Wall clock time and date at job start Mon Mar 30 2020 06:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35660 * 116.99855 * 2 1 4 4 C 1.38160 * 120.22444 * 359.97438 * 3 2 1 5 5 C 1.38962 * 119.99663 * 180.02562 * 4 3 2 6 6 O 1.35692 * 119.77329 * 180.02562 * 5 4 3 7 7 C 1.42900 * 116.99707 * 0.02562 * 6 5 4 8 8 C 1.39480 * 120.45616 * 0.02562 * 5 4 3 9 9 C 1.50695 * 119.77223 * 179.97438 * 8 5 4 10 10 C 1.53003 * 109.47073 * 120.00119 * 9 8 5 11 11 C 1.52998 * 109.47587 * 240.00346 * 9 8 5 12 12 C 1.36318 * 120.45815 * 359.69185 * 8 5 4 13 13 C 1.40814 * 119.98158 * 0.56244 * 12 8 5 14 14 C 1.41025 * 120.21737 * 179.73686 * 13 12 8 15 15 H 1.08007 * 119.99798 * 155.01013 * 14 13 12 16 16 C 1.39869 * 120.00437 * 334.73873 * 14 13 12 17 17 N 1.30927 * 119.99753 * 342.74726 * 16 14 13 18 18 Si 1.86797 * 120.00024 * 162.74841 * 16 14 13 19 19 H 1.48498 * 109.47284 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47089 * 119.99875 * 18 16 14 21 21 H 1.48505 * 109.47377 * 239.99853 * 18 16 14 22 22 H 1.09005 * 109.46960 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47409 * 300.00160 * 1 2 3 24 24 H 1.08997 * 109.47028 * 60.00200 * 1 2 3 25 25 H 1.07994 * 119.99911 * 0.02562 * 4 3 2 26 26 H 1.08998 * 109.47267 * 180.02562 * 7 6 5 27 27 H 1.09007 * 109.47261 * 299.99797 * 7 6 5 28 28 H 1.09002 * 109.47539 * 59.99817 * 7 6 5 29 29 H 1.09004 * 109.47030 * 0.02562 * 9 8 5 30 30 H 1.09004 * 109.46932 * 60.00259 * 10 9 8 31 31 H 1.08996 * 109.47745 * 180.02562 * 10 9 8 32 32 H 1.09001 * 109.47165 * 300.00824 * 10 9 8 33 33 H 1.09004 * 109.47011 * 300.00104 * 11 9 8 34 34 H 1.09000 * 109.47371 * 59.99972 * 11 9 8 35 35 H 1.09004 * 109.47118 * 180.02562 * 11 9 8 36 36 H 1.07993 * 120.00634 * 180.30021 * 12 8 5 37 37 H 0.97002 * 119.99786 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 6 1.2969 2.3704 -0.0005 5 6 1.9327 3.6060 -0.0011 6 8 1.1936 4.7440 -0.0011 7 6 -0.2275 4.5946 0.0001 8 6 3.3253 3.6846 -0.0016 9 6 3.9987 5.0328 -0.0028 10 6 4.8723 5.1675 1.2461 11 6 4.8713 5.1660 -1.2524 12 6 4.0814 2.5504 0.0047 13 6 3.4569 1.2883 -0.0001 14 6 4.2343 0.1117 0.0007 15 1 3.8230 -0.8069 0.3925 16 6 5.5358 0.1330 -0.5109 17 7 5.9190 1.1172 -1.2847 18 14 6.7274 -1.2428 -0.0904 19 1 6.0545 -2.2270 0.7950 20 1 7.1650 -1.9174 -1.3387 21 1 7.9100 -0.6774 0.6075 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 0.2183 2.3180 -0.0005 26 1 -0.6963 5.5786 -0.0005 27 1 -0.5358 4.0452 -0.8895 28 1 -0.5345 4.0460 0.8905 29 1 3.2416 5.8170 -0.0026 30 1 5.6293 4.3833 1.2463 31 1 5.3590 6.1428 1.2456 32 1 4.2506 5.0726 2.1364 33 1 5.6283 4.3817 -1.2522 34 1 4.2490 5.0700 -2.1421 35 1 5.3587 6.1410 -1.2529 36 1 5.1591 2.6197 0.0091 37 1 6.8218 1.1321 -1.6393 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000216048832.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:54 Heat of formation + Delta-G solvation = -69.647796 kcal Electronic energy + Delta-G solvation = -18971.839764 eV Core-core repulsion = 16100.390938 eV Total energy + Delta-G solvation = -2871.448826 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.29633 -37.67123 -36.27764 -34.27104 -32.74689 -29.33721 -28.24082 -27.13290 -26.38794 -26.29191 -24.40541 -21.82759 -20.79150 -18.88641 -17.63511 -17.01160 -15.86267 -15.13167 -14.96039 -14.69993 -14.54427 -13.92940 -13.77273 -13.42750 -13.01653 -12.60732 -12.43933 -12.15956 -11.70116 -11.47974 -11.30839 -11.18745 -11.04319 -10.95362 -10.73391 -10.54077 -10.43298 -10.38825 -10.06337 -9.59823 -9.35456 -9.35095 -8.88006 -7.31250 -6.82444 -6.57034 -4.08858 2.77949 2.89012 3.14794 3.20244 3.22831 4.03653 4.30386 4.47426 4.64261 5.53298 5.59237 5.65526 5.66260 5.72720 5.75740 5.78432 5.85058 5.94539 6.04717 6.09547 6.28448 6.41792 6.52192 6.58182 6.60405 6.71331 6.87261 6.99632 7.05724 7.21127 7.37254 7.60371 7.68871 7.85972 8.18293 8.42510 8.48100 8.75307 8.93226 9.12058 10.31339 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.017268 B = 0.009758 C = 0.006629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.114118 B = 2868.763464 C = 4222.557815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.309 6.309 3 C 0.036 3.964 4 C -0.252 4.252 5 C 0.029 3.971 6 O -0.326 6.326 7 C 0.038 3.962 8 C -0.104 4.104 9 C -0.041 4.041 10 C -0.137 4.137 11 C -0.137 4.137 12 C -0.106 4.106 13 C 0.075 3.925 14 C -0.446 4.446 15 H 0.080 0.920 16 C 0.073 3.927 17 N -0.802 5.802 18 Si 0.905 3.095 19 H -0.262 1.262 20 H -0.277 1.277 21 H -0.274 1.274 22 H 0.082 0.918 23 H 0.038 0.962 24 H 0.039 0.961 25 H 0.104 0.896 26 H 0.082 0.918 27 H 0.040 0.960 28 H 0.040 0.960 29 H 0.068 0.932 30 H 0.056 0.944 31 H 0.042 0.958 32 H 0.048 0.952 33 H 0.064 0.936 34 H 0.048 0.952 35 H 0.039 0.961 36 H 0.135 0.865 37 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.889 3.960 1.758 6.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.223 6.223 3 C -0.008 4.008 4 C -0.272 4.272 5 C -0.015 4.015 6 O -0.241 6.241 7 C -0.058 4.058 8 C -0.105 4.105 9 C -0.059 4.059 10 C -0.195 4.195 11 C -0.194 4.194 12 C -0.125 4.125 13 C 0.073 3.927 14 C -0.476 4.476 15 H 0.098 0.902 16 C -0.143 4.143 17 N -0.429 5.429 18 Si 0.730 3.270 19 H -0.185 1.185 20 H -0.202 1.202 21 H -0.199 1.199 22 H 0.101 0.899 23 H 0.056 0.944 24 H 0.057 0.943 25 H 0.122 0.878 26 H 0.100 0.900 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.086 0.914 30 H 0.075 0.925 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.083 0.917 34 H 0.067 0.933 35 H 0.058 0.942 36 H 0.152 0.848 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.528 4.029 1.617 6.273 hybrid contribution -0.121 -0.706 0.017 0.717 sum -4.649 3.323 1.635 5.944 Atomic orbital electron populations 1.22725 0.81890 1.01758 0.99748 1.85987 1.18091 1.28138 1.90067 1.18994 0.92235 0.82150 1.07446 1.20677 0.97773 0.92473 1.16236 1.18127 0.90101 0.83374 1.09899 1.85846 1.16802 1.30495 1.90978 1.22692 0.81336 1.01630 1.00115 1.18558 0.89234 0.95046 1.07693 1.19771 0.96427 0.95202 0.94539 1.21813 0.99570 1.00349 0.97742 1.21804 0.99802 1.00322 0.97498 1.20605 0.99669 0.89273 1.02995 1.17025 0.87089 0.94198 0.94429 1.19313 0.96700 0.96513 1.35116 0.90211 1.25820 0.98804 0.96807 0.92859 1.69857 1.18965 1.30882 1.23186 0.86307 0.80081 0.81459 0.79141 1.18539 1.20210 1.19885 0.89941 0.94373 0.94291 0.87830 0.89995 0.94121 0.94133 0.91388 0.92504 0.93866 0.93289 0.91708 0.93306 0.94208 0.84767 0.91188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.60 9.81 101.05 0.99 1.59 16 2 O -0.31 -7.24 9.78 -18.68 -0.18 -7.42 16 3 C 0.04 0.92 6.72 -38.40 -0.26 0.66 16 4 C -0.25 -5.75 8.01 -39.34 -0.31 -6.07 16 5 C 0.03 0.66 6.68 -38.85 -0.26 0.40 16 6 O -0.33 -6.65 9.22 -18.78 -0.17 -6.82 16 7 C 0.04 0.59 9.80 101.05 0.99 1.59 16 8 C -0.10 -2.44 4.78 -104.85 -0.50 -2.94 16 9 C -0.04 -0.81 3.05 -91.77 -0.28 -1.09 16 10 C -0.14 -2.45 9.00 37.16 0.33 -2.12 16 11 C -0.14 -2.57 9.00 37.16 0.33 -2.24 16 12 C -0.11 -2.69 7.26 -39.30 -0.29 -2.98 16 13 C 0.08 2.03 5.58 -106.66 -0.60 1.44 16 14 C -0.45 -12.13 8.71 -37.92 -0.33 -12.46 16 15 H 0.08 2.18 7.65 -52.48 -0.40 1.78 16 16 C 0.07 1.85 5.14 -17.33 -0.09 1.76 16 17 N -0.80 -20.61 10.97 55.54 0.61 -20.00 16 18 Si 0.91 19.15 29.59 -169.99 -5.03 14.12 16 19 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 20 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 21 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 22 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 23 H 0.04 0.61 7.66 -51.93 -0.40 0.21 16 24 H 0.04 0.63 7.66 -51.93 -0.40 0.24 16 25 H 0.10 2.06 4.50 -52.49 -0.24 1.82 16 26 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 27 H 0.04 0.61 7.64 -51.93 -0.40 0.21 16 28 H 0.04 0.60 7.65 -51.93 -0.40 0.20 16 29 H 0.07 1.34 6.97 -51.93 -0.36 0.98 16 30 H 0.06 1.06 7.33 -51.93 -0.38 0.67 16 31 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.06 1.31 7.37 -51.93 -0.38 0.92 16 34 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 35 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.13 3.49 5.13 -52.49 -0.27 3.22 16 37 H 0.28 6.51 8.30 -40.82 -0.34 6.17 16 LS Contribution 301.12 15.07 4.54 4.54 Total: -1.00 -28.88 301.12 -5.79 -34.67 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: -5.29 Total: 3.38 kcal Atomic # 6 Polarization: -22.21 SS G_CDS: -0.26 Total: -22.47 kcal Atomic # 7 Polarization: -20.61 SS G_CDS: 0.61 Total: -20.00 kcal Atomic # 8 Polarization: -13.88 SS G_CDS: -0.36 Total: -14.24 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -5.03 Total: 14.12 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -28.88 -5.79 -34.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216048832.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.975 kcal (2) G-P(sol) polarization free energy of solvation -28.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds