Wall clock time and date at job start Mon Mar 30 2020 05:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35993 * 117.00114 * 2 1 4 4 C 1.38566 * 120.07535 * 93.22157 * 3 2 1 5 5 C 1.50701 * 120.00186 * 359.97438 * 4 3 2 6 6 C 1.38247 * 119.99689 * 180.25370 * 4 3 2 7 7 C 1.38249 * 120.14947 * 359.49295 * 6 4 3 8 8 C 1.38246 * 120.14381 * 0.27522 * 7 6 4 9 9 C 1.50706 * 119.99763 * 179.97438 * 8 7 6 10 10 H 1.08997 * 109.46863 * 179.97438 * 9 8 7 11 11 C 1.52992 * 109.47188 * 60.00092 * 9 8 7 12 12 C 1.50696 * 109.47112 * 299.99928 * 9 8 7 13 13 H 1.08006 * 120.00196 * 0.02562 * 12 9 8 14 14 C 1.37870 * 120.00043 * 180.02562 * 12 9 8 15 15 N 1.31519 * 120.00319 * 359.97438 * 14 12 9 16 16 Si 1.86805 * 120.00276 * 179.97438 * 14 12 9 17 17 H 1.48495 * 109.46966 * 59.99826 * 16 14 12 18 18 H 1.48502 * 109.47274 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.46925 * 300.00206 * 16 14 12 20 20 C 1.38562 * 120.00165 * 359.97438 * 8 7 6 21 21 O 1.35988 * 120.07555 * 179.97438 * 20 8 7 22 22 C 1.42906 * 117.00093 * 95.04501 * 21 20 8 23 23 H 1.09005 * 109.47336 * 304.64618 * 1 2 3 24 24 H 1.09002 * 109.46979 * 64.64188 * 1 2 3 25 25 H 1.08998 * 109.47283 * 184.64671 * 1 2 3 26 26 H 1.08993 * 109.46960 * 270.25606 * 5 4 3 27 27 H 1.08996 * 109.46817 * 30.25726 * 5 4 3 28 28 H 1.09003 * 109.46676 * 150.25264 * 5 4 3 29 29 H 1.07999 * 119.92439 * 179.76768 * 6 4 3 30 30 H 1.07996 * 119.92905 * 180.25606 * 7 6 4 31 31 H 1.09007 * 109.47061 * 299.99820 * 11 9 8 32 32 H 1.09004 * 109.47852 * 59.99711 * 11 9 8 33 33 H 1.09004 * 109.47561 * 179.97438 * 11 9 8 34 34 H 0.96994 * 120.00408 * 180.02562 * 15 14 12 35 35 H 1.09001 * 109.46507 * 56.30404 * 22 21 20 36 36 H 1.08998 * 109.47305 * 176.30239 * 22 21 20 37 37 H 1.09004 * 109.46866 * 296.30573 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 2.4217 1.7998 1.1972 5 6 2.1453 1.0970 2.5013 6 6 3.0446 3.0340 1.1956 7 6 3.3039 3.6794 0.0008 8 6 2.9363 3.0960 -1.1974 9 6 3.2201 3.8027 -2.4979 10 1 2.8617 3.1938 -3.3279 11 6 4.7274 4.0222 -2.6407 12 6 2.5151 5.1345 -2.5101 13 1 1.9212 5.4390 -1.6608 14 6 2.6280 5.9643 -3.6053 15 7 3.3515 5.5938 -4.6392 16 14 1.7536 7.6149 -3.6207 17 1 2.2421 8.4445 -2.4902 18 1 2.0333 8.3114 -4.9022 19 1 0.2906 7.4013 -3.4819 20 6 2.3071 1.8615 -1.2026 21 8 1.9444 1.2864 -2.3804 22 6 2.8585 0.3492 -2.9534 23 1 -0.3634 0.5843 0.8455 24 1 -0.3633 0.4401 -0.9287 25 1 -0.3634 -1.0243 0.0833 26 1 1.1628 1.3902 2.8709 27 1 2.1676 0.0185 2.3446 28 1 2.9058 1.3738 3.2315 29 1 3.3332 3.4930 2.1296 30 1 3.7943 4.6416 0.0035 31 1 5.0862 4.6309 -1.8106 32 1 5.2375 3.0589 -2.6318 33 1 4.9327 4.5330 -3.5815 34 1 3.4313 6.1778 -5.4096 35 1 3.0650 -0.4431 -2.2339 36 1 2.4202 -0.0822 -3.8532 37 1 3.7876 0.8583 -3.2099 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000203711478.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:41 Heat of formation + Delta-G solvation = -78.137479 kcal Electronic energy + Delta-G solvation = -18978.506757 eV Core-core repulsion = 16106.689790 eV Total energy + Delta-G solvation = -2871.816967 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.47556 -38.87643 -38.19582 -36.16838 -33.69680 -31.46519 -30.78067 -28.43816 -27.41121 -27.25144 -26.81831 -23.57543 -22.99161 -21.32097 -18.71639 -18.23923 -17.81027 -17.48873 -16.80469 -16.58744 -15.99775 -15.52469 -15.42849 -14.75887 -14.59847 -14.28983 -14.22257 -13.57646 -13.43072 -13.09638 -13.06978 -12.82594 -12.78650 -12.58192 -12.46275 -12.22490 -12.06587 -11.99460 -11.53731 -11.38737 -10.99514 -10.48811 -10.36165 -9.41704 -9.19778 -8.09437 -6.23254 0.21253 0.41743 1.40782 1.42397 1.50016 2.37128 2.48382 2.86423 3.14945 3.19522 3.95750 4.12949 4.36201 4.40748 4.44851 4.46577 4.50478 4.51244 4.57087 4.68877 4.76528 4.77747 4.85999 4.89942 4.90765 5.07242 5.22158 5.32609 5.44819 5.47865 5.56655 5.65770 5.83832 6.02923 6.05025 6.33113 6.36185 6.80131 6.84870 7.43697 8.95288 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.024728 B = 0.007095 C = 0.006553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.049812 B = 3945.513926 C = 4271.789768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.341 6.341 3 C 0.062 3.938 4 C -0.115 4.115 5 C -0.098 4.098 6 C -0.108 4.108 7 C -0.113 4.113 8 C -0.074 4.074 9 C 0.078 3.922 10 H 0.007 0.993 11 C -0.120 4.120 12 C -0.521 4.521 13 H 0.050 0.950 14 C 0.014 3.986 15 N -0.917 5.917 16 Si 0.955 3.045 17 H -0.267 1.267 18 H -0.282 1.282 19 H -0.276 1.276 20 C 0.047 3.953 21 O -0.350 6.350 22 C 0.042 3.958 23 H 0.053 0.947 24 H 0.031 0.969 25 H 0.120 0.880 26 H 0.078 0.922 27 H 0.069 0.931 28 H 0.086 0.914 29 H 0.159 0.841 30 H 0.125 0.875 31 H 0.036 0.964 32 H 0.019 0.981 33 H 0.060 0.940 34 H 0.262 0.738 35 H 0.054 0.946 36 H 0.108 0.892 37 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.221 -9.439 11.811 15.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.259 6.259 3 C 0.018 3.982 4 C -0.115 4.115 5 C -0.154 4.154 6 C -0.126 4.126 7 C -0.131 4.131 8 C -0.074 4.074 9 C 0.059 3.941 10 H 0.026 0.974 11 C -0.178 4.178 12 C -0.559 4.559 13 H 0.068 0.932 14 C -0.184 4.184 15 N -0.557 5.557 16 Si 0.780 3.220 17 H -0.192 1.192 18 H -0.207 1.207 19 H -0.202 1.202 20 C 0.003 3.997 21 O -0.267 6.267 22 C -0.052 4.052 23 H 0.072 0.928 24 H 0.050 0.950 25 H 0.138 0.862 26 H 0.096 0.904 27 H 0.088 0.912 28 H 0.105 0.895 29 H 0.176 0.824 30 H 0.143 0.857 31 H 0.055 0.945 32 H 0.038 0.962 33 H 0.079 0.921 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.126 0.874 37 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -2.248 -9.539 11.527 15.130 hybrid contribution -0.312 1.089 -0.794 1.383 sum -2.559 -8.450 10.733 13.898 Atomic orbital electron populations 1.23112 0.77781 1.04437 1.00454 1.85881 1.21176 1.24405 1.94395 1.18933 1.00494 0.87231 0.91531 1.20321 1.00712 0.95315 0.95198 1.20652 1.02919 1.00062 0.91813 1.21260 0.98853 0.94051 0.98399 1.21093 1.00368 1.00183 0.91428 1.20736 0.95027 0.93645 0.98003 1.17579 0.93583 0.93748 0.89169 0.97435 1.21635 0.96483 0.97849 1.01802 1.21322 1.30034 1.02268 1.02246 0.93162 1.25713 0.96010 1.01620 0.95077 1.70007 1.40748 1.38338 1.06573 0.85667 0.78938 0.79835 0.77576 1.19159 1.20725 1.20166 1.19210 1.01826 0.93197 0.85433 1.85932 1.45456 1.59637 1.35681 1.23012 0.92898 0.90674 0.98629 0.92825 0.95047 0.86202 0.90377 0.91233 0.89472 0.82372 0.85722 0.94522 0.96219 0.92084 0.92911 0.92709 0.87402 0.94985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.91 11.13 113.37 1.26 2.17 16 2 O -0.34 -10.98 9.25 -79.60 -0.74 -11.72 16 3 C 0.06 2.24 5.71 22.57 0.13 2.37 16 4 C -0.11 -3.52 5.89 -19.78 -0.12 -3.64 16 5 C -0.10 -2.09 9.79 71.24 0.70 -1.39 16 6 C -0.11 -3.36 9.69 22.27 0.22 -3.14 16 7 C -0.11 -4.43 8.71 22.27 0.19 -4.24 16 8 C -0.07 -3.38 4.75 -19.78 -0.09 -3.47 16 9 C 0.08 4.13 2.44 -12.29 -0.03 4.10 16 10 H 0.01 0.45 6.97 -2.39 -0.02 0.43 16 11 C -0.12 -6.02 8.78 71.98 0.63 -5.39 16 12 C -0.52 -29.56 8.24 25.60 0.21 -29.35 16 13 H 0.05 2.83 7.60 -2.91 -0.02 2.81 16 14 C 0.01 0.81 5.30 84.65 0.45 1.26 16 15 N -0.92 -53.89 11.32 21.45 0.24 -53.65 16 16 Si 0.95 44.35 29.54 68.60 2.03 46.37 16 17 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 18 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 19 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 20 C 0.05 2.03 5.71 22.57 0.13 2.16 16 21 O -0.35 -15.34 8.97 -79.55 -0.71 -16.05 16 22 C 0.04 1.47 11.11 113.37 1.26 2.73 16 23 H 0.05 1.21 8.14 -2.38 -0.02 1.19 16 24 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.12 2.18 8.14 -2.39 -0.02 2.16 16 26 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.07 1.48 7.53 -2.39 -0.02 1.47 16 28 H 0.09 1.47 8.09 -2.39 -0.02 1.45 16 29 H 0.16 3.64 8.06 -2.91 -0.02 3.62 16 30 H 0.12 4.90 7.57 -2.91 -0.02 4.88 16 31 H 0.04 1.71 7.39 -2.38 -0.02 1.70 16 32 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.06 3.36 6.07 -2.39 -0.01 3.34 16 34 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 35 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.11 3.19 8.14 -2.39 -0.02 3.17 16 37 H 0.03 1.19 8.14 -2.38 -0.02 1.17 16 Total: -1.00 -66.76 310.38 6.80 -59.96 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: 1.04 Total: 10.92 kcal Atomic # 6 Polarization: -40.77 SS G_CDS: 4.94 Total: -35.83 kcal Atomic # 7 Polarization: -53.89 SS G_CDS: 0.24 Total: -53.65 kcal Atomic # 8 Polarization: -26.32 SS G_CDS: -1.45 Total: -27.77 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.37 kcal Total: -66.76 6.80 -59.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000203711478.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.180 kcal (2) G-P(sol) polarization free energy of solvation -66.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds