Wall clock time and date at job start Mon Mar 30 2020 05:58:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.36007 * 117.00141 * 2 1 4 4 C 1.38703 * 120.02315 * 359.97438 * 3 2 1 5 5 C 1.38770 * 120.54246 * 179.97438 * 4 3 2 6 6 C 1.36494 * 120.57762 * 359.97374 * 5 4 3 7 7 C 1.50700 * 119.98772 * 180.02562 * 6 5 4 8 8 C 1.52996 * 109.46938 * 296.81001 * 7 6 5 9 9 C 1.53003 * 109.47084 * 56.80906 * 7 6 5 10 10 C 1.40773 * 120.02311 * 359.97438 * 6 5 4 11 11 C 1.41173 * 120.26430 * 179.97438 * 10 6 5 12 12 H 1.08003 * 120.00223 * 318.97847 * 11 10 6 13 13 C 1.39922 * 119.99984 * 138.98317 * 11 10 6 14 14 N 1.30864 * 120.00011 * 341.03028 * 13 11 10 15 15 Si 1.86805 * 119.99916 * 161.02774 * 13 11 10 16 16 H 1.48498 * 109.47280 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.46899 * 120.00144 * 15 13 11 18 18 H 1.48493 * 109.47387 * 239.99862 * 15 13 11 19 19 C 1.38877 * 120.01894 * 179.71911 * 3 2 1 20 20 O 1.35734 * 120.28908 * 0.02562 * 19 3 2 21 21 C 1.42895 * 117.00125 * 85.42975 * 20 19 3 22 22 H 1.08999 * 109.47784 * 300.00119 * 1 2 3 23 23 H 1.09008 * 109.47576 * 179.97438 * 1 2 3 24 24 H 1.09007 * 109.46924 * 60.00291 * 1 2 3 25 25 H 1.08012 * 119.72862 * 359.97438 * 4 3 2 26 26 H 1.07993 * 119.71270 * 179.97438 * 5 4 3 27 27 H 1.09000 * 109.46830 * 176.81277 * 7 6 5 28 28 H 1.09000 * 109.47418 * 59.99993 * 8 7 6 29 29 H 1.09002 * 109.47093 * 180.02562 * 8 7 6 30 30 H 1.09000 * 109.47450 * 300.00018 * 8 7 6 31 31 H 1.09001 * 109.46810 * 179.97438 * 9 7 6 32 32 H 1.08991 * 109.47036 * 300.00101 * 9 7 6 33 33 H 1.09000 * 109.46662 * 60.00344 * 9 7 6 34 34 H 0.97003 * 120.00030 * 179.97438 * 14 13 11 35 35 H 1.08994 * 109.47441 * 60.00513 * 21 20 19 36 36 H 1.09009 * 109.46900 * 180.02562 * 21 20 19 37 37 H 1.09002 * 109.47424 * 299.99746 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2915 2.3754 -0.0005 5 6 1.9103 3.6175 0.0000 6 6 3.2717 3.7150 0.0016 7 6 3.9298 5.0707 0.0027 8 6 3.5687 5.8139 -1.2849 9 6 3.4407 5.8740 1.2096 10 6 4.0614 2.5496 0.0033 11 6 5.4699 2.6444 0.0044 12 1 5.9618 3.3843 -0.6097 13 6 6.2287 1.7799 0.8010 14 7 5.6679 1.1516 1.8026 15 14 8.0423 1.5226 0.4347 16 1 8.4311 2.3424 -0.7408 17 1 8.8483 1.9334 1.6124 18 1 8.2895 0.0880 0.1419 19 6 3.4333 1.2849 0.0059 20 8 4.1786 0.1505 0.0112 21 6 4.4556 -0.4496 -1.2557 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 -0.8901 25 1 0.2131 2.3142 -0.0014 26 1 1.3095 4.5148 -0.0009 27 1 5.0115 4.9494 0.0611 28 1 2.4870 5.9352 -1.3433 29 1 4.0450 6.7943 -1.2843 30 1 3.9171 5.2417 -2.1447 31 1 3.9171 6.8544 1.2106 32 1 2.3591 5.9952 1.1512 33 1 3.6981 5.3445 2.1269 34 1 6.1938 0.5520 2.3547 35 1 5.0018 0.2567 -1.8808 36 1 5.0575 -1.3465 -1.1090 37 1 3.5183 -0.7173 -1.7437 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000216048692.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:58:44 Heat of formation + Delta-G solvation = -80.083813 kcal Electronic energy + Delta-G solvation = -19284.847577 eV Core-core repulsion = 16412.946211 eV Total energy + Delta-G solvation = -2871.901366 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.87841 -38.84043 -38.09404 -35.21141 -34.79401 -31.38142 -29.96296 -27.91649 -27.79675 -27.56327 -26.41523 -23.54866 -22.51227 -20.48257 -19.44761 -18.22649 -17.26863 -17.04547 -16.65077 -16.43520 -15.74350 -15.51293 -15.25691 -14.80198 -14.71979 -14.11390 -13.89721 -13.59223 -13.29068 -13.11195 -12.91608 -12.85962 -12.62887 -12.54011 -12.35901 -11.98065 -11.96202 -11.81850 -11.41356 -11.25324 -11.03734 -10.75126 -10.17857 -9.03040 -8.57102 -8.42205 -6.22479 0.95365 1.04500 1.40706 1.47705 1.52738 2.28325 2.68717 2.88753 3.36921 3.72983 4.24918 4.30927 4.40260 4.44870 4.52544 4.58667 4.61401 4.61898 4.70923 4.79068 4.80260 4.94669 4.96457 5.11120 5.14114 5.16024 5.26863 5.29713 5.49207 5.61825 5.64420 5.88502 5.97167 6.08323 6.24435 6.52164 6.78093 6.94868 7.06861 7.52078 8.54135 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.015320 B = 0.012141 C = 0.007591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1827.193627 B = 2305.618249 C = 3687.584900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.344 6.344 3 C 0.100 3.900 4 C -0.303 4.303 5 C -0.068 4.068 6 C -0.189 4.189 7 C -0.043 4.043 8 C -0.129 4.129 9 C -0.129 4.129 10 C 0.107 3.893 11 C -0.496 4.496 12 H 0.078 0.922 13 C 0.060 3.940 14 N -0.798 5.798 15 Si 0.952 3.048 16 H -0.257 1.257 17 H -0.270 1.270 18 H -0.271 1.271 19 C -0.029 4.029 20 O -0.311 6.311 21 C 0.037 3.963 22 H 0.052 0.948 23 H 0.114 0.886 24 H 0.058 0.942 25 H 0.128 0.872 26 H 0.124 0.876 27 H 0.061 0.939 28 H 0.057 0.943 29 H 0.067 0.933 30 H 0.037 0.963 31 H 0.067 0.933 32 H 0.058 0.942 33 H 0.029 0.971 34 H 0.280 0.720 35 H 0.028 0.972 36 H 0.086 0.914 37 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.755 2.839 -3.881 6.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.259 6.259 3 C 0.055 3.945 4 C -0.322 4.322 5 C -0.086 4.086 6 C -0.190 4.190 7 C -0.061 4.061 8 C -0.186 4.186 9 C -0.186 4.186 10 C 0.105 3.895 11 C -0.525 4.525 12 H 0.096 0.904 13 C -0.158 4.158 14 N -0.422 5.422 15 Si 0.775 3.225 16 H -0.180 1.180 17 H -0.195 1.195 18 H -0.196 1.196 19 C -0.075 4.075 20 O -0.227 6.227 21 C -0.058 4.058 22 H 0.070 0.930 23 H 0.132 0.868 24 H 0.076 0.924 25 H 0.146 0.854 26 H 0.142 0.858 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.086 0.914 30 H 0.056 0.944 31 H 0.086 0.914 32 H 0.077 0.923 33 H 0.049 0.951 34 H 0.090 0.910 35 H 0.047 0.953 36 H 0.104 0.896 37 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -4.570 2.404 -3.522 6.251 hybrid contribution 0.495 -0.424 -0.123 0.663 sum -4.076 1.980 -3.646 5.816 Atomic orbital electron populations 1.23137 0.77924 1.04401 1.01396 1.86041 1.22444 1.27845 1.89536 1.19569 0.91638 0.84630 0.98663 1.20706 0.98825 0.91710 1.20993 1.20286 0.93955 0.96210 0.98113 1.19812 0.93200 0.94684 1.11320 1.19837 0.99508 0.91098 0.95659 1.21749 1.01373 0.99350 0.96125 1.21739 1.01031 0.99023 0.96794 1.17856 0.94223 0.89563 0.87884 1.19287 0.91124 1.17393 1.24693 0.90422 1.26303 1.03628 0.92919 0.92949 1.69821 1.39591 1.20783 1.12041 0.85619 0.78572 0.78922 0.79432 1.18017 1.19511 1.19618 1.18400 0.85503 0.87179 1.16404 1.86110 1.71207 1.38430 1.26956 1.22779 0.98821 0.97108 0.87114 0.92962 0.86800 0.92377 0.85430 0.85790 0.92095 0.92348 0.91440 0.94380 0.91400 0.92291 0.95135 0.90995 0.95345 0.89561 0.95145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.80 9.81 113.37 1.11 1.91 16 2 O -0.34 -15.22 10.28 -79.73 -0.82 -16.04 16 3 C 0.10 4.87 6.69 22.53 0.15 5.02 16 4 C -0.30 -13.01 9.05 22.51 0.20 -12.80 16 5 C -0.07 -2.84 8.64 21.99 0.19 -2.65 16 6 C -0.19 -8.73 4.82 -19.65 -0.09 -8.83 16 7 C -0.04 -1.66 2.94 -11.54 -0.03 -1.70 16 8 C -0.13 -4.10 9.03 71.98 0.65 -3.45 16 9 C -0.13 -4.34 8.97 71.98 0.65 -3.69 16 10 C 0.11 5.74 5.33 -21.21 -0.11 5.63 16 11 C -0.50 -26.46 7.63 23.40 0.18 -26.29 16 12 H 0.08 4.02 7.03 -2.91 -0.02 4.00 16 13 C 0.06 3.12 4.44 85.25 0.38 3.50 16 14 N -0.80 -44.37 11.36 21.82 0.25 -44.12 16 15 Si 0.95 39.89 29.60 68.60 2.03 41.92 16 16 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 17 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 18 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 19 C -0.03 -1.59 5.22 23.15 0.12 -1.47 16 20 O -0.31 -16.81 7.27 -76.67 -0.56 -17.37 16 21 C 0.04 1.65 11.13 113.37 1.26 2.91 16 22 H 0.05 1.52 7.66 -2.39 -0.02 1.50 16 23 H 0.11 2.73 8.14 -2.38 -0.02 2.71 16 24 H 0.06 1.60 7.66 -2.38 -0.02 1.58 16 25 H 0.13 4.60 6.27 -2.90 -0.02 4.58 16 26 H 0.12 4.35 7.02 -2.91 -0.02 4.33 16 27 H 0.06 2.64 6.01 -2.39 -0.01 2.63 16 28 H 0.06 1.69 7.55 -2.39 -0.02 1.68 16 29 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.06 1.79 7.19 -2.39 -0.02 1.78 16 33 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.28 14.45 8.30 -92.71 -0.77 13.68 16 35 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.09 3.36 8.14 -2.38 -0.02 3.34 16 37 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -64.11 303.36 6.60 -57.51 By element: Atomic # 1 Polarization: 18.95 SS G_CDS: 1.05 Total: 20.00 kcal Atomic # 6 Polarization: -46.55 SS G_CDS: 4.65 Total: -41.90 kcal Atomic # 7 Polarization: -44.37 SS G_CDS: 0.25 Total: -44.12 kcal Atomic # 8 Polarization: -32.04 SS G_CDS: -1.38 Total: -33.41 kcal Atomic # 14 Polarization: 39.89 SS G_CDS: 2.03 Total: 41.92 kcal Total: -64.11 6.60 -57.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216048692.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.572 kcal (2) G-P(sol) polarization free energy of solvation -64.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds