Wall clock time and date at job start Mon Mar 30 2020 06:09:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35734 * 117.00472 * 2 1 4 4 C 1.38911 * 120.28864 * 275.14680 * 3 2 1 5 5 O 1.36013 * 120.01741 * 359.97438 * 4 3 2 6 6 C 1.38667 * 119.96127 * 179.97438 * 4 3 2 7 7 C 1.38812 * 120.53446 * 359.97438 * 6 4 3 8 8 C 1.50696 * 119.71055 * 179.97438 * 7 6 4 9 9 C 1.53006 * 109.46955 * 359.97438 * 8 7 6 10 10 C 1.53002 * 109.47526 * 119.99857 * 8 7 6 11 11 C 1.53009 * 109.47210 * 240.00126 * 8 7 6 12 12 C 1.36456 * 120.58176 * 359.71302 * 7 6 4 13 13 C 1.40804 * 120.02045 * 0.56966 * 12 7 6 14 14 C 1.41182 * 120.26549 * 179.71539 * 13 12 7 15 15 H 1.08000 * 120.00389 * 150.24099 * 14 13 12 16 16 C 1.39924 * 119.99676 * 330.23999 * 14 13 12 17 17 N 1.30871 * 120.00148 * 335.11932 * 16 14 13 18 18 Si 1.86799 * 120.00109 * 155.12352 * 16 14 13 19 19 H 1.48501 * 109.47265 * 179.97438 * 18 16 14 20 20 H 1.48500 * 109.47013 * 299.99753 * 18 16 14 21 21 H 1.48502 * 109.47131 * 59.99808 * 18 16 14 22 22 H 1.09003 * 109.47630 * 180.02562 * 1 2 3 23 23 H 1.09008 * 109.46785 * 299.99748 * 1 2 3 24 24 H 1.08998 * 109.47239 * 59.99273 * 1 2 3 25 25 H 0.96691 * 114.00210 * 90.00753 * 5 4 3 26 26 H 1.07999 * 119.73550 * 179.97438 * 6 4 3 27 27 H 1.08999 * 109.46766 * 60.00325 * 9 8 7 28 28 H 1.08999 * 109.46837 * 180.02562 * 9 8 7 29 29 H 1.08994 * 109.46834 * 300.00057 * 9 8 7 30 30 H 1.08997 * 109.46525 * 60.00158 * 10 8 7 31 31 H 1.08994 * 109.47109 * 180.02562 * 10 8 7 32 32 H 1.08993 * 109.46575 * 300.00273 * 10 8 7 33 33 H 1.08996 * 109.46791 * 59.99424 * 11 8 7 34 34 H 1.08992 * 109.46810 * 179.97438 * 11 8 7 35 35 H 1.09001 * 109.46842 * 299.99529 * 11 8 7 36 36 H 1.08001 * 119.99115 * 180.28026 * 12 7 6 37 37 H 0.97005 * 120.00126 * 354.34637 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2093 0.0000 4 6 2.2676 1.8824 -1.1947 5 8 1.8677 1.3300 -2.3715 6 6 2.8974 3.1178 -1.1867 7 6 3.3094 3.6917 0.0082 8 6 3.9926 5.0348 -0.0048 9 6 4.1046 5.5361 -1.4461 10 6 3.1751 6.0309 0.8200 11 6 5.3925 4.9009 0.5982 12 6 3.0965 3.0527 1.1950 13 6 2.4646 1.7946 1.2142 14 6 2.2472 1.1262 2.4387 15 1 1.4020 0.4630 2.5492 16 6 3.1267 1.3232 3.5090 17 7 4.3605 1.6959 3.2820 18 14 2.5397 1.0541 5.2618 19 1 3.6545 1.3262 6.2044 20 1 1.4100 1.9731 5.5521 21 1 2.0883 -0.3515 5.4224 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 0.9681 1.5695 -2.6328 26 1 3.0687 3.6377 -2.1177 27 1 3.1075 5.6314 -1.8760 28 1 4.5991 6.5074 -1.4555 29 1 4.6872 4.8264 -2.0333 30 1 3.0958 5.6736 1.8467 31 1 3.6691 7.0025 0.8102 32 1 2.1780 6.1263 0.3904 33 1 5.9748 4.1912 0.0105 34 1 5.8867 5.8722 0.5883 35 1 5.3131 4.5436 1.6249 36 1 3.4170 3.5101 2.1194 37 1 4.6892 1.7562 2.3714 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258071064.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:41 Heat of formation + Delta-G solvation = -87.486300 kcal Electronic energy + Delta-G solvation = -19108.340188 eV Core-core repulsion = 16236.117826 eV Total energy + Delta-G solvation = -2872.222362 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.27521 -37.43122 -36.24882 -35.02575 -32.94256 -29.22816 -28.19163 -27.05331 -26.76452 -25.94202 -24.65023 -21.54000 -21.10871 -19.15287 -17.56430 -16.71089 -16.19354 -15.41252 -14.96183 -14.34862 -14.12627 -13.84015 -13.67725 -13.46593 -13.05702 -12.79186 -12.54249 -12.01133 -11.78544 -11.60477 -11.39543 -11.24025 -11.05523 -10.99776 -10.67706 -10.56140 -10.44242 -10.25946 -10.05701 -9.86270 -9.46796 -9.09748 -8.53654 -7.58690 -7.41377 -7.12984 -4.48579 2.46709 2.61214 3.13730 3.20760 3.33227 3.98545 4.37460 4.84411 5.03945 5.27555 5.32669 5.41601 5.55801 5.90767 5.94837 5.96863 6.04369 6.05358 6.17889 6.18860 6.24363 6.34242 6.37109 6.45787 6.53609 6.68788 6.76045 6.82022 6.97279 7.09575 7.37556 7.60995 7.67641 7.80022 7.97295 8.05414 8.32616 8.52620 8.74965 9.06797 10.00859 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.015586 B = 0.010798 C = 0.006955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.041477 B = 2592.448874 C = 4024.675182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.313 6.313 3 C -0.059 4.059 4 C 0.116 3.884 5 O -0.503 6.503 6 C -0.264 4.264 7 C -0.030 4.030 8 C -0.026 4.026 9 C -0.135 4.135 10 C -0.133 4.133 11 C -0.135 4.135 12 C -0.199 4.199 13 C 0.094 3.906 14 C -0.501 4.501 15 H 0.078 0.922 16 C 0.039 3.961 17 N -0.790 5.790 18 Si 1.064 2.936 19 H -0.273 1.273 20 H -0.275 1.275 21 H -0.275 1.275 22 H 0.074 0.926 23 H 0.036 0.964 24 H 0.023 0.977 25 H 0.368 0.632 26 H 0.106 0.894 27 H 0.054 0.946 28 H 0.046 0.954 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.047 0.953 32 H 0.051 0.949 33 H 0.052 0.948 34 H 0.046 0.954 35 H 0.061 0.939 36 H 0.110 0.890 37 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.237 5.325 -2.798 6.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.229 6.229 3 C -0.104 4.104 4 C 0.072 3.928 5 O -0.311 6.311 6 C -0.284 4.284 7 C -0.030 4.030 8 C -0.026 4.026 9 C -0.192 4.192 10 C -0.190 4.190 11 C -0.192 4.192 12 C -0.218 4.218 13 C 0.090 3.910 14 C -0.528 4.528 15 H 0.096 0.904 16 C -0.183 4.183 17 N -0.413 5.413 18 Si 0.887 3.113 19 H -0.198 1.198 20 H -0.200 1.200 21 H -0.200 1.200 22 H 0.092 0.908 23 H 0.055 0.945 24 H 0.042 0.958 25 H 0.221 0.779 26 H 0.124 0.876 27 H 0.073 0.927 28 H 0.065 0.935 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.065 0.935 35 H 0.081 0.919 36 H 0.128 0.872 37 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -2.038 5.016 -1.202 5.546 hybrid contribution -1.213 0.197 -1.788 2.169 sum -3.251 5.213 -2.989 6.832 Atomic orbital electron populations 1.22774 0.83603 1.00887 0.98867 1.86070 1.16850 1.25964 1.94032 1.19100 1.10378 0.89779 0.91140 1.18665 0.99003 0.91589 0.83539 1.84828 1.34414 1.73621 1.38199 1.20456 1.13897 0.96811 0.97243 1.18926 0.97013 0.94062 0.93018 1.19418 0.94976 0.93094 0.95149 1.21889 1.01324 0.99827 0.96202 1.21838 0.99388 0.97560 1.00258 1.21853 0.95291 1.00496 1.01554 1.20621 1.08942 0.95748 0.96480 1.17780 0.90755 0.90715 0.91762 1.20395 1.11853 1.24304 0.96250 0.90404 1.27017 0.93131 0.91855 1.06326 1.70460 1.14595 1.28325 1.27907 0.83656 0.76661 0.77811 0.73175 1.19755 1.20002 1.20050 0.90791 0.94547 0.95826 0.77944 0.87643 0.92734 0.93514 0.92577 0.92327 0.93364 0.92990 0.92863 0.93454 0.91948 0.87204 0.88694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.65 11.13 101.05 1.12 1.78 16 2 O -0.31 -7.72 9.55 -33.43 -0.32 -8.04 16 3 C -0.06 -1.50 5.77 -38.22 -0.22 -1.72 16 4 C 0.12 2.72 6.71 -39.17 -0.26 2.46 16 5 O -0.50 -10.51 13.29 -34.30 -0.46 -10.97 16 6 C -0.26 -5.82 8.91 -39.21 -0.35 -6.16 16 7 C -0.03 -0.64 4.74 -105.05 -0.50 -1.14 16 8 C -0.03 -0.47 0.85 -155.65 -0.13 -0.60 16 9 C -0.14 -2.08 7.12 37.16 0.26 -1.82 16 10 C -0.13 -2.16 8.28 37.16 0.31 -1.85 16 11 C -0.13 -2.31 8.28 37.16 0.31 -2.00 16 12 C -0.20 -4.82 6.57 -39.25 -0.26 -5.08 16 13 C 0.09 2.46 5.21 -106.70 -0.56 1.90 16 14 C -0.50 -13.24 8.59 -37.83 -0.33 -13.57 16 15 H 0.08 2.06 7.79 -52.49 -0.41 1.65 16 16 C 0.04 0.98 4.92 -17.33 -0.09 0.89 16 17 N -0.79 -20.63 12.47 55.55 0.69 -19.94 16 18 Si 1.06 21.37 30.00 -169.99 -5.10 16.27 16 19 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 20 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 21 H -0.28 -5.32 7.11 56.52 0.40 -4.92 16 22 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 23 H 0.04 0.70 8.14 -51.92 -0.42 0.28 16 24 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.37 5.81 9.06 45.56 0.41 6.22 16 26 H 0.11 2.11 5.84 -52.49 -0.31 1.80 16 27 H 0.05 0.82 7.49 -51.93 -0.39 0.43 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.88 7.50 -51.93 -0.39 0.49 16 30 H 0.06 1.01 7.33 -51.93 -0.38 0.63 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 1.17 7.36 -51.93 -0.38 0.78 16 36 H 0.11 2.73 5.75 -52.49 -0.30 2.42 16 37 H 0.30 8.10 6.84 -40.82 -0.28 7.82 16 LS Contribution 303.82 15.07 4.58 4.58 Total: -1.00 -29.03 303.82 -5.89 -34.92 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: -4.60 Total: 10.08 kcal Atomic # 6 Polarization: -26.23 SS G_CDS: -0.68 Total: -26.91 kcal Atomic # 7 Polarization: -20.63 SS G_CDS: 0.69 Total: -19.94 kcal Atomic # 8 Polarization: -18.23 SS G_CDS: -0.78 Total: -19.01 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.10 Total: 16.27 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -29.03 -5.89 -34.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258071064.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.568 kcal (2) G-P(sol) polarization free energy of solvation -29.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds