Wall clock time and date at job start Mon Mar 30 2020 06:01:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47253 * 2 1 4 4 C 1.50697 * 109.47152 * 180.02562 * 3 2 1 5 5 C 1.38284 * 119.73278 * 265.00011 * 4 3 2 6 6 C 1.38366 * 120.22930 * 180.02562 * 5 4 3 7 7 O 1.35691 * 120.14908 * 180.02562 * 6 5 4 8 8 C 1.42900 * 117.00232 * 359.97438 * 7 6 5 9 9 C 1.41348 * 119.69772 * 0.27719 * 6 5 4 10 10 C 1.41139 * 120.25844 * 179.72775 * 9 6 5 11 11 H 1.08001 * 120.00078 * 24.57094 * 10 9 6 12 12 C 1.39919 * 119.99637 * 204.57079 * 10 9 6 13 13 N 1.30872 * 120.00055 * 17.61029 * 12 10 9 14 14 Si 1.86803 * 119.99759 * 197.60455 * 12 10 9 15 15 H 1.48507 * 109.47069 * 60.00437 * 14 12 10 16 16 H 1.48503 * 109.46857 * 179.97438 * 14 12 10 17 17 H 1.48496 * 109.47323 * 300.00136 * 14 12 10 18 18 C 1.40656 * 119.47912 * 359.47213 * 9 6 5 19 19 C 1.37942 * 119.76385 * 0.52831 * 18 9 6 20 20 O 1.35951 * 119.85459 * 179.74846 * 19 18 9 21 21 C 1.42903 * 116.99892 * 359.97438 * 20 19 18 22 22 H 1.08999 * 109.47191 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.46597 * 299.99640 * 1 2 3 24 24 H 1.08997 * 109.47206 * 59.99251 * 1 2 3 25 25 H 1.09000 * 109.46597 * 240.00360 * 2 1 3 26 26 H 1.08997 * 109.46895 * 120.00299 * 2 1 3 27 27 H 1.08997 * 109.47024 * 60.00096 * 3 2 1 28 28 H 1.09001 * 109.46764 * 300.00287 * 3 2 1 29 29 H 1.08000 * 119.87974 * 0.02562 * 5 4 3 30 30 H 1.08999 * 109.47413 * 180.02562 * 8 7 6 31 31 H 1.09001 * 109.46891 * 60.00356 * 8 7 6 32 32 H 1.08994 * 109.47501 * 300.00454 * 8 7 6 33 33 H 0.97004 * 119.99936 * 179.97438 * 13 12 10 34 34 H 1.08006 * 120.12340 * 180.27243 * 18 9 6 35 35 H 1.09006 * 109.46686 * 180.02562 * 21 20 19 36 36 H 1.09003 * 109.47048 * 299.99931 * 21 20 19 37 37 H 1.08994 * 109.47031 * 60.00205 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 6 4.2334 1.5469 1.1953 6 6 5.6170 1.5485 1.2066 7 8 6.2888 1.6506 2.3811 8 6 5.5038 1.7539 3.5707 9 6 6.3274 1.4486 -0.0113 10 6 7.7387 1.4549 -0.0140 11 1 8.2818 1.1415 0.8653 12 6 8.4343 1.8671 -1.1560 13 7 7.8210 2.5608 -2.0808 14 14 10.2382 1.4273 -1.3603 15 1 10.3906 -0.0500 -1.3612 16 1 10.7391 1.9768 -2.6458 17 1 11.0189 2.0047 -0.2368 18 6 5.6167 1.3376 -1.2200 19 6 4.2373 1.3383 -1.2059 20 8 3.5486 1.2362 -2.3736 21 6 4.3177 1.1325 -3.5735 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3632 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 1.6768 1.9563 0.8900 28 1 1.6767 1.9563 -0.8900 29 1 3.6875 1.6276 2.1237 30 1 6.1629 1.8295 4.4356 31 1 4.8749 0.8690 3.6690 32 1 4.8748 2.6423 3.5150 33 1 8.3033 2.8469 -2.8723 34 1 6.1490 1.2563 -2.1563 35 1 3.6470 1.0580 -4.4296 36 1 4.9456 2.0171 -3.6802 37 1 4.9469 0.2438 -3.5261 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000216048764.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:45 Heat of formation + Delta-G solvation = -92.177956 kcal Electronic energy + Delta-G solvation = -18696.659153 eV Core-core repulsion = 15824.233346 eV Total energy + Delta-G solvation = -2872.425807 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.87569 -39.44917 -37.17943 -36.37592 -34.61704 -31.87133 -29.90980 -28.74668 -28.22498 -27.62912 -25.31326 -22.83179 -22.24821 -21.54663 -19.59150 -18.05505 -17.86013 -17.23547 -16.54820 -16.36028 -16.09538 -15.56655 -15.39904 -15.15239 -14.57248 -14.23764 -13.91411 -13.75203 -13.43899 -13.13970 -12.94207 -12.78601 -12.48338 -12.41300 -12.22497 -12.14394 -12.02950 -11.96329 -11.93259 -11.37883 -11.12516 -10.99773 -10.70138 -9.31456 -8.70782 -8.26659 -6.23491 0.89850 1.12034 1.37062 1.47867 1.52275 2.21514 2.69345 2.74967 2.98397 3.62764 4.19789 4.22234 4.36792 4.43283 4.46626 4.49425 4.51819 4.52372 4.68899 4.74354 4.78134 4.81806 4.98019 5.02581 5.12407 5.16785 5.20993 5.25185 5.36182 5.47602 5.58489 5.76062 5.80453 6.00254 6.25778 6.37440 6.75940 6.83364 6.91022 7.28276 8.33888 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.020559 B = 0.007935 C = 0.005969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.596844 B = 3527.824248 C = 4689.474697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.111 4.111 3 C -0.041 4.041 4 C -0.203 4.203 5 C -0.145 4.145 6 C -0.024 4.024 7 O -0.340 6.340 8 C 0.027 3.973 9 C 0.083 3.917 10 C -0.481 4.481 11 H 0.070 0.930 12 C 0.036 3.964 13 N -0.824 5.824 14 Si 0.980 3.020 15 H -0.261 1.261 16 H -0.264 1.264 17 H -0.263 1.263 18 C -0.249 4.249 19 C 0.104 3.896 20 O -0.332 6.332 21 C 0.035 3.965 22 H 0.061 0.939 23 H 0.061 0.939 24 H 0.054 0.946 25 H 0.043 0.957 26 H 0.052 0.948 27 H 0.066 0.934 28 H 0.054 0.946 29 H 0.132 0.868 30 H 0.110 0.890 31 H 0.052 0.948 32 H 0.049 0.951 33 H 0.288 0.712 34 H 0.125 0.875 35 H 0.123 0.877 36 H 0.039 0.961 37 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.096 -2.623 1.581 7.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.149 4.149 3 C -0.079 4.079 4 C -0.205 4.205 5 C -0.164 4.164 6 C -0.068 4.068 7 O -0.256 6.256 8 C -0.068 4.068 9 C 0.080 3.920 10 C -0.510 4.510 11 H 0.089 0.911 12 C -0.179 4.179 13 N -0.451 5.451 14 Si 0.801 3.199 15 H -0.186 1.186 16 H -0.188 1.188 17 H -0.187 1.187 18 C -0.269 4.269 19 C 0.060 3.940 20 O -0.247 6.247 21 C -0.060 4.060 22 H 0.080 0.920 23 H 0.080 0.920 24 H 0.073 0.927 25 H 0.061 0.939 26 H 0.071 0.929 27 H 0.085 0.915 28 H 0.073 0.927 29 H 0.150 0.850 30 H 0.129 0.871 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.098 0.902 34 H 0.143 0.857 35 H 0.141 0.859 36 H 0.058 0.942 37 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -7.068 -2.489 1.358 7.616 hybrid contribution 1.118 0.049 -0.201 1.137 sum -5.950 -2.441 1.157 6.535 Atomic orbital electron populations 1.21730 0.94182 1.01995 1.02057 1.21429 0.96511 0.96139 1.00817 1.20095 0.89610 0.97076 1.01104 1.18721 0.95987 1.16347 0.89449 1.20605 0.91789 1.06309 0.97722 1.19344 0.90694 1.10886 0.85922 1.85901 1.36252 1.90012 1.13412 1.23065 0.97162 1.00783 0.85832 1.17218 0.94025 0.91749 0.89007 1.19523 0.91703 1.40075 0.99748 0.91149 1.26702 1.05279 0.91752 0.94133 1.69886 1.40582 1.25803 1.08783 0.85286 0.76247 0.79699 0.78663 1.18587 1.18800 1.18711 1.21190 0.91720 1.14864 0.99165 1.18807 0.90243 0.99425 0.85564 1.85871 1.36070 1.89216 1.13553 1.22968 0.97158 1.00432 0.85431 0.91996 0.91974 0.92713 0.93860 0.92940 0.91517 0.92716 0.85035 0.87133 0.92938 0.93259 0.90173 0.85744 0.85905 0.94228 0.94145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.35 9.91 71.98 0.71 -2.63 16 2 C -0.11 -3.47 5.92 30.60 0.18 -3.29 16 3 C -0.04 -1.47 5.05 29.85 0.15 -1.32 16 4 C -0.20 -9.10 5.17 -19.60 -0.10 -9.20 16 5 C -0.15 -6.54 8.64 22.31 0.19 -6.35 16 6 C -0.02 -1.25 6.72 23.07 0.16 -1.09 16 7 O -0.34 -16.16 9.78 -90.10 -0.88 -17.05 16 8 C 0.03 0.88 9.81 113.37 1.11 1.99 16 9 C 0.08 4.69 5.58 -21.21 -0.12 4.57 16 10 C -0.48 -27.31 8.72 23.39 0.20 -27.10 16 11 H 0.07 4.00 7.64 -2.91 -0.02 3.98 16 12 C 0.04 1.85 5.14 85.24 0.44 2.29 16 13 N -0.82 -43.57 10.96 21.82 0.24 -43.33 16 14 Si 0.98 39.43 29.59 68.60 2.03 41.46 16 15 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 16 H -0.26 -9.84 7.11 99.48 0.71 -9.14 16 17 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 18 C -0.25 -13.46 7.66 22.79 0.17 -13.28 16 19 C 0.10 5.07 6.65 22.45 0.15 5.22 16 20 O -0.33 -14.37 9.60 -93.00 -0.89 -15.26 16 21 C 0.04 1.28 9.81 113.37 1.11 2.39 16 22 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 23 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 24 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.07 2.11 8.05 -2.39 -0.02 2.09 16 28 H 0.05 1.97 7.67 -2.39 -0.02 1.96 16 29 H 0.13 4.97 6.28 -2.91 -0.02 4.95 16 30 H 0.11 2.93 8.14 -2.39 -0.02 2.91 16 31 H 0.05 1.58 7.66 -2.39 -0.02 1.56 16 32 H 0.05 1.52 7.66 -2.39 -0.02 1.50 16 33 H 0.29 13.69 8.30 -92.71 -0.77 12.92 16 34 H 0.12 6.80 4.38 -2.91 -0.01 6.79 16 35 H 0.12 3.31 8.14 -2.38 -0.02 3.29 16 36 H 0.04 1.55 7.65 -2.39 -0.02 1.53 16 37 H 0.04 1.48 7.65 -2.39 -0.02 1.46 16 Total: -1.00 -64.53 305.96 5.91 -58.62 By element: Atomic # 1 Polarization: 22.32 SS G_CDS: 1.05 Total: 23.37 kcal Atomic # 6 Polarization: -52.17 SS G_CDS: 4.36 Total: -47.81 kcal Atomic # 7 Polarization: -43.57 SS G_CDS: 0.24 Total: -43.33 kcal Atomic # 8 Polarization: -30.54 SS G_CDS: -1.77 Total: -32.31 kcal Atomic # 14 Polarization: 39.43 SS G_CDS: 2.03 Total: 41.46 kcal Total: -64.53 5.91 -58.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216048764.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.561 kcal (2) G-P(sol) polarization free energy of solvation -64.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds