Wall clock time and date at job start Mon Mar 30 2020 06:01:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35693 * 117.00299 * 2 1 4 4 C 1.39488 * 119.77033 * 359.97438 * 3 2 1 5 5 C 1.36304 * 120.45916 * 179.97438 * 4 3 2 6 6 C 1.40818 * 119.98438 * 0.02562 * 5 4 3 7 7 C 1.41019 * 120.22136 * 180.02562 * 6 5 4 8 8 H 1.08006 * 119.99807 * 204.84766 * 7 6 5 9 9 C 1.39875 * 120.00323 * 24.85107 * 7 6 5 10 10 N 1.30931 * 119.99594 * 17.75221 * 9 7 6 11 11 Si 1.86794 * 120.00214 * 197.75103 * 9 7 6 12 12 H 1.48502 * 109.47045 * 59.99788 * 11 9 7 13 13 H 1.48500 * 109.47250 * 179.97438 * 11 9 7 14 14 H 1.48495 * 109.47256 * 300.00024 * 11 9 7 15 15 C 1.41429 * 119.55276 * 0.02562 * 6 5 4 16 16 O 1.35658 * 120.22272 * 180.02562 * 15 6 5 17 17 C 1.42893 * 117.00422 * 90.00109 * 16 15 6 18 18 C 1.38160 * 119.54709 * 359.74184 * 15 6 5 19 19 C 1.50702 * 119.99901 * 180.25060 * 18 15 6 20 20 C 1.52998 * 109.46762 * 120.26155 * 19 18 15 21 21 C 1.53001 * 109.47025 * 240.25857 * 19 18 15 22 22 H 1.08992 * 109.47606 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.46662 * 60.00029 * 1 2 3 24 24 H 1.09005 * 109.46851 * 300.00584 * 1 2 3 25 25 H 1.08001 * 119.76815 * 0.02562 * 4 3 2 26 26 H 1.07998 * 120.00658 * 180.02562 * 5 4 3 27 27 H 0.97000 * 119.99676 * 180.02562 * 10 9 7 28 28 H 1.09004 * 109.46807 * 299.99100 * 17 16 15 29 29 H 1.08998 * 109.47298 * 59.99482 * 17 16 15 30 30 H 1.09006 * 109.47350 * 180.02562 * 17 16 15 31 31 H 1.08997 * 109.47255 * 0.26405 * 19 18 15 32 32 H 1.09009 * 109.46776 * 179.97438 * 20 19 18 33 33 H 1.09000 * 109.47473 * 299.99707 * 20 19 18 34 34 H 1.08997 * 109.47032 * 60.00113 * 20 19 18 35 35 H 1.09010 * 109.46987 * 60.00447 * 21 19 18 36 36 H 1.09002 * 109.46940 * 179.97438 * 21 19 18 37 37 H 1.08997 * 109.47551 * 300.00366 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2090 0.0000 4 6 1.2808 2.3758 -0.0005 5 6 1.8850 3.5976 0.0000 6 6 3.2903 3.6878 0.0005 7 6 3.9207 4.9492 0.0016 8 1 4.9214 5.0532 -0.3910 9 6 3.2499 6.0659 0.5112 10 7 2.2094 5.9056 1.2896 11 14 3.8386 7.7857 0.0812 12 1 3.7827 7.9745 -1.3907 13 1 2.9642 8.7878 0.7419 14 1 5.2365 7.9621 0.5501 15 6 4.0652 2.5047 0.0000 16 8 5.4199 2.5757 0.0010 17 6 6.0669 2.6084 1.2746 18 6 3.4330 1.2762 0.0043 19 6 4.2488 0.0090 0.0095 20 6 3.9130 -0.8085 1.2584 21 6 3.9237 -0.8119 -1.2400 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3632 0.5138 -0.8900 24 1 -0.3633 0.5140 0.8900 25 1 0.2027 2.3107 -0.0005 26 1 1.2861 4.4963 0.0000 27 1 1.7440 6.6799 1.6428 28 1 5.7276 3.4814 1.8322 29 1 5.8206 1.7039 1.8307 30 1 7.1462 2.6656 1.1326 31 1 5.3095 0.2598 0.0138 32 1 4.5027 -1.7253 1.2619 33 1 4.1445 -0.2237 2.1486 34 1 2.8522 -1.0592 1.2541 35 1 4.1630 -0.2294 -2.1299 36 1 4.5140 -1.7282 -1.2365 37 1 2.8630 -1.0626 -1.2443 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000216048496.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:40 Heat of formation + Delta-G solvation = -84.440066 kcal Electronic energy + Delta-G solvation = -19191.418088 eV Core-core repulsion = 16319.327820 eV Total energy + Delta-G solvation = -2872.090267 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.02817 -39.21701 -37.09709 -36.36446 -34.76970 -30.91545 -30.30044 -28.45842 -27.86281 -27.29478 -26.29589 -23.70570 -22.20143 -21.15686 -18.84927 -18.82660 -17.52281 -16.84634 -16.67692 -16.33710 -15.90666 -15.72110 -15.33116 -14.77030 -14.71608 -14.05467 -13.96503 -13.72313 -13.28290 -13.16806 -13.02987 -12.85168 -12.68738 -12.38530 -12.31580 -12.19346 -11.87015 -11.68142 -11.61668 -11.48948 -11.13594 -10.84097 -10.38529 -9.17663 -8.83281 -8.60726 -6.19644 0.78958 0.99574 1.36742 1.47025 1.52239 2.20626 2.63508 2.77182 3.30606 3.78340 4.06087 4.19969 4.44477 4.49261 4.49349 4.53849 4.56081 4.71539 4.72389 4.81001 4.82670 4.90675 4.93230 5.06844 5.14384 5.15845 5.21172 5.33853 5.48273 5.54444 5.58656 5.62061 5.92661 6.02730 6.22411 6.42004 6.78471 6.92031 6.94294 7.28725 8.33243 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.024888 B = 0.008102 C = 0.006586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.761281 B = 3455.228757 C = 4250.148043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.321 6.321 3 C 0.022 3.978 4 C -0.181 4.181 5 C -0.149 4.149 6 C 0.046 3.954 7 C -0.480 4.480 8 H 0.069 0.931 9 C 0.036 3.964 10 N -0.827 5.827 11 Si 0.977 3.023 12 H -0.263 1.263 13 H -0.266 1.266 14 H -0.262 1.262 15 C -0.016 4.016 16 O -0.337 6.337 17 C 0.038 3.962 18 C -0.099 4.099 19 C -0.042 4.042 20 C -0.132 4.132 21 C -0.130 4.130 22 H 0.119 0.881 23 H 0.046 0.954 24 H 0.043 0.957 25 H 0.121 0.879 26 H 0.109 0.891 27 H 0.288 0.712 28 H 0.022 0.978 29 H 0.039 0.961 30 H 0.106 0.894 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.033 0.967 34 H 0.063 0.937 35 H 0.034 0.966 36 H 0.070 0.930 37 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.376 -7.716 -0.149 7.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.236 6.236 3 C -0.022 4.022 4 C -0.200 4.200 5 C -0.169 4.169 6 C 0.043 3.957 7 C -0.510 4.510 8 H 0.088 0.912 9 C -0.178 4.178 10 N -0.454 5.454 11 Si 0.798 3.202 12 H -0.188 1.188 13 H -0.190 1.190 14 H -0.186 1.186 15 C -0.061 4.061 16 O -0.254 6.254 17 C -0.057 4.057 18 C -0.100 4.100 19 C -0.060 4.060 20 C -0.189 4.189 21 C -0.187 4.187 22 H 0.137 0.863 23 H 0.065 0.935 24 H 0.062 0.938 25 H 0.139 0.861 26 H 0.126 0.874 27 H 0.098 0.902 28 H 0.041 0.959 29 H 0.058 0.942 30 H 0.125 0.875 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.053 0.947 34 H 0.082 0.918 35 H 0.053 0.947 36 H 0.089 0.911 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.346 -7.772 -0.145 7.781 hybrid contribution -0.290 1.417 0.256 1.469 sum -0.636 -6.355 0.111 6.388 Atomic orbital electron populations 1.23066 0.78977 1.04291 1.00675 1.85875 1.21054 1.26202 1.90515 1.18183 0.90771 0.83854 1.09409 1.20882 0.99082 0.92602 1.07442 1.20758 0.94480 0.96374 1.05246 1.18142 0.92415 0.93094 0.92037 1.19447 1.01987 0.92759 1.36815 0.91247 1.26677 0.94169 1.05023 0.91945 1.69895 1.18101 1.34314 1.23043 0.85328 0.79274 0.76001 0.79589 1.18754 1.18988 1.18598 1.18367 0.82582 0.91344 1.13799 1.85834 1.16543 1.93986 1.29046 1.22911 0.97834 0.99301 0.85645 1.19265 0.91076 0.94593 1.05074 1.19818 0.97756 0.91597 0.96841 1.21743 1.02547 0.98990 0.95608 1.21713 1.02441 0.98876 0.95699 0.86298 0.93502 0.93791 0.86134 0.87353 0.90193 0.95918 0.94222 0.87543 0.91782 0.91010 0.94746 0.91781 0.94675 0.91098 0.91745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.69 9.80 113.37 1.11 1.80 16 2 O -0.32 -11.69 6.11 -90.12 -0.55 -12.24 16 3 C 0.02 0.97 6.31 22.74 0.14 1.11 16 4 C -0.18 -8.40 8.96 22.12 0.20 -8.20 16 5 C -0.15 -7.90 8.63 22.45 0.19 -7.71 16 6 C 0.05 2.53 5.58 -21.18 -0.12 2.42 16 7 C -0.48 -26.63 8.71 23.35 0.20 -26.43 16 8 H 0.07 3.87 7.65 -2.91 -0.02 3.85 16 9 C 0.04 1.85 5.13 85.22 0.44 2.28 16 10 N -0.83 -43.34 10.97 21.82 0.24 -43.10 16 11 Si 0.98 39.17 29.60 68.60 2.03 41.20 16 12 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 13 H -0.27 -9.95 7.11 99.48 0.71 -9.24 16 14 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 15 C -0.02 -0.83 5.72 23.04 0.13 -0.70 16 16 O -0.34 -16.17 8.55 -89.74 -0.77 -16.94 16 17 C 0.04 1.49 10.86 113.37 1.23 2.72 16 18 C -0.10 -4.51 4.80 -19.71 -0.09 -4.61 16 19 C -0.04 -1.55 2.95 -11.54 -0.03 -1.59 16 20 C -0.13 -4.27 8.98 71.98 0.65 -3.62 16 21 C -0.13 -4.27 8.98 71.98 0.65 -3.62 16 22 H 0.12 2.39 8.14 -2.39 -0.02 2.37 16 23 H 0.05 1.26 7.64 -2.39 -0.02 1.24 16 24 H 0.04 1.21 7.64 -2.38 -0.02 1.19 16 25 H 0.12 4.85 6.25 -2.91 -0.02 4.83 16 26 H 0.11 5.95 6.17 -2.91 -0.02 5.93 16 27 H 0.29 13.65 8.30 -92.71 -0.77 12.88 16 28 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.04 1.45 8.07 -2.39 -0.02 1.43 16 30 H 0.11 3.37 8.14 -2.38 -0.02 3.35 16 31 H 0.06 2.44 6.70 -2.39 -0.02 2.43 16 32 H 0.07 1.88 8.14 -2.38 -0.02 1.86 16 33 H 0.03 1.15 8.14 -2.39 -0.02 1.14 16 34 H 0.06 2.12 6.12 -2.39 -0.01 2.10 16 35 H 0.03 1.21 8.14 -2.38 -0.02 1.19 16 36 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.06 2.13 6.13 -2.39 -0.01 2.12 16 Total: -1.00 -61.67 299.62 6.70 -54.96 By element: Atomic # 1 Polarization: 21.19 SS G_CDS: 1.06 Total: 22.25 kcal Atomic # 6 Polarization: -50.84 SS G_CDS: 4.70 Total: -46.14 kcal Atomic # 7 Polarization: -43.34 SS G_CDS: 0.24 Total: -43.10 kcal Atomic # 8 Polarization: -27.85 SS G_CDS: -1.32 Total: -29.17 kcal Atomic # 14 Polarization: 39.17 SS G_CDS: 2.03 Total: 41.20 kcal Total: -61.67 6.70 -54.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216048496.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.475 kcal (2) G-P(sol) polarization free energy of solvation -61.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds