Wall clock time and date at job start Mon Mar 30 2020 05:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35986 * 117.00551 * 2 1 4 4 C 1.38566 * 120.07402 * 95.23401 * 3 2 1 5 5 C 1.50693 * 119.99879 * 0.04850 * 4 3 2 6 6 C 1.38242 * 120.00029 * 180.02562 * 4 3 2 7 7 C 1.38261 * 120.14607 * 359.74829 * 6 4 3 8 8 C 1.38242 * 120.14458 * 0.50524 * 7 6 4 9 9 C 1.50700 * 119.99937 * 179.77197 * 8 7 6 10 10 H 1.09004 * 109.47227 * 179.72978 * 9 8 7 11 11 C 1.53006 * 109.46787 * 299.72613 * 9 8 7 12 12 C 1.50695 * 109.47277 * 59.72240 * 9 8 7 13 13 H 1.07996 * 120.00140 * 354.36764 * 12 9 8 14 14 C 1.37879 * 119.99985 * 174.35952 * 12 9 8 15 15 N 1.31507 * 119.99810 * 156.98950 * 14 12 9 16 16 Si 1.86797 * 120.00027 * 336.98800 * 14 12 9 17 17 H 1.48497 * 109.47131 * 180.02562 * 16 14 12 18 18 H 1.48503 * 109.47253 * 60.00128 * 16 14 12 19 19 H 1.48503 * 109.47409 * 300.00274 * 16 14 12 20 20 C 1.38566 * 119.99770 * 359.49675 * 8 7 6 21 21 O 1.36001 * 120.06928 * 180.22856 * 20 8 7 22 22 C 1.42901 * 116.99951 * 95.05193 * 21 20 8 23 23 H 1.08994 * 109.46896 * 305.04499 * 1 2 3 24 24 H 1.09000 * 109.46831 * 65.04389 * 1 2 3 25 25 H 1.09000 * 109.47338 * 185.04058 * 1 2 3 26 26 H 1.08999 * 109.47169 * 89.99814 * 5 4 3 27 27 H 1.09003 * 109.46946 * 209.99630 * 5 4 3 28 28 H 1.09004 * 109.47404 * 329.99678 * 5 4 3 29 29 H 1.07996 * 119.92701 * 179.97438 * 6 4 3 30 30 H 1.07993 * 119.92535 * 180.25901 * 7 6 4 31 31 H 1.09005 * 109.46657 * 173.29235 * 11 9 8 32 32 H 1.09007 * 109.46938 * 293.28198 * 11 9 8 33 33 H 1.08995 * 109.47143 * 53.28480 * 11 9 8 34 34 H 0.97001 * 120.00623 * 354.92794 * 15 14 12 35 35 H 1.09000 * 109.47209 * 184.98761 * 22 21 20 36 36 H 1.08995 * 109.47099 * 304.98897 * 22 21 20 37 37 H 1.09005 * 109.46887 * 64.98734 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2116 0.0000 4 6 2.4593 1.7806 1.1941 5 6 2.2250 1.0562 2.4946 6 6 3.0864 3.0126 1.1924 7 6 3.3079 3.6773 0.0005 8 6 2.8939 3.1176 -1.1939 9 6 3.1325 3.8473 -2.4907 10 1 2.7450 3.2534 -3.3185 11 6 2.4168 5.1992 -2.4542 12 6 4.6114 4.0669 -2.6788 13 1 5.3018 3.7958 -1.8938 14 6 5.0832 4.6138 -3.8533 15 7 6.2507 5.2187 -3.8745 16 14 4.0641 4.4954 -5.4143 17 1 4.7885 5.1560 -6.5297 18 1 2.7573 5.1689 -5.2046 19 1 3.8364 3.0668 -5.7498 20 6 2.2647 1.8830 -1.1991 21 8 1.8610 1.3290 -2.3737 22 6 2.7544 0.4026 -2.9949 23 1 -0.3633 0.5901 0.8413 24 1 -0.3633 0.4336 -0.9317 25 1 -0.3634 -1.0237 0.0903 26 1 3.0806 0.4175 2.7139 27 1 2.0985 1.7825 3.2974 28 1 1.3264 0.4445 2.4131 29 1 3.4072 3.4551 2.1238 30 1 3.8018 4.6376 0.0029 31 1 2.6853 5.7764 -3.3390 32 1 1.3386 5.0392 -2.4382 33 1 2.7165 5.7449 -1.5595 34 1 6.7466 5.3451 -3.0505 35 1 2.3528 0.1042 -3.9633 36 1 3.7272 0.8740 -3.1347 37 1 2.8646 -0.4770 -2.3606 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000221804296.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:44 Heat of formation + Delta-G solvation = -62.526249 kcal Electronic energy + Delta-G solvation = -19076.014222 eV Core-core repulsion = 16204.874209 eV Total energy + Delta-G solvation = -2871.140013 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.14343 -37.56175 -36.82075 -34.47820 -32.09214 -30.28438 -29.47047 -27.28058 -26.13213 -25.74039 -24.61476 -22.01282 -21.53694 -19.58019 -17.59082 -16.92196 -16.48468 -16.27330 -15.54316 -14.75996 -14.37263 -14.22457 -13.76263 -13.38827 -13.28956 -13.07485 -12.63118 -12.33303 -12.09396 -12.00336 -11.73700 -11.45768 -11.29393 -11.16845 -10.69914 -10.56675 -10.40301 -10.11988 -9.84748 -9.75017 -9.06860 -8.98021 -8.21802 -8.05816 -7.83798 -6.45721 -4.06858 1.55809 1.77473 3.41323 3.45153 3.62779 3.72560 4.10905 4.50422 4.54528 5.15505 5.20513 5.28258 5.38656 5.45980 5.59959 5.67848 5.74815 5.78149 5.82516 5.82998 5.90102 6.02425 6.08705 6.17127 6.32541 6.48263 6.64029 6.74264 6.80345 6.88891 6.99278 7.16169 7.29065 7.52572 7.64629 8.09154 8.17236 8.37095 8.89130 9.57475 10.89357 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.027263 B = 0.007761 C = 0.006723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.798194 B = 3607.056004 C = 4163.598257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.333 6.333 3 C 0.067 3.933 4 C -0.120 4.120 5 C -0.099 4.099 6 C -0.118 4.118 7 C -0.099 4.099 8 C -0.033 4.033 9 C 0.047 3.953 10 H 0.038 0.962 11 C -0.138 4.138 12 C -0.600 4.600 13 H 0.058 0.942 14 C 0.040 3.960 15 N -0.898 5.898 16 Si 1.034 2.966 17 H -0.286 1.286 18 H -0.276 1.276 19 H -0.283 1.283 20 C 0.067 3.933 21 O -0.331 6.331 22 C 0.039 3.961 23 H 0.040 0.960 24 H 0.049 0.951 25 H 0.086 0.914 26 H 0.066 0.934 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.121 0.879 30 H 0.130 0.870 31 H 0.053 0.947 32 H 0.023 0.977 33 H 0.043 0.957 34 H 0.269 0.731 35 H 0.085 0.915 36 H 0.056 0.944 37 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.083 -7.699 8.241 15.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.250 6.250 3 C 0.024 3.976 4 C -0.120 4.120 5 C -0.156 4.156 6 C -0.136 4.136 7 C -0.117 4.117 8 C -0.033 4.033 9 C 0.028 3.972 10 H 0.056 0.944 11 C -0.196 4.196 12 C -0.637 4.637 13 H 0.077 0.923 14 C -0.166 4.166 15 N -0.531 5.531 16 Si 0.862 3.138 17 H -0.212 1.212 18 H -0.202 1.202 19 H -0.209 1.209 20 C 0.023 3.977 21 O -0.248 6.248 22 C -0.056 4.056 23 H 0.059 0.941 24 H 0.068 0.932 25 H 0.105 0.895 26 H 0.084 0.916 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.139 0.861 30 H 0.148 0.852 31 H 0.072 0.928 32 H 0.042 0.958 33 H 0.063 0.937 34 H 0.079 0.921 35 H 0.104 0.896 36 H 0.075 0.925 37 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -10.137 -7.496 6.519 14.193 hybrid contribution 0.145 -0.301 1.690 1.723 sum -9.992 -7.797 8.209 15.100 Atomic orbital electron populations 1.22906 0.79700 1.02215 1.00768 1.85956 1.19435 1.25216 1.94373 1.18818 1.00290 0.86704 0.91828 1.19841 1.02485 0.95488 0.94199 1.20557 1.01919 0.99544 0.93580 1.20911 1.00047 0.94372 0.98246 1.21027 0.99047 1.00650 0.90991 1.20568 0.91643 0.93447 0.97688 1.18106 0.97617 0.91715 0.89734 0.94421 1.22141 0.96964 0.99114 1.01338 1.21887 0.90099 1.46915 1.04773 0.92346 1.25669 0.97396 0.92006 1.01528 1.70850 1.15071 1.35486 1.31695 0.84184 0.76004 0.77125 0.76534 1.21186 1.20183 1.20914 1.18957 1.00844 0.93131 0.84804 1.85903 1.43980 1.60326 1.34607 1.22945 0.94545 0.91306 0.96786 0.94098 0.93212 0.89542 0.91560 0.92036 0.91998 0.86146 0.85237 0.92823 0.95781 0.93748 0.92101 0.89635 0.92539 0.93950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.50 10.84 101.05 1.10 1.59 16 2 O -0.33 -5.55 9.31 -34.20 -0.32 -5.87 16 3 C 0.07 1.24 5.71 -39.12 -0.22 1.01 16 4 C -0.12 -1.98 5.89 -104.50 -0.62 -2.60 16 5 C -0.10 -1.27 9.79 36.00 0.35 -0.92 16 6 C -0.12 -1.98 9.70 -39.57 -0.38 -2.36 16 7 C -0.10 -1.96 8.56 -39.57 -0.34 -2.30 16 8 C -0.03 -0.72 4.76 -104.50 -0.50 -1.22 16 9 C 0.05 1.14 2.04 -92.92 -0.19 0.95 16 10 H 0.04 0.94 5.54 -51.93 -0.29 0.65 16 11 C -0.14 -3.09 8.83 37.16 0.33 -2.76 16 12 C -0.60 -16.52 8.48 -34.44 -0.29 -16.82 16 13 H 0.06 1.74 7.77 -52.49 -0.41 1.33 16 14 C 0.04 1.14 5.20 -17.82 -0.09 1.04 16 15 N -0.90 -27.06 13.69 55.43 0.76 -26.30 16 16 Si 1.03 25.12 26.44 -169.99 -4.49 20.62 16 17 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 18 H -0.28 -6.29 6.14 56.52 0.35 -5.94 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 20 C 0.07 1.38 5.71 -39.12 -0.22 1.15 16 21 O -0.33 -6.74 8.97 -34.24 -0.31 -7.05 16 22 C 0.04 0.68 11.11 101.05 1.12 1.81 16 23 H 0.04 0.48 7.87 -51.93 -0.41 0.07 16 24 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 25 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 26 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.06 0.66 8.09 -51.93 -0.42 0.24 16 28 H 0.06 0.75 6.99 -51.93 -0.36 0.39 16 29 H 0.12 1.66 8.06 -52.49 -0.42 1.24 16 30 H 0.13 2.57 7.55 -52.49 -0.40 2.18 16 31 H 0.05 1.24 5.46 -51.93 -0.28 0.96 16 32 H 0.02 0.48 8.14 -51.92 -0.42 0.06 16 33 H 0.04 0.94 7.19 -51.93 -0.37 0.57 16 34 H 0.27 8.06 8.73 -40.82 -0.36 7.71 16 35 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 37 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 305.60 15.07 4.61 4.61 Total: -1.00 -30.58 305.60 -5.24 -35.82 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: -5.53 Total: -0.41 kcal Atomic # 6 Polarization: -21.46 SS G_CDS: 0.04 Total: -21.41 kcal Atomic # 7 Polarization: -27.06 SS G_CDS: 0.76 Total: -26.30 kcal Atomic # 8 Polarization: -12.30 SS G_CDS: -0.63 Total: -12.92 kcal Atomic # 14 Polarization: 25.12 SS G_CDS: -4.49 Total: 20.62 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -30.58 -5.24 -35.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221804296.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.708 kcal (2) G-P(sol) polarization free energy of solvation -30.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds