 4.513 0.301 -1.701 4.832 Atomic orbital electron populations 1.22983 0.78269 1.03930 1.00689 1.85936 1.21855 1.27577 1.90058 1.18516 0.89652 0.84729 1.03002 1.21302 0.99596 0.91049 1.13285 1.17629 0.91643 0.92847 0.89551 1.19611 1.00486 0.97093 1.34202 0.89943 1.26659 0.99279 0.99800 0.92260 1.69892 1.20123 1.32644 1.23705 0.85342 0.77167 0.78377 0.79388 1.18683 1.19763 1.18410 1.19652 0.92835 0.94722 1.10354 1.19871 0.96495 0.94062 0.95805 1.21753 0.98224 1.01778 0.96950 1.21749 0.99181 1.01660 0.96082 1.20303 0.99093 0.90280 1.05451 1.18117 0.87684 0.86056 1.15713 1.85897 1.19474 1.29271 1.91332 1.23068 0.78468 1.04158 1.00975 0.86028 0.93846 0.94046 0.85727 0.90641 0.91652 0.91123 0.94809 0.92564 0.94309 0.91159 0.92699 0.84934 0.92937 0.93257 0.86832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.40 9.81 113.37 1.11 2.51 16 2 O -0.34 -16.27 10.28 -79.28 -0.81 -17.08 16 3 C 0.09 4.42 6.70 22.55 0.15 4.57 16 4 C -0.23 -12.50 7.63 22.80 0.17 -12.32 16 5 C 0.09 4.55 5.54 -21.29 -0.12 4.44 16 6 C -0.48 -25.23 8.16 23.39 0.19 -25.04 16 7 H 0.08 4.10 6.45 -2.91 -0.02 4.08 16 8 C 0.03 1.64 5.22 85.23 0.45 2.09 16 9 N -0.84 -43.56 10.92 21.82 0.24 -43.32 16 10 Si 0.98 38.05 29.58 68.60 2.03 40.08 16 11 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 12 H -0.27 -10.24 7.11 99.48 0.71 -9.53 16 13 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 14 C -0.17 -8.11 4.82 -19.64 -0.09 -8.20 16 15 C -0.04 -1.69 2.92 -11.54 -0.03 -1.72 16 16 C -0.13 -4.25 8.94 71.98 0.64 -3.61 16 17 C -0.13 -4.12 9.05 71.98 0.65 -3.47 16 18 C -0.13 -5.83 7.65 22.07 0.17 -5.66 16 19 C -0.03 -1.53 6.73 22.87 0.15 -1.37 16 20 O -0.34 -14.95 10.27 -76.75 -0.79 -15.73 16 21 C 0.03 0.85 9.80 113.37 1.11 1.96 16 22 H 0.12 3.59 8.14 -2.39 -0.02 3.57 16 23 H 0.04 1.66 7.66 -2.39 -0.02 1.64 16 24 H 0.04 1.69 7.66 -2.38 -0.02 1.68 16 25 H 0.13 6.83 4.51 -2.91 -0.01 6.81 16 26 H 0.28 13.52 8.30 -92.71 -0.77 12.75 16 27 H 0.07 2.73 5.79 -2.39 -0.01 2.72 16 28 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.06 1.69 7.10 -2.39 -0.02 1.67 16 31 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.05 1.62 7.67 -2.38 -0.02 1.60 16 34 H 0.13 4.89 5.23 -2.91 -0.02 4.87 16 35 H 0.05 1.46 7.63 -2.39 -0.02 1.44 16 36 H 0.05 1.40 7.66 -2.39 -0.02 1.39 16 37 H 0.11 2.66 8.14 -2.39 -0.02 2.64 16 Total: -1.00 -63.08 299.85 6.29 -56.79 By element: Atomic # 1 Polarization: 24.03 SS G_CDS: 1.07 Total: 25.10 kcal Atomic # 6 Polarization: -50.39 SS G_CDS: 4.56 Total: -45.83 kcal Atomic # 7 Polarization: -43.56 SS G_CDS: 0.24 Total: -43.32 kcal Atomic # 8 Polarization: -31.21 SS G_CDS: -1.60 Total: -32.82 kcal Atomic # 14 Polarization: 38.05 SS G_CDS: 2.03 Total: 40.08 kcal Total: -63.08 6.29 -56.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000199430727.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.324 kcal (2) G-P(sol) polarization free energy of solvation -63.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds