Wall clock time and date at job start Mon Mar 30 2020 06:01:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47253 * 2 1 4 4 C 1.50697 * 109.47152 * 180.02562 * 3 2 1 5 5 C 1.38284 * 119.73278 * 265.00011 * 4 3 2 6 6 C 1.38366 * 120.22930 * 180.02562 * 5 4 3 7 7 O 1.35691 * 120.14908 * 180.02562 * 6 5 4 8 8 C 1.42900 * 117.00232 * 359.97438 * 7 6 5 9 9 C 1.41348 * 119.69772 * 0.27719 * 6 5 4 10 10 C 1.41139 * 120.25844 * 179.72775 * 9 6 5 11 11 H 1.08001 * 120.00078 * 24.57094 * 10 9 6 12 12 C 1.39919 * 119.99637 * 204.57079 * 10 9 6 13 13 N 1.30872 * 120.00055 * 17.61029 * 12 10 9 14 14 Si 1.86803 * 119.99759 * 197.60455 * 12 10 9 15 15 H 1.48507 * 109.47069 * 60.00437 * 14 12 10 16 16 H 1.48503 * 109.46857 * 179.97438 * 14 12 10 17 17 H 1.48496 * 109.47323 * 300.00136 * 14 12 10 18 18 C 1.40656 * 119.47912 * 359.47213 * 9 6 5 19 19 C 1.37942 * 119.76385 * 0.52831 * 18 9 6 20 20 O 1.35951 * 119.85459 * 179.74846 * 19 18 9 21 21 C 1.42903 * 116.99892 * 359.97438 * 20 19 18 22 22 H 1.08999 * 109.47191 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.46597 * 299.99640 * 1 2 3 24 24 H 1.08997 * 109.47206 * 59.99251 * 1 2 3 25 25 H 1.09000 * 109.46597 * 240.00360 * 2 1 3 26 26 H 1.08997 * 109.46895 * 120.00299 * 2 1 3 27 27 H 1.08997 * 109.47024 * 60.00096 * 3 2 1 28 28 H 1.09001 * 109.46764 * 300.00287 * 3 2 1 29 29 H 1.08000 * 119.87974 * 0.02562 * 5 4 3 30 30 H 1.08999 * 109.47413 * 180.02562 * 8 7 6 31 31 H 1.09001 * 109.46891 * 60.00356 * 8 7 6 32 32 H 1.08994 * 109.47501 * 300.00454 * 8 7 6 33 33 H 0.97004 * 119.99936 * 179.97438 * 13 12 10 34 34 H 1.08006 * 120.12340 * 180.27243 * 18 9 6 35 35 H 1.09006 * 109.46686 * 180.02562 * 21 20 19 36 36 H 1.09003 * 109.47048 * 299.99931 * 21 20 19 37 37 H 1.08994 * 109.47031 * 60.00205 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 6 4.2334 1.5469 1.1953 6 6 5.6170 1.5485 1.2066 7 8 6.2888 1.6506 2.3811 8 6 5.5038 1.7539 3.5707 9 6 6.3274 1.4486 -0.0113 10 6 7.7387 1.4549 -0.0140 11 1 8.2818 1.1415 0.8653 12 6 8.4343 1.8671 -1.1560 13 7 7.8210 2.5608 -2.0808 14 14 10.2382 1.4273 -1.3603 15 1 10.3906 -0.0500 -1.3612 16 1 10.7391 1.9768 -2.6458 17 1 11.0189 2.0047 -0.2368 18 6 5.6167 1.3376 -1.2200 19 6 4.2373 1.3383 -1.2059 20 8 3.5486 1.2362 -2.3736 21 6 4.3177 1.1325 -3.5735 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3632 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 1.6768 1.9563 0.8900 28 1 1.6767 1.9563 -0.8900 29 1 3.6875 1.6276 2.1237 30 1 6.1629 1.8295 4.4356 31 1 4.8749 0.8690 3.6690 32 1 4.8748 2.6423 3.5150 33 1 8.3033 2.8469 -2.8723 34 1 6.1490 1.2563 -2.1563 35 1 3.6470 1.0580 -4.4296 36 1 4.9456 2.0171 -3.6802 37 1 4.9469 0.2438 -3.5261 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000216048764.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:46 Heat of formation + Delta-G solvation = -76.007246 kcal Electronic energy + Delta-G solvation = -18695.957938 eV Core-core repulsion = 15824.233346 eV Total energy + Delta-G solvation = -2871.724593 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.09768 -37.73328 -35.49543 -34.68357 -32.95394 -30.16702 -28.12774 -27.11951 -26.65495 -26.08304 -23.63913 -21.28698 -20.50192 -19.89958 -17.72380 -16.34335 -16.02786 -15.50060 -14.83242 -14.67966 -14.49718 -14.23652 -13.82911 -13.44464 -13.07619 -12.72924 -12.38557 -12.10659 -11.69404 -11.58514 -11.37555 -11.17547 -11.03030 -10.90852 -10.71639 -10.59708 -10.50595 -10.35150 -10.13875 -9.97070 -9.32011 -9.24068 -8.92603 -7.42264 -6.83449 -6.41862 -4.26598 2.72756 3.00723 3.06996 3.10826 3.21020 3.94462 4.39330 4.56024 4.60643 5.45352 5.50541 5.63165 5.66539 5.80870 5.86849 5.87608 5.98539 6.01939 6.03432 6.19906 6.21057 6.25328 6.35094 6.41212 6.53905 6.64074 6.86688 6.90227 7.02766 7.10326 7.32642 7.49569 7.67663 7.88013 8.13171 8.30198 8.61786 8.69375 8.83732 9.11494 10.18462 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.020559 B = 0.007935 C = 0.005969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.596844 B = 3527.824248 C = 4689.474697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.116 4.116 3 C -0.044 4.044 4 C -0.205 4.205 5 C -0.145 4.145 6 C -0.009 4.009 7 O -0.313 6.313 8 C 0.035 3.965 9 C 0.123 3.877 10 C -0.442 4.442 11 H 0.083 0.917 12 C 0.074 3.926 13 N -0.795 5.795 14 Si 0.909 3.091 15 H -0.264 1.264 16 H -0.279 1.279 17 H -0.265 1.265 18 C -0.233 4.233 19 C 0.118 3.882 20 O -0.331 6.331 21 C 0.037 3.963 22 H 0.045 0.955 23 H 0.047 0.953 24 H 0.050 0.950 25 H 0.060 0.940 26 H 0.053 0.947 27 H 0.046 0.954 28 H 0.057 0.943 29 H 0.101 0.899 30 H 0.080 0.920 31 H 0.038 0.962 32 H 0.039 0.961 33 H 0.280 0.720 34 H 0.135 0.865 35 H 0.078 0.922 36 H 0.055 0.945 37 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.818 -2.338 1.184 6.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.153 4.153 3 C -0.082 4.082 4 C -0.207 4.207 5 C -0.164 4.164 6 C -0.053 4.053 7 O -0.227 6.227 8 C -0.061 4.061 9 C 0.120 3.880 10 C -0.472 4.472 11 H 0.101 0.899 12 C -0.143 4.143 13 N -0.421 5.421 14 Si 0.734 3.266 15 H -0.188 1.188 16 H -0.204 1.204 17 H -0.189 1.189 18 C -0.254 4.254 19 C 0.074 3.926 20 O -0.245 6.245 21 C -0.059 4.059 22 H 0.064 0.936 23 H 0.066 0.934 24 H 0.069 0.931 25 H 0.079 0.921 26 H 0.072 0.928 27 H 0.065 0.935 28 H 0.075 0.925 29 H 0.119 0.881 30 H 0.099 0.901 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.091 0.909 34 H 0.152 0.848 35 H 0.097 0.903 36 H 0.073 0.927 37 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -5.766 -2.206 0.956 6.247 hybrid contribution 0.857 -0.055 -0.129 0.868 sum -4.909 -2.261 0.827 5.467 Atomic orbital electron populations 1.21796 0.97089 1.00614 1.01172 1.21509 0.94014 0.98089 1.01725 1.20037 0.92524 0.95323 1.00293 1.18131 0.93607 1.18915 0.90006 1.20274 0.92476 1.07305 0.96324 1.19157 0.89733 1.10789 0.85575 1.85958 1.34340 1.90000 1.12449 1.22711 0.96312 0.99768 0.87293 1.16787 0.93275 0.90372 0.87523 1.19418 0.91169 1.37647 0.98944 0.89854 1.25915 1.00897 0.92508 0.94982 1.69847 1.38719 1.25318 1.08228 0.86347 0.81966 0.80059 0.78255 1.18839 1.20405 1.18916 1.21165 0.90680 1.13870 0.99639 1.18594 0.90654 0.99326 0.84027 1.85884 1.35806 1.89455 1.13384 1.22764 0.96315 1.01375 0.85444 0.93558 0.93353 0.93090 0.92095 0.92797 0.93477 0.92467 0.88080 0.90148 0.94316 0.94236 0.90944 0.84802 0.90329 0.92677 0.93753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.91 37.16 0.37 -1.64 16 2 C -0.12 -1.93 5.92 -26.73 -0.16 -2.09 16 3 C -0.04 -0.83 5.05 -27.88 -0.14 -0.98 16 4 C -0.20 -4.65 5.17 -104.22 -0.54 -5.18 16 5 C -0.14 -3.31 8.64 -39.52 -0.34 -3.65 16 6 C -0.01 -0.22 6.72 -38.35 -0.26 -0.48 16 7 O -0.31 -7.35 9.78 -18.78 -0.18 -7.54 16 8 C 0.04 0.61 9.81 101.05 0.99 1.61 16 9 C 0.12 3.36 5.58 -106.70 -0.60 2.77 16 10 C -0.44 -12.01 8.72 -37.85 -0.33 -12.34 16 11 H 0.08 2.25 7.64 -52.49 -0.40 1.84 16 12 C 0.07 1.87 5.14 -17.33 -0.09 1.78 16 13 N -0.80 -20.39 10.96 55.55 0.61 -19.78 16 14 Si 0.91 18.85 29.59 -169.99 -5.03 13.82 16 15 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 16 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 17 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 18 C -0.23 -6.07 7.66 -38.78 -0.30 -6.37 16 19 C 0.12 2.84 6.65 -39.30 -0.26 2.58 16 20 O -0.33 -7.18 9.60 -19.59 -0.19 -7.37 16 21 C 0.04 0.67 9.81 101.05 0.99 1.66 16 22 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 26 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.05 0.82 8.05 -51.93 -0.42 0.40 16 28 H 0.06 1.09 7.67 -51.93 -0.40 0.69 16 29 H 0.10 2.03 6.28 -52.49 -0.33 1.70 16 30 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.04 0.62 7.66 -51.93 -0.40 0.22 16 32 H 0.04 0.65 7.66 -51.93 -0.40 0.25 16 33 H 0.28 6.52 8.30 -40.82 -0.34 6.18 16 34 H 0.13 3.49 4.38 -52.48 -0.23 3.26 16 35 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.05 1.06 7.65 -51.93 -0.40 0.66 16 37 H 0.04 0.80 7.65 -51.93 -0.40 0.41 16 LS Contribution 305.96 15.07 4.61 4.61 Total: -1.00 -28.78 305.96 -6.30 -35.08 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -5.46 Total: 3.48 kcal Atomic # 6 Polarization: -21.66 SS G_CDS: -0.66 Total: -22.32 kcal Atomic # 7 Polarization: -20.39 SS G_CDS: 0.61 Total: -19.78 kcal Atomic # 8 Polarization: -14.54 SS G_CDS: -0.37 Total: -14.91 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.03 Total: 13.82 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -28.78 -6.30 -35.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216048764.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.923 kcal (2) G-P(sol) polarization free energy of solvation -28.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds