Wall clock time and date at job start Mon Mar 30 2020 05:58:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35701 * 116.99732 * 2 1 4 4 C 1.38409 * 120.15224 * 5.38597 * 3 2 1 5 5 C 1.38236 * 120.22927 * 179.97438 * 4 3 2 6 6 C 1.39328 * 120.53325 * 359.97438 * 5 4 3 7 7 O 1.35960 * 119.84622 * 180.02562 * 6 5 4 8 8 C 1.42893 * 117.00146 * 359.97438 * 7 6 5 9 9 C 1.37895 * 120.30154 * 0.04103 * 6 5 4 10 10 C 1.50700 * 120.12221 * 179.97438 * 9 6 5 11 11 C 1.53001 * 109.47178 * 299.25821 * 10 9 6 12 12 C 1.53004 * 109.46747 * 59.25874 * 10 9 6 13 13 C 1.40700 * 119.76066 * 359.70706 * 9 6 5 14 14 C 1.41131 * 120.26368 * 180.29487 * 13 9 6 15 15 H 1.07999 * 119.99769 * 315.01860 * 14 13 9 16 16 C 1.39922 * 120.00362 * 135.01407 * 14 13 9 17 17 N 1.30872 * 119.99981 * 159.23883 * 16 14 13 18 18 Si 1.86801 * 119.99894 * 339.24015 * 16 14 13 19 19 H 1.48499 * 109.46786 * 95.89876 * 18 16 14 20 20 H 1.48493 * 109.46902 * 215.90252 * 18 16 14 21 21 H 1.48503 * 109.47030 * 335.90080 * 18 16 14 22 22 H 1.08994 * 109.47331 * 295.60705 * 1 2 3 23 23 H 1.08998 * 109.46760 * 175.60490 * 1 2 3 24 24 H 1.09002 * 109.46994 * 55.61123 * 1 2 3 25 25 H 1.08002 * 119.88338 * 0.02562 * 4 3 2 26 26 H 1.07997 * 119.73230 * 180.02562 * 5 4 3 27 27 H 1.08992 * 109.47213 * 60.00126 * 8 7 6 28 28 H 1.09000 * 109.47186 * 180.02562 * 8 7 6 29 29 H 1.09002 * 109.47115 * 299.99774 * 8 7 6 30 30 H 1.08998 * 109.47479 * 179.25319 * 10 9 6 31 31 H 1.09003 * 109.46911 * 59.99622 * 11 10 9 32 32 H 1.08999 * 109.47063 * 179.97438 * 11 10 9 33 33 H 1.08999 * 109.46930 * 299.99758 * 11 10 9 34 34 H 1.08993 * 109.47608 * 59.99635 * 12 10 9 35 35 H 1.08999 * 109.47069 * 180.02562 * 12 10 9 36 36 H 1.09001 * 109.46875 * 299.99450 * 12 10 9 37 37 H 0.96995 * 119.99887 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2091 0.0000 4 6 1.2990 2.3695 0.1123 5 6 1.9249 3.6020 0.1130 6 6 3.3108 3.6922 0.0016 7 8 3.9119 4.9117 0.0043 8 6 3.0616 6.0538 0.1240 9 6 4.0754 2.5503 -0.1118 10 6 5.5741 2.6525 -0.2328 11 6 5.9313 3.4441 -1.4924 12 6 6.1371 3.3686 0.9965 13 6 3.4518 1.2890 -0.1086 14 6 4.2246 0.1132 -0.2178 15 1 5.0166 0.0536 -0.9496 16 6 3.9648 -0.9754 0.6221 17 7 4.3672 -2.1738 0.2835 18 14 3.0438 -0.7180 2.2268 19 1 1.6022 -1.0100 2.0223 20 1 3.5914 -1.6293 3.2634 21 1 3.2056 0.6901 2.6700 22 1 -0.3634 0.4441 0.9267 23 1 -0.3633 -1.0246 -0.0788 24 1 -0.3633 0.5804 -0.8481 25 1 0.2241 2.3117 0.2006 26 1 1.3349 4.5023 0.2016 27 1 2.5081 5.9981 1.0612 28 1 3.6669 6.9602 0.1124 29 1 2.3612 6.0745 -0.7110 30 1 6.0024 1.6524 -0.2985 31 1 5.5029 4.4443 -1.4266 32 1 7.0152 3.5184 -1.5796 33 1 5.5301 2.9339 -2.3681 34 1 5.8826 2.8048 1.8939 35 1 7.2211 3.4430 0.9089 36 1 5.7089 4.3688 1.0622 37 1 4.1868 -2.9284 0.8656 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000216048562.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:58:42 Heat of formation + Delta-G solvation = -77.182377 kcal Electronic energy + Delta-G solvation = -19423.237816 eV Core-core repulsion = 16551.462266 eV Total energy + Delta-G solvation = -2871.775550 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.17252 -39.66247 -37.52799 -35.42086 -35.14525 -31.94865 -29.90285 -28.28314 -27.79684 -27.46722 -26.71940 -23.41526 -22.39989 -20.86808 -19.54775 -18.23439 -18.00786 -17.12753 -16.87232 -16.35583 -16.14030 -15.63095 -15.21281 -15.06507 -14.67699 -14.13874 -13.96217 -13.87117 -13.36731 -13.30635 -12.95871 -12.80267 -12.75471 -12.57953 -12.31566 -12.17879 -11.89445 -11.80914 -11.70542 -11.44095 -10.94613 -10.84136 -10.81094 -9.30733 -8.68591 -8.32606 -6.30172 0.68898 0.95482 1.31439 1.40789 1.49565 2.28648 2.69373 2.73277 2.93508 3.40420 4.07200 4.23602 4.37378 4.41110 4.45666 4.49970 4.51847 4.53659 4.59497 4.71158 4.75865 4.83634 4.96295 4.97356 5.08777 5.18210 5.21708 5.30361 5.42152 5.54956 5.60861 5.67587 5.76337 5.85564 6.04386 6.40732 6.61624 6.83155 6.94523 7.17028 8.40167 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.021112 B = 0.010728 C = 0.008301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.928637 B = 2609.310377 C = 3372.418212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.329 6.329 3 C -0.009 4.009 4 C -0.155 4.155 5 C -0.258 4.258 6 C 0.121 3.879 7 O -0.322 6.322 8 C 0.020 3.980 9 C -0.172 4.172 10 C -0.039 4.039 11 C -0.128 4.128 12 C -0.130 4.130 13 C 0.074 3.926 14 C -0.483 4.483 15 H 0.056 0.944 16 C 0.074 3.926 17 N -0.863 5.863 18 Si 0.950 3.050 19 H -0.242 1.242 20 H -0.286 1.286 21 H -0.274 1.274 22 H 0.053 0.947 23 H 0.101 0.899 24 H 0.061 0.939 25 H 0.136 0.864 26 H 0.141 0.859 27 H 0.053 0.947 28 H 0.117 0.883 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.030 0.970 34 H 0.029 0.971 35 H 0.063 0.937 36 H 0.070 0.930 37 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.446 11.928 1.721 13.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.245 6.245 3 C -0.054 4.054 4 C -0.174 4.174 5 C -0.278 4.278 6 C 0.076 3.924 7 O -0.237 6.237 8 C -0.075 4.075 9 C -0.174 4.174 10 C -0.057 4.057 11 C -0.186 4.186 12 C -0.187 4.187 13 C 0.071 3.929 14 C -0.514 4.514 15 H 0.074 0.926 16 C -0.138 4.138 17 N -0.492 5.492 18 Si 0.775 3.225 19 H -0.167 1.167 20 H -0.214 1.214 21 H -0.199 1.199 22 H 0.072 0.928 23 H 0.119 0.881 24 H 0.080 0.920 25 H 0.154 0.846 26 H 0.158 0.842 27 H 0.072 0.928 28 H 0.135 0.865 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.049 0.951 34 H 0.048 0.952 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -5.114 11.523 1.716 12.723 hybrid contribution -0.737 -0.411 0.459 0.960 sum -5.851 11.113 2.175 12.746 Atomic orbital electron populations 1.23095 0.79093 1.04013 1.01307 1.86104 1.21122 1.27403 1.89852 1.19484 0.92271 0.84474 1.09124 1.20905 0.99584 0.91608 1.05281 1.20817 0.92944 0.97941 1.16067 1.18568 0.91010 0.84427 0.98393 1.86059 1.36361 1.12527 1.88736 1.23192 0.96136 0.86919 1.01256 1.19419 0.95524 0.89769 1.12707 1.19731 0.90775 0.99089 0.96109 1.21717 1.00737 1.00285 0.95820 1.21722 1.00207 1.00583 0.96183 1.17050 0.89116 0.92951 0.93743 1.18807 1.16932 0.96509 1.19119 0.92619 1.26313 0.93047 0.93209 1.01274 1.69786 1.41713 1.00278 1.37405 0.85686 0.80855 0.78293 0.77689 1.16657 1.21350 1.19865 0.92817 0.88071 0.92026 0.84626 0.84166 0.92788 0.86486 0.92635 0.92725 0.91272 0.91877 0.95059 0.95162 0.91798 0.91160 0.90617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.66 9.59 113.37 1.09 1.75 16 2 O -0.33 -15.47 6.18 -90.21 -0.56 -16.02 16 3 C -0.01 -0.44 5.22 23.07 0.12 -0.32 16 4 C -0.15 -6.21 9.02 22.31 0.20 -6.01 16 5 C -0.26 -9.68 9.04 22.53 0.20 -9.48 16 6 C 0.12 4.88 6.28 22.45 0.14 5.02 16 7 O -0.32 -10.79 6.11 -93.11 -0.57 -11.36 16 8 C 0.02 0.45 9.81 113.37 1.11 1.56 16 9 C -0.17 -8.06 4.85 -19.34 -0.09 -8.15 16 10 C -0.04 -1.64 2.85 -11.54 -0.03 -1.68 16 11 C -0.13 -4.66 8.98 71.98 0.65 -4.02 16 12 C -0.13 -4.79 8.97 71.98 0.65 -4.14 16 13 C 0.07 3.89 4.62 -21.21 -0.10 3.79 16 14 C -0.48 -28.15 8.01 23.39 0.19 -27.97 16 15 H 0.06 3.51 7.31 -2.91 -0.02 3.49 16 16 C 0.07 4.22 4.87 85.24 0.41 4.64 16 17 N -0.86 -50.42 13.93 21.83 0.30 -50.12 16 18 Si 0.95 46.48 24.87 68.60 1.71 48.19 16 19 H -0.24 -11.11 6.16 99.48 0.61 -10.49 16 20 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 21 H -0.27 -13.86 7.11 99.48 0.71 -13.16 16 22 H 0.05 1.61 7.68 -2.39 -0.02 1.59 16 23 H 0.10 2.97 8.14 -2.39 -0.02 2.95 16 24 H 0.06 1.82 7.65 -2.39 -0.02 1.80 16 25 H 0.14 4.46 6.31 -2.91 -0.02 4.45 16 26 H 0.14 4.16 6.26 -2.91 -0.02 4.15 16 27 H 0.05 1.16 7.65 -2.39 -0.02 1.14 16 28 H 0.12 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.06 1.18 7.65 -2.39 -0.02 1.16 16 30 H 0.05 2.65 6.08 -2.39 -0.01 2.63 16 31 H 0.07 2.36 6.19 -2.39 -0.01 2.34 16 32 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.07 2.43 6.07 -2.39 -0.01 2.41 16 37 H 0.28 15.16 8.30 -92.71 -0.77 14.39 16 Total: -1.00 -66.28 289.56 6.39 -59.89 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: 0.97 Total: 14.42 kcal Atomic # 6 Polarization: -49.54 SS G_CDS: 4.54 Total: -45.00 kcal Atomic # 7 Polarization: -50.42 SS G_CDS: 0.30 Total: -50.12 kcal Atomic # 8 Polarization: -26.26 SS G_CDS: -1.13 Total: -27.39 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 1.71 Total: 48.19 kcal Total: -66.28 6.39 -59.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216048562.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.290 kcal (2) G-P(sol) polarization free energy of solvation -66.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds