Wall clock time and date at job start Mon Mar 30 2020 06:01:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35693 * 117.00299 * 2 1 4 4 C 1.39488 * 119.77033 * 359.97438 * 3 2 1 5 5 C 1.36304 * 120.45916 * 179.97438 * 4 3 2 6 6 C 1.40818 * 119.98438 * 0.02562 * 5 4 3 7 7 C 1.41019 * 120.22136 * 180.02562 * 6 5 4 8 8 H 1.08006 * 119.99807 * 204.84766 * 7 6 5 9 9 C 1.39875 * 120.00323 * 24.85107 * 7 6 5 10 10 N 1.30931 * 119.99594 * 17.75221 * 9 7 6 11 11 Si 1.86794 * 120.00214 * 197.75103 * 9 7 6 12 12 H 1.48502 * 109.47045 * 59.99788 * 11 9 7 13 13 H 1.48500 * 109.47250 * 179.97438 * 11 9 7 14 14 H 1.48495 * 109.47256 * 300.00024 * 11 9 7 15 15 C 1.41429 * 119.55276 * 0.02562 * 6 5 4 16 16 O 1.35658 * 120.22272 * 180.02562 * 15 6 5 17 17 C 1.42893 * 117.00422 * 90.00109 * 16 15 6 18 18 C 1.38160 * 119.54709 * 359.74184 * 15 6 5 19 19 C 1.50702 * 119.99901 * 180.25060 * 18 15 6 20 20 C 1.52998 * 109.46762 * 120.26155 * 19 18 15 21 21 C 1.53001 * 109.47025 * 240.25857 * 19 18 15 22 22 H 1.08992 * 109.47606 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.46662 * 60.00029 * 1 2 3 24 24 H 1.09005 * 109.46851 * 300.00584 * 1 2 3 25 25 H 1.08001 * 119.76815 * 0.02562 * 4 3 2 26 26 H 1.07998 * 120.00658 * 180.02562 * 5 4 3 27 27 H 0.97000 * 119.99676 * 180.02562 * 10 9 7 28 28 H 1.09004 * 109.46807 * 299.99100 * 17 16 15 29 29 H 1.08998 * 109.47298 * 59.99482 * 17 16 15 30 30 H 1.09006 * 109.47350 * 180.02562 * 17 16 15 31 31 H 1.08997 * 109.47255 * 0.26405 * 19 18 15 32 32 H 1.09009 * 109.46776 * 179.97438 * 20 19 18 33 33 H 1.09000 * 109.47473 * 299.99707 * 20 19 18 34 34 H 1.08997 * 109.47032 * 60.00113 * 20 19 18 35 35 H 1.09010 * 109.46987 * 60.00447 * 21 19 18 36 36 H 1.09002 * 109.46940 * 179.97438 * 21 19 18 37 37 H 1.08997 * 109.47551 * 300.00366 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2090 0.0000 4 6 1.2808 2.3758 -0.0005 5 6 1.8850 3.5976 0.0000 6 6 3.2903 3.6878 0.0005 7 6 3.9207 4.9492 0.0016 8 1 4.9214 5.0532 -0.3910 9 6 3.2499 6.0659 0.5112 10 7 2.2094 5.9056 1.2896 11 14 3.8386 7.7857 0.0812 12 1 3.7827 7.9745 -1.3907 13 1 2.9642 8.7878 0.7419 14 1 5.2365 7.9621 0.5501 15 6 4.0652 2.5047 0.0000 16 8 5.4199 2.5757 0.0010 17 6 6.0669 2.6084 1.2746 18 6 3.4330 1.2762 0.0043 19 6 4.2488 0.0090 0.0095 20 6 3.9130 -0.8085 1.2584 21 6 3.9237 -0.8119 -1.2400 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3632 0.5138 -0.8900 24 1 -0.3633 0.5140 0.8900 25 1 0.2027 2.3107 -0.0005 26 1 1.2861 4.4963 0.0000 27 1 1.7440 6.6799 1.6428 28 1 5.7276 3.4814 1.8322 29 1 5.8206 1.7039 1.8307 30 1 7.1462 2.6656 1.1326 31 1 5.3095 0.2598 0.0138 32 1 4.5027 -1.7253 1.2619 33 1 4.1445 -0.2237 2.1486 34 1 2.8522 -1.0592 1.2541 35 1 4.1630 -0.2294 -2.1299 36 1 4.5140 -1.7282 -1.2365 37 1 2.8630 -1.0626 -1.2443 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000216048496.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:41 Heat of formation + Delta-G solvation = -69.613150 kcal Electronic energy + Delta-G solvation = -19190.775144 eV Core-core repulsion = 16319.327820 eV Total energy + Delta-G solvation = -2871.447324 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.30522 -37.53241 -35.29141 -34.79025 -32.96660 -29.07349 -28.58922 -26.95555 -26.47208 -25.71175 -24.47602 -21.99543 -20.42804 -19.48769 -17.15164 -16.97625 -15.80168 -15.08157 -14.96605 -14.82320 -14.24469 -14.12149 -13.70249 -13.24365 -13.08014 -12.58530 -12.30343 -11.95269 -11.70225 -11.65031 -11.39473 -11.24849 -11.12235 -10.83537 -10.76368 -10.58613 -10.41058 -10.09123 -9.85667 -9.76892 -9.47544 -9.02531 -8.60494 -7.33398 -7.00277 -6.76524 -4.25358 2.63253 2.80473 3.05764 3.09307 3.20172 3.92592 4.26122 4.51651 5.07248 5.57734 5.62500 5.64789 5.73725 5.76434 5.92681 5.98238 6.14972 6.16678 6.22216 6.27368 6.36654 6.43597 6.48418 6.56044 6.58382 6.80057 6.91349 6.95267 7.07444 7.25549 7.35089 7.37579 7.76270 7.90108 8.08909 8.33438 8.58580 8.73368 8.83969 9.13730 10.15927 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.024888 B = 0.008102 C = 0.006586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.761281 B = 3455.228757 C = 4250.148043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.321 6.321 3 C 0.010 3.990 4 C -0.176 4.176 5 C -0.126 4.126 6 C 0.081 3.919 7 C -0.446 4.446 8 H 0.083 0.917 9 C 0.073 3.927 10 N -0.798 5.798 11 Si 0.909 3.091 12 H -0.263 1.263 13 H -0.279 1.279 14 H -0.265 1.265 15 C -0.004 4.004 16 O -0.322 6.322 17 C 0.036 3.964 18 C -0.086 4.086 19 C -0.041 4.041 20 C -0.139 4.139 21 C -0.137 4.137 22 H 0.080 0.920 23 H 0.041 0.959 24 H 0.042 0.958 25 H 0.097 0.903 26 H 0.124 0.876 27 H 0.281 0.719 28 H 0.043 0.957 29 H 0.028 0.972 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.040 0.960 33 H 0.043 0.957 34 H 0.067 0.933 35 H 0.047 0.953 36 H 0.040 0.960 37 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.389 -6.223 -0.167 6.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.237 6.237 3 C -0.034 4.034 4 C -0.195 4.195 5 C -0.146 4.146 6 C 0.078 3.922 7 C -0.476 4.476 8 H 0.101 0.899 9 C -0.144 4.144 10 N -0.424 5.424 11 Si 0.733 3.267 12 H -0.188 1.188 13 H -0.204 1.204 14 H -0.190 1.190 15 C -0.049 4.049 16 O -0.239 6.239 17 C -0.059 4.059 18 C -0.087 4.087 19 C -0.059 4.059 20 C -0.196 4.196 21 C -0.194 4.194 22 H 0.098 0.902 23 H 0.060 0.940 24 H 0.060 0.940 25 H 0.115 0.885 26 H 0.141 0.859 27 H 0.091 0.909 28 H 0.062 0.938 29 H 0.047 0.953 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.059 0.941 33 H 0.063 0.937 34 H 0.086 0.914 35 H 0.066 0.934 36 H 0.059 0.941 37 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.347 -6.255 -0.169 6.267 hybrid contribution -0.245 1.146 0.250 1.198 sum -0.592 -5.109 0.081 5.144 Atomic orbital electron populations 1.22715 0.81439 1.01553 1.00370 1.85869 1.18635 1.28148 1.91011 1.18086 0.90649 0.82998 1.11647 1.20645 0.97693 0.93099 1.08025 1.20814 0.94688 0.95833 1.03244 1.17784 0.91556 0.92159 0.90689 1.19386 1.01976 0.91460 1.34754 0.89910 1.25935 0.94148 1.01637 0.92654 1.69854 1.17101 1.32988 1.22434 0.86354 0.79585 0.80725 0.80014 1.18786 1.20435 1.18985 1.18090 0.81972 0.90832 1.14040 1.85913 1.17012 1.93902 1.27043 1.22775 0.96225 0.99778 0.87128 1.18859 0.90180 0.93754 1.05922 1.19737 0.98729 0.92605 0.94825 1.21814 1.02274 0.98279 0.97276 1.21776 1.02068 0.98194 0.97373 0.90158 0.93997 0.93967 0.88483 0.85865 0.90863 0.93803 0.95324 0.91128 0.91257 0.94061 0.93749 0.91413 0.93432 0.94121 0.91532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.54 9.80 101.05 0.99 1.53 16 2 O -0.32 -6.22 6.11 -18.78 -0.11 -6.33 16 3 C 0.01 0.22 6.31 -38.85 -0.25 -0.03 16 4 C -0.18 -4.06 8.96 -39.81 -0.36 -4.41 16 5 C -0.13 -3.24 8.63 -39.30 -0.34 -3.58 16 6 C 0.08 2.16 5.58 -106.65 -0.60 1.56 16 7 C -0.45 -11.84 8.71 -37.92 -0.33 -12.17 16 8 H 0.08 2.19 7.65 -52.48 -0.40 1.79 16 9 C 0.07 1.83 5.13 -17.32 -0.09 1.74 16 10 N -0.80 -20.28 10.97 55.55 0.61 -19.67 16 11 Si 0.91 18.74 29.60 -169.99 -5.03 13.71 16 12 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 13 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 14 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 15 C 0.00 -0.11 5.72 -38.40 -0.22 -0.33 16 16 O -0.32 -7.61 8.55 -18.68 -0.16 -7.77 16 17 C 0.04 0.71 10.86 101.05 1.10 1.81 16 18 C -0.09 -1.97 4.80 -104.38 -0.50 -2.47 16 19 C -0.04 -0.79 2.95 -91.77 -0.27 -1.06 16 20 C -0.14 -2.44 8.98 37.16 0.33 -2.11 16 21 C -0.14 -2.41 8.98 37.16 0.33 -2.08 16 22 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 23 H 0.04 0.62 7.64 -51.93 -0.40 0.22 16 24 H 0.04 0.64 7.64 -51.93 -0.40 0.24 16 25 H 0.10 1.99 6.25 -52.49 -0.33 1.66 16 26 H 0.12 3.23 6.17 -52.49 -0.32 2.91 16 27 H 0.28 6.52 8.30 -40.82 -0.34 6.19 16 28 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.03 0.53 8.07 -51.93 -0.42 0.11 16 30 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 31 H 0.07 1.38 6.70 -51.93 -0.35 1.03 16 32 H 0.04 0.62 8.14 -51.92 -0.42 0.19 16 33 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.07 1.22 6.12 -51.93 -0.32 0.90 16 35 H 0.05 0.86 8.14 -51.92 -0.42 0.44 16 36 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.07 1.19 6.13 -51.93 -0.32 0.87 16 LS Contribution 299.62 15.07 4.52 4.52 Total: -1.00 -27.77 299.62 -5.72 -33.49 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -5.34 Total: 3.67 kcal Atomic # 6 Polarization: -21.42 SS G_CDS: -0.19 Total: -21.61 kcal Atomic # 7 Polarization: -20.28 SS G_CDS: 0.61 Total: -19.67 kcal Atomic # 8 Polarization: -13.83 SS G_CDS: -0.27 Total: -14.10 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -5.03 Total: 13.71 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -27.77 -5.72 -33.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216048496.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.127 kcal (2) G-P(sol) polarization free energy of solvation -27.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds