Wall clock time and date at job start Mon Mar 30 2020 05:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50700 * 109.47568 * 2 1 4 4 C 1.38252 * 119.92538 * 89.99415 * 3 2 1 5 5 C 1.38247 * 120.14211 * 180.02562 * 4 3 2 6 6 C 1.38562 * 120.00483 * 359.97438 * 5 4 3 7 7 O 1.35988 * 120.07446 * 179.97438 * 6 5 4 8 8 C 1.42901 * 117.00171 * 0.02929 * 7 6 5 9 9 C 1.52998 * 109.47063 * 179.97438 * 8 7 6 10 10 C 1.50697 * 109.47046 * 179.97438 * 9 8 7 11 11 H 1.08003 * 120.00190 * 359.97438 * 10 9 8 12 12 C 1.37879 * 119.99926 * 179.97438 * 10 9 8 13 13 N 1.31520 * 119.99821 * 179.97438 * 12 10 9 14 14 Si 1.86801 * 120.00026 * 0.02562 * 12 10 9 15 15 H 1.48494 * 109.46999 * 90.00075 * 14 12 10 16 16 H 1.48507 * 109.46831 * 209.99668 * 14 12 10 17 17 H 1.48493 * 109.47151 * 329.99578 * 14 12 10 18 18 C 1.39154 * 119.85006 * 0.02562 * 6 5 4 19 19 O 1.35991 * 120.07345 * 180.02562 * 18 6 5 20 20 C 1.42903 * 117.00364 * 180.02562 * 19 18 6 21 21 C 1.38245 * 119.92713 * 270.25744 * 3 2 1 22 22 H 1.09001 * 109.47374 * 299.99963 * 1 2 3 23 23 H 1.09009 * 109.47307 * 59.99651 * 1 2 3 24 24 H 1.08996 * 109.47507 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47374 * 240.00037 * 2 1 3 26 26 H 1.09004 * 109.46752 * 119.99928 * 2 1 3 27 27 H 1.07996 * 119.92897 * 0.02562 * 4 3 2 28 28 H 1.08008 * 119.99679 * 179.97438 * 5 4 3 29 29 H 1.08998 * 109.46619 * 299.99809 * 8 7 6 30 30 H 1.08999 * 109.47403 * 59.99403 * 8 7 6 31 31 H 1.09003 * 109.46883 * 299.99628 * 9 8 7 32 32 H 1.08999 * 109.47430 * 59.99504 * 9 8 7 33 33 H 0.97000 * 119.99822 * 180.02562 * 13 12 10 34 34 H 1.09002 * 109.47382 * 179.97438 * 20 19 18 35 35 H 1.09001 * 109.46938 * 59.99845 * 20 19 18 36 36 H 1.09004 * 109.46926 * 299.99967 * 20 19 18 37 37 H 1.08004 * 119.99970 * 0.02562 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2622 2.0710 1.1982 5 6 2.7226 3.3746 1.2034 6 6 2.9553 4.0321 0.0061 7 8 3.4077 5.3145 0.0096 8 6 3.6224 5.9233 1.2845 9 6 4.1278 7.3539 1.0879 10 6 4.3536 7.9961 2.4323 11 1 4.1560 7.4397 3.3367 12 6 4.8125 9.2941 2.5080 13 7 5.0091 9.8547 3.6814 14 14 5.1536 10.2568 0.9439 15 1 3.9240 10.9786 0.5289 16 1 6.2421 11.2359 1.1928 17 1 5.5659 9.3214 -0.1331 18 6 2.7239 3.3775 -1.1998 19 8 2.9512 4.0183 -2.3776 20 6 2.6913 3.2847 -3.5761 21 6 2.2572 2.0728 -1.1981 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8932 -0.5138 0.8900 27 1 2.0817 1.5596 2.1321 28 1 2.9010 3.8805 2.1409 29 1 2.6851 5.9418 1.8406 30 1 4.3636 5.3497 1.8409 31 1 5.0651 7.3349 0.5319 32 1 3.3868 7.9278 0.5313 33 1 5.3315 10.7680 3.7346 34 1 2.9128 3.9107 -4.4405 35 1 1.6423 2.9894 -3.6010 36 1 3.3200 2.3947 -3.6009 37 1 2.0724 1.5641 -2.1327 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000232342510.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:42 Heat of formation + Delta-G solvation = -68.042831 kcal Electronic energy + Delta-G solvation = -17800.719805 eV Core-core repulsion = 14929.340575 eV Total energy + Delta-G solvation = -2871.379230 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.37157 -38.18924 -37.29891 -33.67224 -33.03161 -30.79923 -30.09871 -28.78682 -27.08941 -25.27172 -23.54936 -22.34804 -21.03581 -20.27862 -18.22225 -17.12534 -16.57570 -16.18984 -15.88426 -15.07160 -14.65801 -14.51896 -14.40303 -14.15476 -13.77812 -13.34570 -12.85474 -12.72047 -12.43538 -12.32116 -11.81367 -11.65281 -11.60774 -11.12057 -10.96289 -10.91722 -10.80115 -10.67732 -10.14584 -9.93292 -9.76115 -9.30915 -8.59373 -8.57270 -7.50077 -6.10946 -4.11511 1.41527 1.56705 3.31576 3.37425 3.38448 3.45487 3.75939 3.82429 4.42304 4.65756 4.81699 5.02658 5.04129 5.11689 5.17356 5.23077 5.23516 5.39316 5.43500 5.49198 5.50758 5.72453 5.78285 5.86340 5.96795 5.98092 6.04685 6.27725 6.37866 6.53146 6.67272 6.82635 7.06715 7.28308 7.37854 7.66778 8.01370 8.41681 8.89805 9.49750 11.01587 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.030928 B = 0.004591 C = 0.004065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.106220 B = 6097.863494 C = 6886.605731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.077 4.077 3 C -0.097 4.097 4 C -0.111 4.111 5 C -0.174 4.174 6 C 0.114 3.886 7 O -0.309 6.309 8 C 0.071 3.929 9 C -0.008 4.008 10 C -0.526 4.526 11 H 0.074 0.926 12 C 0.072 3.928 13 N -0.899 5.899 14 Si 0.880 3.120 15 H -0.275 1.275 16 H -0.286 1.286 17 H -0.262 1.262 18 C 0.090 3.910 19 O -0.304 6.304 20 C 0.028 3.972 21 C -0.172 4.172 22 H 0.056 0.944 23 H 0.054 0.946 24 H 0.054 0.946 25 H 0.067 0.933 26 H 0.070 0.930 27 H 0.123 0.877 28 H 0.139 0.861 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.028 0.972 32 H 0.023 0.977 33 H 0.265 0.735 34 H 0.097 0.903 35 H 0.051 0.949 36 H 0.051 0.949 37 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.235 -19.144 -10.816 23.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.115 4.115 3 C -0.097 4.097 4 C -0.130 4.130 5 C -0.193 4.193 6 C 0.067 3.933 7 O -0.223 6.223 8 C -0.003 4.003 9 C -0.046 4.046 10 C -0.564 4.564 11 H 0.092 0.908 12 C -0.130 4.130 13 N -0.537 5.537 14 Si 0.707 3.293 15 H -0.201 1.201 16 H -0.212 1.212 17 H -0.187 1.187 18 C 0.045 3.955 19 O -0.218 6.218 20 C -0.067 4.067 21 C -0.191 4.191 22 H 0.076 0.924 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.085 0.915 26 H 0.089 0.911 27 H 0.141 0.859 28 H 0.157 0.843 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.046 0.954 32 H 0.042 0.958 33 H 0.075 0.925 34 H 0.115 0.885 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -7.054 -18.633 -10.916 22.718 hybrid contribution 0.105 0.370 -0.543 0.666 sum -6.949 -18.262 -11.459 22.652 Atomic orbital electron populations 1.21759 0.95004 1.01335 1.02312 1.20435 0.95933 0.92628 1.02472 1.19467 1.01598 0.96297 0.92385 1.20704 1.00655 0.94172 0.97445 1.21209 1.04891 0.96243 0.96984 1.18422 0.97743 0.85937 0.91156 1.86219 1.79479 1.22313 1.34262 1.23077 0.99764 0.95817 0.81612 1.19569 0.96921 0.89393 0.98692 1.20855 1.45518 0.98632 0.91370 0.90750 1.24929 0.94514 0.97342 0.96214 1.69898 1.45896 1.14314 1.23593 0.86759 0.78393 0.80047 0.84115 1.20056 1.21205 1.18680 1.18283 1.01403 0.91344 0.84479 1.86227 1.83032 1.40636 1.11887 1.23008 1.00362 0.97460 0.85888 1.20808 1.05972 0.93427 0.98850 0.92441 0.92710 0.92675 0.91480 0.91129 0.85945 0.84343 0.92621 0.92592 0.95389 0.95830 0.92484 0.88457 0.93062 0.93036 0.85357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.89 37.15 0.37 -0.83 16 2 C -0.08 -0.69 6.06 -27.89 -0.17 -0.86 16 3 C -0.10 -1.18 5.13 -104.61 -0.54 -1.72 16 4 C -0.11 -1.46 9.69 -39.57 -0.38 -1.85 16 5 C -0.17 -2.74 9.04 -39.46 -0.36 -3.10 16 6 C 0.11 2.07 6.70 -39.12 -0.26 1.81 16 7 O -0.31 -6.53 9.92 -34.20 -0.34 -6.87 16 8 C 0.07 1.53 4.68 37.16 0.17 1.70 16 9 C -0.01 -0.21 4.41 -27.89 -0.12 -0.33 16 10 C -0.53 -15.06 9.66 -34.44 -0.33 -15.39 16 11 H 0.07 2.24 7.99 -52.48 -0.42 1.82 16 12 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 13 N -0.90 -27.58 13.96 55.43 0.77 -26.81 16 14 Si 0.88 21.98 27.47 -169.99 -4.67 17.31 16 15 H -0.27 -6.74 7.11 56.52 0.40 -6.33 16 16 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 17 H -0.26 -6.41 6.54 56.52 0.37 -6.04 16 18 C 0.09 1.46 6.70 -39.12 -0.26 1.20 16 19 O -0.30 -4.90 10.28 -34.21 -0.35 -5.25 16 20 C 0.03 0.29 9.81 101.05 0.99 1.28 16 21 C -0.17 -2.22 8.69 -39.46 -0.34 -2.56 16 22 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 23 H 0.05 0.46 8.14 -51.92 -0.42 0.03 16 24 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 26 H 0.07 0.57 8.08 -51.93 -0.42 0.15 16 27 H 0.12 1.32 8.06 -52.49 -0.42 0.89 16 28 H 0.14 2.11 6.30 -52.48 -0.33 1.78 16 29 H 0.06 1.14 7.66 -51.93 -0.40 0.74 16 30 H 0.06 1.14 7.66 -51.93 -0.40 0.75 16 31 H 0.03 0.71 7.20 -51.93 -0.37 0.33 16 32 H 0.02 0.59 7.57 -51.93 -0.39 0.20 16 33 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 34 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.05 0.45 7.65 -51.93 -0.40 0.05 16 36 H 0.05 0.45 7.67 -51.93 -0.40 0.05 16 37 H 0.13 1.31 6.30 -52.48 -0.33 0.98 16 LS Contribution 309.44 15.07 4.66 4.66 Total: -1.00 -32.21 309.44 -6.82 -39.03 By element: Atomic # 1 Polarization: 2.12 SS G_CDS: -5.56 Total: -3.44 kcal Atomic # 6 Polarization: -17.30 SS G_CDS: -1.33 Total: -18.63 kcal Atomic # 7 Polarization: -27.58 SS G_CDS: 0.77 Total: -26.81 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: -0.69 Total: -12.12 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.67 Total: 17.31 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -32.21 -6.82 -39.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232342510.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.012 kcal (2) G-P(sol) polarization free energy of solvation -32.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds