Wall clock time and date at job start Mon Mar 30 2020 06:57:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42909 * 113.99795 * 2 1 4 4 C 1.53000 * 109.47145 * 205.76509 * 3 2 1 5 5 C 1.50697 * 109.47032 * 174.99998 * 4 3 2 6 6 C 1.38231 * 120.00285 * 90.00205 * 5 4 3 7 7 C 1.38234 * 120.00588 * 179.97438 * 6 5 4 8 8 C 1.38234 * 119.99450 * 0.02562 * 7 6 5 9 9 C 1.50703 * 119.99785 * 179.97438 * 8 7 6 10 10 C 1.50693 * 109.47092 * 90.00101 * 9 8 7 11 11 H 1.07996 * 120.00096 * 359.97438 * 10 9 8 12 12 C 1.37881 * 119.99905 * 180.27426 * 10 9 8 13 13 N 1.31513 * 120.00037 * 359.72714 * 12 10 9 14 14 Si 1.86804 * 119.99956 * 179.72367 * 12 10 9 15 15 H 1.48501 * 109.46985 * 0.02562 * 14 12 10 16 16 H 1.48496 * 109.46956 * 120.00367 * 14 12 10 17 17 H 1.48504 * 109.47242 * 240.00412 * 14 12 10 18 18 C 1.38237 * 120.00322 * 0.25475 * 8 7 6 19 19 C 1.38234 * 119.99584 * 359.49180 * 18 8 7 20 20 O 1.42903 * 109.47129 * 85.76604 * 3 2 1 21 21 C 1.42895 * 113.99708 * 286.10377 * 20 3 2 22 22 H 1.08999 * 109.47538 * 306.53804 * 1 2 3 23 23 H 1.09004 * 109.47023 * 66.53611 * 1 2 3 24 24 H 1.09000 * 109.47127 * 186.53027 * 1 2 3 25 25 H 1.09000 * 109.46934 * 325.76353 * 3 2 1 26 26 H 1.09004 * 109.46716 * 55.00082 * 4 3 2 27 27 H 1.08999 * 109.47261 * 295.00153 * 4 3 2 28 28 H 1.08004 * 119.99514 * 359.97438 * 6 5 4 29 29 H 1.07999 * 119.99887 * 179.97438 * 7 6 5 30 30 H 1.09004 * 109.47128 * 330.00232 * 9 8 7 31 31 H 1.08999 * 109.47104 * 210.00148 * 9 8 7 32 32 H 0.97004 * 120.00095 * 179.97438 * 13 12 10 33 33 H 1.08000 * 120.00172 * 179.72904 * 18 8 7 34 34 H 1.08007 * 119.99796 * 180.24822 * 19 18 8 35 35 H 1.09004 * 109.47623 * 76.32491 * 21 20 3 36 36 H 1.09008 * 109.47192 * 196.31985 * 21 20 3 37 37 H 1.09000 * 109.47609 * 316.31692 * 21 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.4044 1.2431 -0.6270 5 6 3.9675 2.6364 -0.7393 6 6 4.7108 3.1673 0.2982 7 6 5.2278 4.4451 0.1951 8 6 5.0010 5.1924 -0.9456 9 6 5.5642 6.5857 -1.0579 10 6 6.9373 6.5242 -1.6755 11 1 7.3602 5.5715 -1.9581 12 6 7.6564 7.6838 -1.8742 13 7 7.1417 8.8439 -1.5296 14 14 9.3618 7.6069 -2.6328 15 1 9.7082 6.1937 -2.9296 16 1 9.3798 8.3953 -3.8910 17 1 10.3527 8.1706 -1.6811 18 6 4.2529 4.6637 -1.9808 19 6 3.7403 3.3839 -1.8797 20 8 2.1131 1.7812 1.3436 21 6 0.8652 2.1750 1.9178 22 1 -0.3634 0.6118 0.8257 23 1 -0.3633 0.4092 -0.9427 24 1 -0.3633 -1.0210 0.1169 25 1 1.3818 1.9830 -0.5782 26 1 3.3368 0.7975 -1.6195 27 1 4.0580 0.6365 -0.0001 28 1 4.8876 2.5835 1.1896 29 1 5.8082 4.8599 1.0060 30 1 5.6318 7.0314 -0.0654 31 1 4.9106 7.1923 -1.6848 32 1 7.6477 9.6597 -1.6691 33 1 4.0720 5.2492 -2.8702 34 1 3.1591 2.9694 -2.6902 35 1 0.2972 1.2875 2.1966 36 1 1.0487 2.7822 2.8044 37 1 0.2979 2.7560 1.1907 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000216050377.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:42 Heat of formation + Delta-G solvation = -100.861600 kcal Electronic energy + Delta-G solvation = -17850.629690 eV Core-core repulsion = 14977.827332 eV Total energy + Delta-G solvation = -2872.802358 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.64197 -39.72349 -36.94107 -35.78100 -34.17793 -31.67809 -31.40653 -28.92014 -27.23647 -26.91973 -25.03432 -23.45661 -23.23931 -21.34987 -18.53227 -18.35712 -18.23999 -17.12742 -16.75041 -16.11616 -16.04559 -15.70656 -15.34812 -14.99040 -14.53921 -14.52522 -14.15924 -13.96534 -13.59142 -13.46888 -13.21242 -13.00215 -12.74151 -12.53141 -12.38229 -12.21580 -12.10643 -11.67716 -11.48548 -11.33347 -10.95866 -10.76972 -10.61984 -9.68025 -9.25870 -8.21007 -6.34645 0.58062 0.64917 1.39243 1.39577 1.53543 2.38888 2.55745 2.88810 3.08134 3.09394 3.76290 4.03617 4.06911 4.18530 4.28455 4.31141 4.40154 4.41767 4.46645 4.51984 4.55412 4.74641 4.78521 4.87915 4.90108 4.95261 5.15566 5.25072 5.36791 5.43031 5.64989 5.74930 5.77530 6.07244 6.11316 6.11991 6.14929 6.30797 6.78273 7.34053 8.88403 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.047727 B = 0.004049 C = 0.003951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.524052 B = 6913.064074 C = 7084.397601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 O -0.413 6.413 3 C 0.249 3.751 4 C -0.053 4.053 5 C -0.105 4.105 6 C -0.094 4.094 7 C -0.140 4.140 8 C -0.064 4.064 9 C 0.055 3.945 10 C -0.528 4.528 11 H 0.054 0.946 12 C 0.003 3.997 13 N -0.931 5.931 14 Si 0.967 3.033 15 H -0.265 1.265 16 H -0.275 1.275 17 H -0.276 1.276 18 C -0.138 4.138 19 C -0.108 4.108 20 O -0.407 6.407 21 C 0.018 3.982 22 H 0.055 0.945 23 H 0.055 0.945 24 H 0.101 0.899 25 H 0.065 0.935 26 H 0.110 0.890 27 H 0.085 0.915 28 H 0.131 0.869 29 H 0.109 0.891 30 H 0.001 0.999 31 H 0.003 0.997 32 H 0.266 0.734 33 H 0.114 0.886 34 H 0.147 0.853 35 H 0.059 0.941 36 H 0.090 0.910 37 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.835 -16.740 2.661 21.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 O -0.334 6.334 3 C 0.154 3.846 4 C -0.090 4.090 5 C -0.105 4.105 6 C -0.112 4.112 7 C -0.158 4.158 8 C -0.064 4.064 9 C 0.018 3.982 10 C -0.566 4.566 11 H 0.072 0.928 12 C -0.195 4.195 13 N -0.571 5.571 14 Si 0.792 3.208 15 H -0.190 1.190 16 H -0.200 1.200 17 H -0.201 1.201 18 C -0.156 4.156 19 C -0.126 4.126 20 O -0.328 6.328 21 C -0.078 4.078 22 H 0.074 0.926 23 H 0.074 0.926 24 H 0.120 0.880 25 H 0.082 0.918 26 H 0.128 0.872 27 H 0.104 0.896 28 H 0.149 0.851 29 H 0.127 0.873 30 H 0.019 0.981 31 H 0.022 0.978 32 H 0.075 0.925 33 H 0.133 0.867 34 H 0.165 0.835 35 H 0.077 0.923 36 H 0.108 0.892 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -13.528 -16.717 2.759 21.681 hybrid contribution 0.463 0.958 -0.242 1.091 sum -13.065 -15.758 2.517 20.624 Atomic orbital electron populations 1.23289 0.79523 1.04504 1.01385 1.87978 1.21629 1.29750 1.94001 1.23393 0.95247 0.82635 0.83322 1.20342 0.93032 0.93178 1.02493 1.19598 1.00187 0.96193 0.94498 1.21080 0.96982 0.94385 0.98722 1.21072 1.01389 0.95463 0.97869 1.20415 0.94686 0.97096 0.94207 1.18115 0.95030 0.89323 0.95707 1.21406 1.01336 0.93082 1.40781 0.92806 1.25953 1.02616 0.94893 0.96022 1.70089 1.39616 0.98503 1.48848 0.85363 0.78784 0.78506 0.78197 1.18959 1.20007 1.20134 1.21092 0.99415 0.96721 0.98387 1.21200 0.99926 0.93298 0.98129 1.88051 1.31959 1.82556 1.30263 1.23114 0.85822 0.99688 0.99178 0.92628 0.92645 0.88011 0.91752 0.87156 0.89620 0.85097 0.87332 0.98105 0.97826 0.92540 0.86747 0.83543 0.92309 0.89188 0.93084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 10.68 113.37 1.21 1.33 16 2 O -0.41 -8.88 10.56 -126.21 -1.33 -10.22 16 3 C 0.25 5.63 2.82 71.98 0.20 5.83 16 4 C -0.05 -1.25 5.43 29.85 0.16 -1.08 16 5 C -0.10 -3.12 4.97 -19.87 -0.10 -3.22 16 6 C -0.09 -3.17 9.40 22.27 0.21 -2.96 16 7 C -0.14 -5.74 9.70 22.27 0.22 -5.52 16 8 C -0.06 -2.92 5.07 -19.86 -0.10 -3.02 16 9 C 0.06 3.04 5.10 29.10 0.15 3.19 16 10 C -0.53 -30.90 9.09 25.60 0.23 -30.66 16 11 H 0.05 3.11 7.74 -2.91 -0.02 3.09 16 12 C 0.00 0.18 5.46 84.66 0.46 0.65 16 13 N -0.93 -56.81 13.29 21.45 0.28 -56.53 16 14 Si 0.97 44.90 29.54 68.60 2.03 46.93 16 15 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 16 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 17 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 18 C -0.14 -5.43 9.70 22.27 0.22 -5.21 16 19 C -0.11 -3.34 9.70 22.27 0.22 -3.12 16 20 O -0.41 -10.34 10.10 -126.21 -1.27 -11.61 16 21 C 0.02 0.32 9.76 113.37 1.11 1.43 16 22 H 0.06 0.69 4.80 -2.39 -0.01 0.68 16 23 H 0.05 0.65 8.14 -2.38 -0.02 0.63 16 24 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 25 H 0.07 1.34 7.56 -2.39 -0.02 1.32 16 26 H 0.11 2.12 8.09 -2.39 -0.02 2.11 16 27 H 0.09 2.02 8.09 -2.39 -0.02 2.00 16 28 H 0.13 3.93 8.06 -2.91 -0.02 3.91 16 29 H 0.11 4.49 8.06 -2.91 -0.02 4.47 16 30 H 0.00 0.04 8.09 -2.39 -0.02 0.02 16 31 H 0.00 0.20 8.08 -2.39 -0.02 0.18 16 32 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 33 H 0.11 4.43 8.06 -2.91 -0.02 4.41 16 34 H 0.15 3.43 8.06 -2.91 -0.02 3.41 16 35 H 0.06 0.89 6.27 -2.38 -0.01 0.88 16 36 H 0.09 1.53 8.14 -2.38 -0.02 1.51 16 37 H 0.05 0.83 7.80 -2.39 -0.02 0.81 16 Total: -1.00 -68.40 313.17 4.92 -63.48 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: 1.04 Total: 10.33 kcal Atomic # 6 Polarization: -46.56 SS G_CDS: 4.18 Total: -42.37 kcal Atomic # 7 Polarization: -56.81 SS G_CDS: 0.28 Total: -56.53 kcal Atomic # 8 Polarization: -19.22 SS G_CDS: -2.61 Total: -21.83 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -68.40 4.92 -63.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216050377.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.383 kcal (2) G-P(sol) polarization free energy of solvation -68.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds