Wall clock time and date at job start Mon Mar 30 2020 05:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50700 * 109.47568 * 2 1 4 4 C 1.38252 * 119.92538 * 89.99415 * 3 2 1 5 5 C 1.38247 * 120.14211 * 180.02562 * 4 3 2 6 6 C 1.38562 * 120.00483 * 359.97438 * 5 4 3 7 7 O 1.35988 * 120.07446 * 179.97438 * 6 5 4 8 8 C 1.42901 * 117.00171 * 0.02929 * 7 6 5 9 9 C 1.52998 * 109.47063 * 179.97438 * 8 7 6 10 10 C 1.50697 * 109.47046 * 179.97438 * 9 8 7 11 11 H 1.08003 * 120.00190 * 359.97438 * 10 9 8 12 12 C 1.37879 * 119.99926 * 179.97438 * 10 9 8 13 13 N 1.31520 * 119.99821 * 179.97438 * 12 10 9 14 14 Si 1.86801 * 120.00026 * 0.02562 * 12 10 9 15 15 H 1.48494 * 109.46999 * 90.00075 * 14 12 10 16 16 H 1.48507 * 109.46831 * 209.99668 * 14 12 10 17 17 H 1.48493 * 109.47151 * 329.99578 * 14 12 10 18 18 C 1.39154 * 119.85006 * 0.02562 * 6 5 4 19 19 O 1.35991 * 120.07345 * 180.02562 * 18 6 5 20 20 C 1.42903 * 117.00364 * 180.02562 * 19 18 6 21 21 C 1.38245 * 119.92713 * 270.25744 * 3 2 1 22 22 H 1.09001 * 109.47374 * 299.99963 * 1 2 3 23 23 H 1.09009 * 109.47307 * 59.99651 * 1 2 3 24 24 H 1.08996 * 109.47507 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47374 * 240.00037 * 2 1 3 26 26 H 1.09004 * 109.46752 * 119.99928 * 2 1 3 27 27 H 1.07996 * 119.92897 * 0.02562 * 4 3 2 28 28 H 1.08008 * 119.99679 * 179.97438 * 5 4 3 29 29 H 1.08998 * 109.46619 * 299.99809 * 8 7 6 30 30 H 1.08999 * 109.47403 * 59.99403 * 8 7 6 31 31 H 1.09003 * 109.46883 * 299.99628 * 9 8 7 32 32 H 1.08999 * 109.47430 * 59.99504 * 9 8 7 33 33 H 0.97000 * 119.99822 * 180.02562 * 13 12 10 34 34 H 1.09002 * 109.47382 * 179.97438 * 20 19 18 35 35 H 1.09001 * 109.46938 * 59.99845 * 20 19 18 36 36 H 1.09004 * 109.46926 * 299.99967 * 20 19 18 37 37 H 1.08004 * 119.99970 * 0.02562 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2622 2.0710 1.1982 5 6 2.7226 3.3746 1.2034 6 6 2.9553 4.0321 0.0061 7 8 3.4077 5.3145 0.0096 8 6 3.6224 5.9233 1.2845 9 6 4.1278 7.3539 1.0879 10 6 4.3536 7.9961 2.4323 11 1 4.1560 7.4397 3.3367 12 6 4.8125 9.2941 2.5080 13 7 5.0091 9.8547 3.6814 14 14 5.1536 10.2568 0.9439 15 1 3.9240 10.9786 0.5289 16 1 6.2421 11.2359 1.1928 17 1 5.5659 9.3214 -0.1331 18 6 2.7239 3.3775 -1.1998 19 8 2.9512 4.0183 -2.3776 20 6 2.6913 3.2847 -3.5761 21 6 2.2572 2.0728 -1.1981 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8932 -0.5138 0.8900 27 1 2.0817 1.5596 2.1321 28 1 2.9010 3.8805 2.1409 29 1 2.6851 5.9418 1.8406 30 1 4.3636 5.3497 1.8409 31 1 5.0651 7.3349 0.5319 32 1 3.3868 7.9278 0.5313 33 1 5.3315 10.7680 3.7346 34 1 2.9128 3.9107 -4.4405 35 1 1.6423 2.9894 -3.6010 36 1 3.3200 2.3947 -3.6009 37 1 2.0724 1.5641 -2.1327 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000232342510.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:41 Heat of formation + Delta-G solvation = -87.273864 kcal Electronic energy + Delta-G solvation = -17801.553725 eV Core-core repulsion = 14929.340575 eV Total energy + Delta-G solvation = -2872.213150 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.53457 -39.50236 -38.39093 -35.49686 -34.28688 -32.70288 -31.20679 -29.84624 -27.97966 -27.11201 -24.47926 -23.75226 -22.29794 -21.72481 -19.68115 -18.76026 -17.92705 -17.48836 -17.18339 -16.38151 -16.33296 -15.69645 -15.55904 -15.24963 -14.95560 -14.54456 -14.42558 -14.00175 -13.85596 -13.34421 -13.24018 -12.94837 -12.57365 -12.51814 -12.31563 -12.16842 -11.87523 -11.79228 -11.73541 -11.71986 -11.49591 -11.42780 -10.82755 -9.66594 -8.70878 -8.36423 -6.42970 0.30559 0.44623 1.34587 1.35827 1.49412 2.32192 2.32897 2.40037 2.71585 2.98398 3.77651 3.86230 4.04763 4.15769 4.20954 4.29936 4.33376 4.40929 4.41424 4.52841 4.58525 4.64366 4.67567 4.72965 4.82775 5.08264 5.11147 5.12029 5.23772 5.28156 5.34132 5.43571 5.50567 5.65492 5.80934 6.14030 6.20412 6.62093 6.68543 7.22336 8.79276 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.030928 B = 0.004591 C = 0.004065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.106220 B = 6097.863494 C = 6886.605731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.076 4.076 3 C -0.084 4.084 4 C -0.116 4.116 5 C -0.181 4.181 6 C 0.064 3.936 7 O -0.332 6.332 8 C 0.086 3.914 9 C -0.005 4.005 10 C -0.537 4.537 11 H 0.044 0.956 12 C 0.016 3.984 13 N -0.941 5.941 14 Si 0.947 3.053 15 H -0.264 1.264 16 H -0.276 1.276 17 H -0.254 1.254 18 C 0.079 3.921 19 O -0.339 6.339 20 C 0.018 3.982 21 C -0.167 4.167 22 H 0.049 0.951 23 H 0.051 0.949 24 H 0.074 0.926 25 H 0.085 0.915 26 H 0.083 0.917 27 H 0.148 0.852 28 H 0.133 0.867 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.025 0.975 32 H 0.023 0.977 33 H 0.271 0.729 34 H 0.112 0.888 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.998 -21.323 -12.802 26.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.113 4.113 3 C -0.085 4.085 4 C -0.134 4.134 5 C -0.199 4.199 6 C 0.019 3.981 7 O -0.247 6.247 8 C 0.012 3.988 9 C -0.042 4.042 10 C -0.575 4.575 11 H 0.062 0.938 12 C -0.182 4.182 13 N -0.581 5.581 14 Si 0.770 3.230 15 H -0.189 1.189 16 H -0.201 1.201 17 H -0.178 1.178 18 C 0.034 3.966 19 O -0.254 6.254 20 C -0.076 4.076 21 C -0.185 4.185 22 H 0.068 0.932 23 H 0.070 0.930 24 H 0.093 0.907 25 H 0.103 0.897 26 H 0.102 0.898 27 H 0.165 0.835 28 H 0.150 0.850 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.043 0.957 32 H 0.042 0.958 33 H 0.080 0.920 34 H 0.130 0.870 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -7.830 -20.843 -12.911 25.738 hybrid contribution 0.274 0.861 0.075 0.907 sum -7.556 -19.981 -12.837 24.923 Atomic orbital electron populations 1.21754 0.94237 1.02508 1.01836 1.20538 0.96411 0.90288 1.04077 1.19960 0.99130 0.97765 0.91614 1.21032 0.99989 0.93175 0.99232 1.21307 1.05126 0.97413 0.96099 1.18844 1.00963 0.85226 0.93089 1.86113 1.80948 1.24438 1.33202 1.22664 0.99734 0.94082 0.82365 1.19418 0.96828 0.91510 0.96449 1.21105 1.45372 0.98947 0.92045 0.93790 1.25845 0.94205 0.98466 0.99732 1.70021 1.47010 1.15053 1.25979 0.85698 0.78827 0.78646 0.79792 1.18905 1.20143 1.17828 1.18539 1.01594 0.92329 0.84118 1.86172 1.83385 1.42619 1.13176 1.23347 1.01845 0.98190 0.84200 1.21172 1.04611 0.92136 1.00597 0.93201 0.92982 0.90732 0.89689 0.89835 0.83459 0.84953 0.92453 0.92461 0.95711 0.95814 0.92027 0.86954 0.91372 0.91321 0.82235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.89 71.98 0.71 -1.14 16 2 C -0.08 -1.05 6.06 29.85 0.18 -0.87 16 3 C -0.08 -1.81 5.13 -19.86 -0.10 -1.91 16 4 C -0.12 -2.85 9.69 22.28 0.22 -2.64 16 5 C -0.18 -5.72 9.04 22.35 0.20 -5.52 16 6 C 0.06 2.37 6.70 22.57 0.15 2.52 16 7 O -0.33 -14.47 9.92 -79.55 -0.79 -15.26 16 8 C 0.09 3.82 4.68 71.98 0.34 4.16 16 9 C 0.00 -0.23 4.41 29.85 0.13 -0.10 16 10 C -0.54 -31.70 9.66 25.60 0.25 -31.46 16 11 H 0.04 2.78 7.99 -2.91 -0.02 2.76 16 12 C 0.02 0.94 5.47 84.65 0.46 1.40 16 13 N -0.94 -58.97 13.96 21.45 0.30 -58.67 16 14 Si 0.95 45.49 27.47 68.60 1.88 47.37 16 15 H -0.26 -12.17 7.11 99.48 0.71 -11.46 16 16 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 17 H -0.25 -11.80 6.54 99.48 0.65 -11.15 16 18 C 0.08 2.53 6.70 22.57 0.15 2.68 16 19 O -0.34 -10.72 10.28 -79.59 -0.82 -11.54 16 20 C 0.02 0.34 9.81 113.37 1.11 1.45 16 21 C -0.17 -3.90 8.69 22.35 0.19 -3.70 16 22 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 23 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 24 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 25 H 0.08 0.93 8.09 -2.39 -0.02 0.91 16 26 H 0.08 0.99 8.08 -2.39 -0.02 0.98 16 27 H 0.15 2.81 8.06 -2.91 -0.02 2.78 16 28 H 0.13 4.20 6.30 -2.91 -0.02 4.18 16 29 H 0.06 2.46 7.66 -2.39 -0.02 2.44 16 30 H 0.06 2.45 7.66 -2.39 -0.02 2.44 16 31 H 0.02 1.26 7.20 -2.39 -0.02 1.25 16 32 H 0.02 1.19 7.57 -2.39 -0.02 1.18 16 33 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 34 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.07 1.00 7.65 -2.39 -0.02 0.98 16 36 H 0.07 1.00 7.67 -2.38 -0.02 0.98 16 37 H 0.16 2.62 6.30 -2.91 -0.02 2.61 16 Total: -1.00 -71.34 309.44 5.56 -65.79 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: 0.99 Total: 7.45 kcal Atomic # 6 Polarization: -39.13 SS G_CDS: 4.00 Total: -35.13 kcal Atomic # 7 Polarization: -58.97 SS G_CDS: 0.30 Total: -58.67 kcal Atomic # 8 Polarization: -25.20 SS G_CDS: -1.61 Total: -26.80 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 1.88 Total: 47.37 kcal Total: -71.34 5.56 -65.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232342510.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.489 kcal (2) G-P(sol) polarization free energy of solvation -71.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds