Wall clock time and date at job start Mon Mar 30 2020 05:58:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35701 * 116.99732 * 2 1 4 4 C 1.38409 * 120.15224 * 5.38597 * 3 2 1 5 5 C 1.38236 * 120.22927 * 179.97438 * 4 3 2 6 6 C 1.39328 * 120.53325 * 359.97438 * 5 4 3 7 7 O 1.35960 * 119.84622 * 180.02562 * 6 5 4 8 8 C 1.42893 * 117.00146 * 359.97438 * 7 6 5 9 9 C 1.37895 * 120.30154 * 0.04103 * 6 5 4 10 10 C 1.50700 * 120.12221 * 179.97438 * 9 6 5 11 11 C 1.53001 * 109.47178 * 299.25821 * 10 9 6 12 12 C 1.53004 * 109.46747 * 59.25874 * 10 9 6 13 13 C 1.40700 * 119.76066 * 359.70706 * 9 6 5 14 14 C 1.41131 * 120.26368 * 180.29487 * 13 9 6 15 15 H 1.07999 * 119.99769 * 315.01860 * 14 13 9 16 16 C 1.39922 * 120.00362 * 135.01407 * 14 13 9 17 17 N 1.30872 * 119.99981 * 159.23883 * 16 14 13 18 18 Si 1.86801 * 119.99894 * 339.24015 * 16 14 13 19 19 H 1.48499 * 109.46786 * 95.89876 * 18 16 14 20 20 H 1.48493 * 109.46902 * 215.90252 * 18 16 14 21 21 H 1.48503 * 109.47030 * 335.90080 * 18 16 14 22 22 H 1.08994 * 109.47331 * 295.60705 * 1 2 3 23 23 H 1.08998 * 109.46760 * 175.60490 * 1 2 3 24 24 H 1.09002 * 109.46994 * 55.61123 * 1 2 3 25 25 H 1.08002 * 119.88338 * 0.02562 * 4 3 2 26 26 H 1.07997 * 119.73230 * 180.02562 * 5 4 3 27 27 H 1.08992 * 109.47213 * 60.00126 * 8 7 6 28 28 H 1.09000 * 109.47186 * 180.02562 * 8 7 6 29 29 H 1.09002 * 109.47115 * 299.99774 * 8 7 6 30 30 H 1.08998 * 109.47479 * 179.25319 * 10 9 6 31 31 H 1.09003 * 109.46911 * 59.99622 * 11 10 9 32 32 H 1.08999 * 109.47063 * 179.97438 * 11 10 9 33 33 H 1.08999 * 109.46930 * 299.99758 * 11 10 9 34 34 H 1.08993 * 109.47608 * 59.99635 * 12 10 9 35 35 H 1.08999 * 109.47069 * 180.02562 * 12 10 9 36 36 H 1.09001 * 109.46875 * 299.99450 * 12 10 9 37 37 H 0.96995 * 119.99887 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2091 0.0000 4 6 1.2990 2.3695 0.1123 5 6 1.9249 3.6020 0.1130 6 6 3.3108 3.6922 0.0016 7 8 3.9119 4.9117 0.0043 8 6 3.0616 6.0538 0.1240 9 6 4.0754 2.5503 -0.1118 10 6 5.5741 2.6525 -0.2328 11 6 5.9313 3.4441 -1.4924 12 6 6.1371 3.3686 0.9965 13 6 3.4518 1.2890 -0.1086 14 6 4.2246 0.1132 -0.2178 15 1 5.0166 0.0536 -0.9496 16 6 3.9648 -0.9754 0.6221 17 7 4.3672 -2.1738 0.2835 18 14 3.0438 -0.7180 2.2268 19 1 1.6022 -1.0100 2.0223 20 1 3.5914 -1.6293 3.2634 21 1 3.2056 0.6901 2.6700 22 1 -0.3634 0.4441 0.9267 23 1 -0.3633 -1.0246 -0.0788 24 1 -0.3633 0.5804 -0.8481 25 1 0.2241 2.3117 0.2006 26 1 1.3349 4.5023 0.2016 27 1 2.5081 5.9981 1.0612 28 1 3.6669 6.9602 0.1124 29 1 2.3612 6.0745 -0.7110 30 1 6.0024 1.6524 -0.2985 31 1 5.5029 4.4443 -1.4266 32 1 7.0152 3.5184 -1.5796 33 1 5.5301 2.9339 -2.3681 34 1 5.8826 2.8048 1.8939 35 1 7.2211 3.4430 0.9089 36 1 5.7089 4.3688 1.0622 37 1 4.1868 -2.9284 0.8656 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000216048562.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:58:42 Heat of formation + Delta-G solvation = -59.549838 kcal Electronic energy + Delta-G solvation = -19422.473212 eV Core-core repulsion = 16551.462266 eV Total energy + Delta-G solvation = -2871.010946 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.51381 -38.06868 -35.90545 -33.76660 -33.23878 -30.14331 -28.36218 -26.85447 -26.27233 -26.05451 -24.89596 -21.75848 -20.65355 -19.20267 -17.75863 -16.53696 -16.37638 -15.48355 -15.17190 -14.96486 -14.39954 -14.02965 -13.71717 -13.38823 -12.88404 -12.53309 -12.37543 -12.21061 -11.85938 -11.70526 -11.45064 -11.20838 -11.08655 -10.97818 -10.82863 -10.51822 -10.25338 -10.07413 -9.98204 -9.81492 -9.31048 -9.12785 -8.91866 -7.49274 -6.72780 -6.62013 -4.29165 2.47505 2.71707 3.24600 3.34916 3.44986 4.09849 4.22063 4.52859 4.60335 5.27167 5.50406 5.58618 5.69124 5.74457 5.78434 5.79569 5.90525 6.00213 6.03987 6.10580 6.18425 6.40617 6.43727 6.61360 6.70234 6.74157 6.82351 6.97774 7.10996 7.16136 7.22034 7.41675 7.52037 7.66065 7.82742 8.30562 8.42220 8.52635 8.83295 9.01337 10.31224 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.021112 B = 0.010728 C = 0.008301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.928637 B = 2609.310377 C = 3372.418212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.298 6.298 3 C 0.002 3.998 4 C -0.150 4.150 5 C -0.279 4.279 6 C 0.126 3.874 7 O -0.316 6.316 8 C 0.031 3.969 9 C -0.165 4.165 10 C -0.031 4.031 11 C -0.139 4.139 12 C -0.138 4.138 13 C 0.108 3.892 14 C -0.456 4.456 15 H 0.094 0.906 16 C 0.108 3.892 17 N -0.815 5.815 18 Si 0.903 3.097 19 H -0.256 1.256 20 H -0.294 1.294 21 H -0.258 1.258 22 H 0.037 0.963 23 H 0.083 0.917 24 H 0.043 0.957 25 H 0.102 0.898 26 H 0.102 0.898 27 H 0.044 0.956 28 H 0.084 0.916 29 H 0.044 0.956 30 H 0.085 0.915 31 H 0.059 0.941 32 H 0.039 0.961 33 H 0.045 0.955 34 H 0.046 0.954 35 H 0.039 0.961 36 H 0.059 0.941 37 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.596 8.691 1.053 9.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.212 6.212 3 C -0.042 4.042 4 C -0.170 4.170 5 C -0.298 4.298 6 C 0.082 3.918 7 O -0.231 6.231 8 C -0.064 4.064 9 C -0.168 4.168 10 C -0.050 4.050 11 C -0.196 4.196 12 C -0.196 4.196 13 C 0.105 3.895 14 C -0.485 4.485 15 H 0.112 0.888 16 C -0.110 4.110 17 N -0.440 5.440 18 Si 0.730 3.270 19 H -0.181 1.181 20 H -0.222 1.222 21 H -0.182 1.182 22 H 0.056 0.944 23 H 0.101 0.899 24 H 0.062 0.938 25 H 0.120 0.880 26 H 0.120 0.880 27 H 0.063 0.937 28 H 0.102 0.898 29 H 0.063 0.937 30 H 0.103 0.897 31 H 0.077 0.923 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.058 0.942 36 H 0.078 0.922 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.245 8.266 1.051 8.942 hybrid contribution -1.212 0.244 0.740 1.441 sum -4.458 8.510 1.791 9.772 Atomic orbital electron populations 1.22744 0.81859 1.02073 0.99750 1.86159 1.18125 1.27193 1.89754 1.19305 0.92487 0.83235 1.09161 1.20507 0.97869 0.92339 1.06237 1.20262 0.92896 0.96748 1.19941 1.18554 0.90722 0.83570 0.98909 1.86079 1.35167 1.12650 1.89155 1.22797 0.95418 0.87826 1.00403 1.19040 0.94102 0.89422 1.14193 1.19671 0.91688 0.99854 0.93755 1.21822 0.99200 1.00704 0.97880 1.21805 0.98679 1.00905 0.98182 1.16819 0.87946 0.92725 0.92020 1.18961 1.16529 0.94638 1.18343 0.88808 1.25802 0.92295 0.93519 0.99429 1.69744 1.38623 0.99642 1.35994 0.86383 0.80926 0.79511 0.80213 1.18113 1.22185 1.18175 0.94434 0.89887 0.93825 0.87983 0.88001 0.93718 0.89775 0.93699 0.89656 0.92251 0.94171 0.93605 0.93492 0.94180 0.92183 0.91001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 9.59 101.05 0.97 1.54 16 2 O -0.30 -7.08 6.18 -18.81 -0.12 -7.20 16 3 C 0.00 0.06 5.22 -38.35 -0.20 -0.14 16 4 C -0.15 -3.26 9.02 -39.52 -0.36 -3.61 16 5 C -0.28 -5.79 9.04 -39.18 -0.35 -6.15 16 6 C 0.13 2.72 6.28 -39.30 -0.25 2.47 16 7 O -0.32 -5.89 6.11 -19.62 -0.12 -6.01 16 8 C 0.03 0.44 9.81 101.05 0.99 1.43 16 9 C -0.17 -3.88 4.85 -103.82 -0.50 -4.38 16 10 C -0.03 -0.66 2.85 -91.77 -0.26 -0.92 16 11 C -0.14 -2.58 8.98 37.16 0.33 -2.25 16 12 C -0.14 -2.63 8.97 37.16 0.33 -2.29 16 13 C 0.11 2.78 4.62 -106.70 -0.49 2.28 16 14 C -0.46 -12.49 8.01 -37.85 -0.30 -12.79 16 15 H 0.09 2.68 7.31 -52.49 -0.38 2.30 16 16 C 0.11 2.92 4.87 -17.33 -0.08 2.84 16 17 N -0.81 -22.47 13.93 55.55 0.77 -21.70 16 18 Si 0.90 22.03 24.87 -169.99 -4.23 17.80 16 19 H -0.26 -6.04 6.16 56.52 0.35 -5.69 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 21 H -0.26 -6.51 7.11 56.52 0.40 -6.11 16 22 H 0.04 0.63 7.68 -51.93 -0.40 0.23 16 23 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 24 H 0.04 0.71 7.65 -51.93 -0.40 0.31 16 25 H 0.10 1.92 6.31 -52.49 -0.33 1.59 16 26 H 0.10 1.82 6.26 -52.49 -0.33 1.50 16 27 H 0.04 0.60 7.65 -51.93 -0.40 0.20 16 28 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.04 0.60 7.65 -51.93 -0.40 0.20 16 30 H 0.09 1.94 6.08 -51.93 -0.32 1.63 16 31 H 0.06 1.08 6.19 -51.93 -0.32 0.76 16 32 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.06 1.11 6.07 -51.93 -0.32 0.79 16 37 H 0.28 7.09 8.30 -40.82 -0.34 6.75 16 LS Contribution 289.56 15.07 4.36 4.36 Total: -1.00 -29.15 289.56 -4.81 -33.96 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: -5.31 Total: 0.75 kcal Atomic # 6 Polarization: -21.80 SS G_CDS: -0.18 Total: -21.98 kcal Atomic # 7 Polarization: -22.47 SS G_CDS: 0.77 Total: -21.70 kcal Atomic # 8 Polarization: -12.97 SS G_CDS: -0.24 Total: -13.20 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.23 Total: 17.80 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -29.15 -4.81 -33.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216048562.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.588 kcal (2) G-P(sol) polarization free energy of solvation -29.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds