Wall clock time and date at job start Mon Mar 30 2020 05:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35986 * 117.00551 * 2 1 4 4 C 1.38566 * 120.07402 * 95.23401 * 3 2 1 5 5 C 1.50693 * 119.99879 * 0.04850 * 4 3 2 6 6 C 1.38242 * 120.00029 * 180.02562 * 4 3 2 7 7 C 1.38261 * 120.14607 * 359.74829 * 6 4 3 8 8 C 1.38242 * 120.14458 * 0.50524 * 7 6 4 9 9 C 1.50700 * 119.99937 * 179.77197 * 8 7 6 10 10 H 1.09004 * 109.47227 * 179.72978 * 9 8 7 11 11 C 1.53006 * 109.46787 * 299.72613 * 9 8 7 12 12 C 1.50695 * 109.47277 * 59.72240 * 9 8 7 13 13 H 1.07996 * 120.00140 * 354.36764 * 12 9 8 14 14 C 1.37879 * 119.99985 * 174.35952 * 12 9 8 15 15 N 1.31507 * 119.99810 * 156.98950 * 14 12 9 16 16 Si 1.86797 * 120.00027 * 336.98800 * 14 12 9 17 17 H 1.48497 * 109.47131 * 180.02562 * 16 14 12 18 18 H 1.48503 * 109.47253 * 60.00128 * 16 14 12 19 19 H 1.48503 * 109.47409 * 300.00274 * 16 14 12 20 20 C 1.38566 * 119.99770 * 359.49675 * 8 7 6 21 21 O 1.36001 * 120.06928 * 180.22856 * 20 8 7 22 22 C 1.42901 * 116.99951 * 95.05193 * 21 20 8 23 23 H 1.08994 * 109.46896 * 305.04499 * 1 2 3 24 24 H 1.09000 * 109.46831 * 65.04389 * 1 2 3 25 25 H 1.09000 * 109.47338 * 185.04058 * 1 2 3 26 26 H 1.08999 * 109.47169 * 89.99814 * 5 4 3 27 27 H 1.09003 * 109.46946 * 209.99630 * 5 4 3 28 28 H 1.09004 * 109.47404 * 329.99678 * 5 4 3 29 29 H 1.07996 * 119.92701 * 179.97438 * 6 4 3 30 30 H 1.07993 * 119.92535 * 180.25901 * 7 6 4 31 31 H 1.09005 * 109.46657 * 173.29235 * 11 9 8 32 32 H 1.09007 * 109.46938 * 293.28198 * 11 9 8 33 33 H 1.08995 * 109.47143 * 53.28480 * 11 9 8 34 34 H 0.97001 * 120.00623 * 354.92794 * 15 14 12 35 35 H 1.09000 * 109.47209 * 184.98761 * 22 21 20 36 36 H 1.08995 * 109.47099 * 304.98897 * 22 21 20 37 37 H 1.09005 * 109.46887 * 64.98734 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2116 0.0000 4 6 2.4593 1.7806 1.1941 5 6 2.2250 1.0562 2.4946 6 6 3.0864 3.0126 1.1924 7 6 3.3079 3.6773 0.0005 8 6 2.8939 3.1176 -1.1939 9 6 3.1325 3.8473 -2.4907 10 1 2.7450 3.2534 -3.3185 11 6 2.4168 5.1992 -2.4542 12 6 4.6114 4.0669 -2.6788 13 1 5.3018 3.7958 -1.8938 14 6 5.0832 4.6138 -3.8533 15 7 6.2507 5.2187 -3.8745 16 14 4.0641 4.4954 -5.4143 17 1 4.7885 5.1560 -6.5297 18 1 2.7573 5.1689 -5.2046 19 1 3.8364 3.0668 -5.7498 20 6 2.2647 1.8830 -1.1991 21 8 1.8610 1.3290 -2.3737 22 6 2.7544 0.4026 -2.9949 23 1 -0.3633 0.5901 0.8413 24 1 -0.3633 0.4336 -0.9317 25 1 -0.3634 -1.0237 0.0903 26 1 3.0806 0.4175 2.7139 27 1 2.0985 1.7825 3.2974 28 1 1.3264 0.4445 2.4131 29 1 3.4072 3.4551 2.1238 30 1 3.8018 4.6376 0.0029 31 1 2.6853 5.7764 -3.3390 32 1 1.3386 5.0392 -2.4382 33 1 2.7165 5.7449 -1.5595 34 1 6.7466 5.3451 -3.0505 35 1 2.3528 0.1042 -3.9633 36 1 3.7272 0.8740 -3.1347 37 1 2.8646 -0.4770 -2.3606 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000221804296.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:44 Heat of formation + Delta-G solvation = -80.877769 kcal Electronic energy + Delta-G solvation = -19076.810004 eV Core-core repulsion = 16204.874209 eV Total energy + Delta-G solvation = -2871.935794 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.55648 -38.93454 -38.27501 -36.24776 -33.96872 -31.86261 -30.85217 -28.48161 -27.57593 -27.02893 -26.62302 -23.53766 -23.02707 -21.25438 -19.59151 -18.39842 -17.90627 -17.78115 -16.85604 -16.21261 -15.89179 -15.54762 -15.46621 -15.00906 -14.68625 -14.46298 -14.17672 -14.05728 -13.49852 -13.30932 -13.19241 -12.92845 -12.77649 -12.52991 -12.37547 -12.20253 -12.04112 -11.67487 -11.64422 -11.43377 -11.09243 -10.46774 -10.38960 -9.48659 -9.36722 -8.68197 -6.32328 0.13734 0.33443 1.45590 1.49720 1.70874 2.34513 2.47763 2.78803 3.01648 3.11383 3.85869 4.03703 4.28644 4.31955 4.40151 4.44188 4.44756 4.48577 4.51823 4.60763 4.70548 4.74714 4.76585 4.78765 4.84063 4.91242 4.99037 5.20042 5.25450 5.32968 5.46853 5.55261 5.72971 5.80034 6.03493 6.10454 6.27558 6.60134 6.73083 7.39131 8.62269 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.027263 B = 0.007761 C = 0.006723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.798194 B = 3607.056004 C = 4163.598257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.342 6.342 3 C 0.066 3.934 4 C -0.114 4.114 5 C -0.097 4.097 6 C -0.109 4.109 7 C -0.115 4.115 8 C -0.067 4.067 9 C 0.050 3.950 10 H 0.030 0.970 11 C -0.133 4.133 12 C -0.594 4.594 13 H 0.022 0.978 14 C -0.007 4.007 15 N -0.930 5.930 16 Si 1.069 2.931 17 H -0.287 1.287 18 H -0.251 1.251 19 H -0.267 1.267 20 C 0.048 3.952 21 O -0.343 6.343 22 C 0.039 3.961 23 H 0.054 0.946 24 H 0.038 0.962 25 H 0.118 0.882 26 H 0.075 0.925 27 H 0.086 0.914 28 H 0.071 0.929 29 H 0.156 0.844 30 H 0.117 0.883 31 H 0.042 0.958 32 H 0.046 0.954 33 H 0.046 0.954 34 H 0.255 0.745 35 H 0.113 0.887 36 H 0.027 0.973 37 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.307 -9.078 9.575 18.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.259 6.259 3 C 0.022 3.978 4 C -0.114 4.114 5 C -0.153 4.153 6 C -0.126 4.126 7 C -0.133 4.133 8 C -0.068 4.068 9 C 0.031 3.969 10 H 0.048 0.952 11 C -0.191 4.191 12 C -0.631 4.631 13 H 0.040 0.960 14 C -0.206 4.206 15 N -0.565 5.565 16 Si 0.891 3.109 17 H -0.213 1.213 18 H -0.175 1.175 19 H -0.192 1.192 20 C 0.004 3.996 21 O -0.261 6.261 22 C -0.055 4.055 23 H 0.073 0.927 24 H 0.057 0.943 25 H 0.136 0.864 26 H 0.094 0.906 27 H 0.105 0.895 28 H 0.089 0.911 29 H 0.173 0.827 30 H 0.135 0.865 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.132 0.868 36 H 0.046 0.954 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.380 -8.887 7.875 17.153 hybrid contribution 0.822 0.021 1.415 1.637 sum -11.557 -8.866 9.290 17.277 Atomic orbital electron populations 1.23151 0.77505 1.04523 1.00805 1.85928 1.21448 1.24182 1.94355 1.18927 1.00211 0.87030 0.91586 1.20313 1.00560 0.95154 0.95394 1.20650 1.02691 1.00071 0.91909 1.21232 0.98793 0.94275 0.98344 1.21037 0.99719 1.00740 0.91839 1.20459 0.94453 0.94649 0.97223 1.17953 0.94976 0.92820 0.91182 0.95177 1.22037 0.98178 0.97928 1.00955 1.21992 0.91943 1.45700 1.03488 0.96002 1.26920 0.97651 0.91408 1.04647 1.70964 1.16491 1.38130 1.30939 0.83738 0.75806 0.78279 0.73117 1.21302 1.17504 1.19250 1.19129 1.01526 0.93115 0.85784 1.85869 1.44468 1.60793 1.34929 1.23045 0.93184 0.90943 0.98342 0.92707 0.94330 0.86362 0.90648 0.89484 0.91054 0.82688 0.86496 0.93862 0.93539 0.93491 0.93598 0.86833 0.95374 0.92772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.77 10.84 113.37 1.23 1.99 16 2 O -0.34 -10.51 9.31 -79.53 -0.74 -11.25 16 3 C 0.07 2.32 5.71 22.57 0.13 2.45 16 4 C -0.11 -3.45 5.89 -19.79 -0.12 -3.57 16 5 C -0.10 -2.06 9.79 71.23 0.70 -1.36 16 6 C -0.11 -3.43 9.70 22.28 0.22 -3.21 16 7 C -0.12 -4.57 8.56 22.28 0.19 -4.38 16 8 C -0.07 -2.97 4.76 -19.79 -0.09 -3.06 16 9 C 0.05 2.43 2.04 -12.29 -0.03 2.41 16 10 H 0.03 1.51 5.54 -2.38 -0.01 1.50 16 11 C -0.13 -5.94 8.83 71.98 0.64 -5.31 16 12 C -0.59 -33.93 8.48 25.60 0.22 -33.71 16 13 H 0.02 1.37 7.77 -2.91 -0.02 1.35 16 14 C -0.01 -0.39 5.20 84.66 0.44 0.05 16 15 N -0.93 -58.08 13.69 21.45 0.29 -57.79 16 16 Si 1.07 50.81 26.44 68.60 1.81 52.63 16 17 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 18 H -0.25 -10.84 6.14 99.48 0.61 -10.23 16 19 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 20 C 0.05 1.97 5.71 22.57 0.13 2.10 16 21 O -0.34 -13.77 8.97 -79.69 -0.72 -14.48 16 22 C 0.04 1.36 11.11 113.37 1.26 2.62 16 23 H 0.05 1.09 7.87 -2.39 -0.02 1.07 16 24 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 25 H 0.12 1.91 8.14 -2.39 -0.02 1.89 16 26 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.09 1.44 8.09 -2.39 -0.02 1.42 16 28 H 0.07 1.41 6.99 -2.39 -0.02 1.39 16 29 H 0.16 3.74 8.06 -2.91 -0.02 3.72 16 30 H 0.12 4.80 7.55 -2.91 -0.02 4.78 16 31 H 0.04 1.97 5.46 -2.38 -0.01 1.96 16 32 H 0.05 1.82 8.14 -2.38 -0.02 1.81 16 33 H 0.05 2.01 7.19 -2.39 -0.02 1.99 16 34 H 0.26 16.10 8.73 -92.71 -0.81 15.29 16 35 H 0.11 3.23 8.14 -2.39 -0.02 3.21 16 36 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.05 1.72 8.14 -2.38 -0.02 1.70 16 Total: -1.00 -68.13 305.60 6.47 -61.65 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: 0.91 Total: 12.23 kcal Atomic # 6 Polarization: -47.90 SS G_CDS: 4.91 Total: -42.99 kcal Atomic # 7 Polarization: -58.08 SS G_CDS: 0.29 Total: -57.79 kcal Atomic # 8 Polarization: -24.28 SS G_CDS: -1.46 Total: -25.73 kcal Atomic # 14 Polarization: 50.81 SS G_CDS: 1.81 Total: 52.63 kcal Total: -68.13 6.47 -61.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221804296.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.223 kcal (2) G-P(sol) polarization free energy of solvation -68.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds