Wall clock time and date at job start Mon Mar 30 2020 06:04:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35660 * 116.99855 * 2 1 4 4 C 1.38160 * 120.22444 * 359.97438 * 3 2 1 5 5 C 1.38962 * 119.99663 * 180.02562 * 4 3 2 6 6 O 1.35692 * 119.77329 * 180.02562 * 5 4 3 7 7 C 1.42900 * 116.99707 * 0.02562 * 6 5 4 8 8 C 1.39480 * 120.45616 * 0.02562 * 5 4 3 9 9 C 1.50695 * 119.77223 * 179.97438 * 8 5 4 10 10 C 1.53003 * 109.47073 * 120.00119 * 9 8 5 11 11 C 1.52998 * 109.47587 * 240.00346 * 9 8 5 12 12 C 1.36318 * 120.45815 * 359.69185 * 8 5 4 13 13 C 1.40814 * 119.98158 * 0.56244 * 12 8 5 14 14 C 1.41025 * 120.21737 * 179.73686 * 13 12 8 15 15 H 1.08007 * 119.99798 * 155.01013 * 14 13 12 16 16 C 1.39869 * 120.00437 * 334.73873 * 14 13 12 17 17 N 1.30927 * 119.99753 * 342.74726 * 16 14 13 18 18 Si 1.86797 * 120.00024 * 162.74841 * 16 14 13 19 19 H 1.48498 * 109.47284 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47089 * 119.99875 * 18 16 14 21 21 H 1.48505 * 109.47377 * 239.99853 * 18 16 14 22 22 H 1.09005 * 109.46960 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47409 * 300.00160 * 1 2 3 24 24 H 1.08997 * 109.47028 * 60.00200 * 1 2 3 25 25 H 1.07994 * 119.99911 * 0.02562 * 4 3 2 26 26 H 1.08998 * 109.47267 * 180.02562 * 7 6 5 27 27 H 1.09007 * 109.47261 * 299.99797 * 7 6 5 28 28 H 1.09002 * 109.47539 * 59.99817 * 7 6 5 29 29 H 1.09004 * 109.47030 * 0.02562 * 9 8 5 30 30 H 1.09004 * 109.46932 * 60.00259 * 10 9 8 31 31 H 1.08996 * 109.47745 * 180.02562 * 10 9 8 32 32 H 1.09001 * 109.47165 * 300.00824 * 10 9 8 33 33 H 1.09004 * 109.47011 * 300.00104 * 11 9 8 34 34 H 1.09000 * 109.47371 * 59.99972 * 11 9 8 35 35 H 1.09004 * 109.47118 * 180.02562 * 11 9 8 36 36 H 1.07993 * 120.00634 * 180.30021 * 12 8 5 37 37 H 0.97002 * 119.99786 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 6 1.2969 2.3704 -0.0005 5 6 1.9327 3.6060 -0.0011 6 8 1.1936 4.7440 -0.0011 7 6 -0.2275 4.5946 0.0001 8 6 3.3253 3.6846 -0.0016 9 6 3.9987 5.0328 -0.0028 10 6 4.8723 5.1675 1.2461 11 6 4.8713 5.1660 -1.2524 12 6 4.0814 2.5504 0.0047 13 6 3.4569 1.2883 -0.0001 14 6 4.2343 0.1117 0.0007 15 1 3.8230 -0.8069 0.3925 16 6 5.5358 0.1330 -0.5109 17 7 5.9190 1.1172 -1.2847 18 14 6.7274 -1.2428 -0.0904 19 1 6.0545 -2.2270 0.7950 20 1 7.1650 -1.9174 -1.3387 21 1 7.9100 -0.6774 0.6075 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 0.2183 2.3180 -0.0005 26 1 -0.6963 5.5786 -0.0005 27 1 -0.5358 4.0452 -0.8895 28 1 -0.5345 4.0460 0.8905 29 1 3.2416 5.8170 -0.0026 30 1 5.6293 4.3833 1.2463 31 1 5.3590 6.1428 1.2456 32 1 4.2506 5.0726 2.1364 33 1 5.6283 4.3817 -1.2522 34 1 4.2490 5.0700 -2.1421 35 1 5.3587 6.1410 -1.2529 36 1 5.1591 2.6197 0.0091 37 1 6.8218 1.1321 -1.6393 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000216048832.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:53 Heat of formation + Delta-G solvation = -86.139880 kcal Electronic energy + Delta-G solvation = -18972.554915 eV Core-core repulsion = 16100.390938 eV Total energy + Delta-G solvation = -2872.163977 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.02692 -39.33714 -37.94724 -36.01599 -34.53100 -31.15079 -29.94410 -28.56192 -27.89721 -27.85757 -26.14422 -23.51478 -22.59056 -20.56734 -19.36155 -18.84503 -17.53025 -16.89642 -16.50898 -16.37367 -16.06289 -15.62135 -15.32669 -15.00925 -14.65046 -14.15611 -14.08722 -13.75787 -13.39063 -13.03894 -12.84403 -12.79317 -12.68616 -12.45681 -12.31339 -12.15010 -12.12964 -11.90795 -11.71666 -11.28203 -11.12535 -11.08184 -10.67483 -9.14851 -8.69198 -8.41917 -6.05516 0.96735 1.02851 1.40611 1.50281 1.55019 2.27740 2.73702 2.80613 2.89090 3.66199 4.04825 4.19761 4.34659 4.39306 4.42848 4.43556 4.45444 4.52422 4.68930 4.73026 4.80552 4.85094 4.90119 5.01017 5.08083 5.10622 5.21956 5.26802 5.44944 5.50906 5.54967 5.77874 5.86796 6.03231 6.29449 6.52645 6.77640 6.85725 7.00972 7.28295 8.45875 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.017268 B = 0.009758 C = 0.006629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.114118 B = 2868.763464 C = 4222.557815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.337 6.337 3 C 0.023 3.977 4 C -0.255 4.255 5 C 0.035 3.965 6 O -0.334 6.334 7 C 0.027 3.973 8 C -0.120 4.120 9 C -0.040 4.040 10 C -0.131 4.131 11 C -0.130 4.130 12 C -0.113 4.113 13 C 0.032 3.968 14 C -0.484 4.484 15 H 0.063 0.937 16 C 0.035 3.965 17 N -0.829 5.829 18 Si 0.974 3.026 19 H -0.266 1.266 20 H -0.268 1.268 21 H -0.262 1.262 22 H 0.113 0.887 23 H 0.052 0.948 24 H 0.048 0.952 25 H 0.134 0.866 26 H 0.119 0.881 27 H 0.046 0.954 28 H 0.049 0.951 29 H 0.075 0.925 30 H 0.040 0.960 31 H 0.074 0.926 32 H 0.046 0.954 33 H 0.043 0.957 34 H 0.037 0.963 35 H 0.073 0.927 36 H 0.121 0.879 37 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.773 5.074 2.001 7.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.252 6.252 3 C -0.022 4.022 4 C -0.275 4.275 5 C -0.010 4.010 6 O -0.250 6.250 7 C -0.068 4.068 8 C -0.121 4.121 9 C -0.058 4.058 10 C -0.189 4.189 11 C -0.187 4.187 12 C -0.133 4.133 13 C 0.030 3.970 14 C -0.515 4.515 15 H 0.081 0.919 16 C -0.178 4.178 17 N -0.457 5.457 18 Si 0.796 3.204 19 H -0.190 1.190 20 H -0.193 1.193 21 H -0.187 1.187 22 H 0.131 0.869 23 H 0.070 0.930 24 H 0.067 0.933 25 H 0.151 0.849 26 H 0.137 0.863 27 H 0.064 0.936 28 H 0.067 0.933 29 H 0.093 0.907 30 H 0.060 0.940 31 H 0.093 0.907 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.056 0.944 35 H 0.092 0.908 36 H 0.139 0.861 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -5.444 5.159 1.859 7.727 hybrid contribution -0.084 -0.946 -0.067 0.952 sum -5.528 4.213 1.792 7.178 Atomic orbital electron populations 1.23084 0.78741 1.04285 1.00777 1.85934 1.21434 1.27749 1.90036 1.19176 0.92193 0.83502 1.07279 1.20940 0.99243 0.91699 1.15571 1.18333 0.90494 0.84316 1.07828 1.85835 1.19341 1.29222 1.90560 1.23077 0.78594 1.04362 1.00741 1.18944 0.89995 0.96107 1.07039 1.19830 0.96844 0.93285 0.95875 1.21750 0.98916 1.01596 0.96597 1.21725 0.99005 1.01429 0.96533 1.20513 0.99248 0.89762 1.03770 1.17441 0.88612 0.94854 0.96087 1.19371 0.98401 0.96265 1.37434 0.91861 1.26544 0.99723 0.99308 0.92207 1.69898 1.19677 1.32419 1.23697 0.85280 0.77822 0.78336 0.78978 1.18961 1.19310 1.18675 0.86879 0.92988 0.93329 0.84878 0.86262 0.93576 0.93270 0.90689 0.94043 0.90660 0.93495 0.93826 0.94387 0.90836 0.86133 0.90480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.86 9.81 113.37 1.11 1.97 16 2 O -0.34 -15.98 9.78 -89.76 -0.88 -16.86 16 3 C 0.02 1.20 6.72 23.04 0.15 1.36 16 4 C -0.26 -11.46 8.01 22.42 0.18 -11.28 16 5 C 0.03 1.57 6.68 22.74 0.15 1.72 16 6 O -0.33 -12.86 9.22 -90.11 -0.83 -13.69 16 7 C 0.03 0.75 9.80 113.37 1.11 1.86 16 8 C -0.12 -5.64 4.78 -20.01 -0.10 -5.74 16 9 C -0.04 -1.55 3.05 -11.54 -0.04 -1.59 16 10 C -0.13 -4.54 9.00 71.98 0.65 -3.89 16 11 C -0.13 -4.77 9.00 71.98 0.65 -4.12 16 12 C -0.11 -5.98 7.26 22.45 0.16 -5.81 16 13 C 0.03 1.82 5.58 -21.18 -0.12 1.70 16 14 C -0.48 -27.62 8.71 23.35 0.20 -27.42 16 15 H 0.06 3.66 7.65 -2.91 -0.02 3.64 16 16 C 0.04 1.84 5.14 85.22 0.44 2.28 16 17 N -0.83 -44.07 10.97 21.82 0.24 -43.83 16 18 Si 0.97 40.29 29.59 68.60 2.03 42.32 16 19 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 20 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 21 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 22 H 0.11 2.96 8.14 -2.38 -0.02 2.94 16 23 H 0.05 1.55 7.66 -2.39 -0.02 1.53 16 24 H 0.05 1.49 7.66 -2.39 -0.02 1.47 16 25 H 0.13 5.00 4.50 -2.91 -0.01 4.99 16 26 H 0.12 2.42 8.14 -2.39 -0.02 2.40 16 27 H 0.05 1.23 7.64 -2.38 -0.02 1.22 16 28 H 0.05 1.29 7.65 -2.39 -0.02 1.27 16 29 H 0.07 2.80 6.97 -2.38 -0.02 2.78 16 30 H 0.04 1.54 7.33 -2.38 -0.02 1.52 16 31 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.04 1.77 7.37 -2.38 -0.02 1.75 16 34 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 36 H 0.12 6.58 5.13 -2.91 -0.01 6.56 16 37 H 0.28 13.69 8.30 -92.71 -0.77 12.92 16 Total: -1.00 -64.75 301.12 6.18 -58.57 By element: Atomic # 1 Polarization: 21.38 SS G_CDS: 1.06 Total: 22.44 kcal Atomic # 6 Polarization: -53.52 SS G_CDS: 4.56 Total: -48.96 kcal Atomic # 7 Polarization: -44.07 SS G_CDS: 0.24 Total: -43.83 kcal Atomic # 8 Polarization: -28.83 SS G_CDS: -1.71 Total: -30.54 kcal Atomic # 14 Polarization: 40.29 SS G_CDS: 2.03 Total: 42.32 kcal Total: -64.75 6.18 -58.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216048832.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.569 kcal (2) G-P(sol) polarization free energy of solvation -64.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds