Wall clock time and date at job start Mon Mar 30 2020 06:09:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35734 * 117.00472 * 2 1 4 4 C 1.38911 * 120.28864 * 275.14680 * 3 2 1 5 5 O 1.36013 * 120.01741 * 359.97438 * 4 3 2 6 6 C 1.38667 * 119.96127 * 179.97438 * 4 3 2 7 7 C 1.38812 * 120.53446 * 359.97438 * 6 4 3 8 8 C 1.50696 * 119.71055 * 179.97438 * 7 6 4 9 9 C 1.53006 * 109.46955 * 359.97438 * 8 7 6 10 10 C 1.53002 * 109.47526 * 119.99857 * 8 7 6 11 11 C 1.53009 * 109.47210 * 240.00126 * 8 7 6 12 12 C 1.36456 * 120.58176 * 359.71302 * 7 6 4 13 13 C 1.40804 * 120.02045 * 0.56966 * 12 7 6 14 14 C 1.41182 * 120.26549 * 179.71539 * 13 12 7 15 15 H 1.08000 * 120.00389 * 150.24099 * 14 13 12 16 16 C 1.39924 * 119.99676 * 330.23999 * 14 13 12 17 17 N 1.30871 * 120.00148 * 335.11932 * 16 14 13 18 18 Si 1.86799 * 120.00109 * 155.12352 * 16 14 13 19 19 H 1.48501 * 109.47265 * 179.97438 * 18 16 14 20 20 H 1.48500 * 109.47013 * 299.99753 * 18 16 14 21 21 H 1.48502 * 109.47131 * 59.99808 * 18 16 14 22 22 H 1.09003 * 109.47630 * 180.02562 * 1 2 3 23 23 H 1.09008 * 109.46785 * 299.99748 * 1 2 3 24 24 H 1.08998 * 109.47239 * 59.99273 * 1 2 3 25 25 H 0.96691 * 114.00210 * 90.00753 * 5 4 3 26 26 H 1.07999 * 119.73550 * 179.97438 * 6 4 3 27 27 H 1.08999 * 109.46766 * 60.00325 * 9 8 7 28 28 H 1.08999 * 109.46837 * 180.02562 * 9 8 7 29 29 H 1.08994 * 109.46834 * 300.00057 * 9 8 7 30 30 H 1.08997 * 109.46525 * 60.00158 * 10 8 7 31 31 H 1.08994 * 109.47109 * 180.02562 * 10 8 7 32 32 H 1.08993 * 109.46575 * 300.00273 * 10 8 7 33 33 H 1.08996 * 109.46791 * 59.99424 * 11 8 7 34 34 H 1.08992 * 109.46810 * 179.97438 * 11 8 7 35 35 H 1.09001 * 109.46842 * 299.99529 * 11 8 7 36 36 H 1.08001 * 119.99115 * 180.28026 * 12 7 6 37 37 H 0.97005 * 120.00126 * 354.34637 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2093 0.0000 4 6 2.2676 1.8824 -1.1947 5 8 1.8677 1.3300 -2.3715 6 6 2.8974 3.1178 -1.1867 7 6 3.3094 3.6917 0.0082 8 6 3.9926 5.0348 -0.0048 9 6 4.1046 5.5361 -1.4461 10 6 3.1751 6.0309 0.8200 11 6 5.3925 4.9009 0.5982 12 6 3.0965 3.0527 1.1950 13 6 2.4646 1.7946 1.2142 14 6 2.2472 1.1262 2.4387 15 1 1.4020 0.4630 2.5492 16 6 3.1267 1.3232 3.5090 17 7 4.3605 1.6959 3.2820 18 14 2.5397 1.0541 5.2618 19 1 3.6545 1.3262 6.2044 20 1 1.4100 1.9731 5.5521 21 1 2.0883 -0.3515 5.4224 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 0.9681 1.5695 -2.6328 26 1 3.0687 3.6377 -2.1177 27 1 3.1075 5.6314 -1.8760 28 1 4.5991 6.5074 -1.4555 29 1 4.6872 4.8264 -2.0333 30 1 3.0958 5.6736 1.8467 31 1 3.6691 7.0025 0.8102 32 1 2.1780 6.1263 0.3904 33 1 5.9748 4.1912 0.0105 34 1 5.8867 5.8722 0.5883 35 1 5.3131 4.5436 1.6249 36 1 3.4170 3.5101 2.1194 37 1 4.6892 1.7562 2.3714 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258071064.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:41 Heat of formation + Delta-G solvation = -105.134683 kcal Electronic energy + Delta-G solvation = -19109.105479 eV Core-core repulsion = 16236.117826 eV Total energy + Delta-G solvation = -2872.987653 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.03291 -39.04649 -37.98839 -36.77479 -34.70411 -31.03238 -29.88293 -28.54615 -28.09720 -27.55004 -26.43495 -23.24003 -22.92856 -20.83255 -19.27555 -18.48867 -17.93987 -17.19373 -16.59837 -15.97044 -15.80532 -15.49907 -15.05333 -15.02158 -14.63921 -14.53605 -14.27275 -13.52518 -13.32376 -13.07831 -12.84279 -12.66959 -12.62531 -12.55423 -12.21525 -12.08453 -12.01005 -11.86168 -11.64695 -11.40088 -11.16990 -10.92676 -10.33508 -9.48372 -9.30410 -8.98536 -6.46506 0.65344 0.77831 1.48618 1.59725 1.77370 2.31420 2.56789 3.08365 3.38658 3.49895 3.87702 4.03264 4.18032 4.39445 4.50619 4.54334 4.63278 4.68072 4.75325 4.77396 4.78420 4.90517 5.00447 5.02847 5.10908 5.14490 5.20942 5.29616 5.46257 5.47001 5.52736 5.73548 5.76863 5.96353 6.13788 6.19269 6.54029 6.78584 6.83695 7.26520 8.02612 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.015586 B = 0.010798 C = 0.006955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.041477 B = 2592.448874 C = 4024.675182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.342 6.342 3 C -0.080 4.080 4 C 0.110 3.890 5 O -0.505 6.505 6 C -0.256 4.256 7 C -0.029 4.029 8 C -0.030 4.030 9 C -0.131 4.131 10 C -0.129 4.129 11 C -0.131 4.131 12 C -0.208 4.208 13 C 0.065 3.935 14 C -0.537 4.537 15 H 0.066 0.934 16 C 0.006 3.994 17 N -0.811 5.811 18 Si 1.113 2.887 19 H -0.268 1.268 20 H -0.261 1.261 21 H -0.263 1.263 22 H 0.102 0.898 23 H 0.026 0.974 24 H 0.045 0.955 25 H 0.392 0.608 26 H 0.132 0.868 27 H 0.058 0.942 28 H 0.076 0.924 29 H 0.050 0.950 30 H 0.037 0.963 31 H 0.079 0.921 32 H 0.053 0.947 33 H 0.043 0.957 34 H 0.080 0.920 35 H 0.036 0.964 36 H 0.096 0.904 37 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.658 6.801 -3.839 8.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.259 6.259 3 C -0.125 4.125 4 C 0.066 3.934 5 O -0.316 6.316 6 C -0.276 4.276 7 C -0.029 4.029 8 C -0.030 4.030 9 C -0.188 4.188 10 C -0.186 4.186 11 C -0.188 4.188 12 C -0.227 4.227 13 C 0.062 3.938 14 C -0.565 4.565 15 H 0.084 0.916 16 C -0.211 4.211 17 N -0.433 5.433 18 Si 0.930 3.070 19 H -0.193 1.193 20 H -0.185 1.185 21 H -0.188 1.188 22 H 0.121 0.879 23 H 0.045 0.955 24 H 0.064 0.936 25 H 0.249 0.751 26 H 0.150 0.850 27 H 0.078 0.922 28 H 0.095 0.905 29 H 0.070 0.930 30 H 0.056 0.944 31 H 0.098 0.902 32 H 0.072 0.928 33 H 0.062 0.938 34 H 0.099 0.901 35 H 0.055 0.945 36 H 0.114 0.886 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.486 6.496 -2.278 7.319 hybrid contribution -1.144 -0.264 -1.684 2.053 sum -3.630 6.233 -3.962 8.229 Atomic orbital electron populations 1.22982 0.80834 1.03033 0.99469 1.85959 1.19624 1.26063 1.94220 1.19371 1.11170 0.90147 0.91784 1.18770 0.99082 0.91873 0.83674 1.84753 1.36402 1.73702 1.36784 1.20833 1.12126 0.96269 0.98345 1.19399 0.95807 0.95750 0.91945 1.19552 0.94786 0.91179 0.97458 1.21847 1.01958 1.01128 0.93829 1.21800 0.99662 0.98509 0.98667 1.21814 0.95291 1.01984 0.99707 1.20572 1.09611 0.95473 0.97084 1.18164 0.91609 0.91656 0.92376 1.20486 1.12509 1.25876 0.97638 0.91606 1.28355 0.92435 0.90512 1.09752 1.70580 1.15321 1.30936 1.26483 0.83068 0.76681 0.78609 0.68678 1.19276 1.18519 1.18762 0.87927 0.95478 0.93603 0.75133 0.84987 0.92248 0.90546 0.93050 0.94400 0.90182 0.92807 0.93757 0.90110 0.94526 0.88639 0.90641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.19 11.13 113.37 1.26 2.45 16 2 O -0.34 -17.05 9.55 -76.69 -0.73 -17.79 16 3 C -0.08 -4.13 5.77 23.15 0.13 -4.00 16 4 C 0.11 5.09 6.71 22.53 0.15 5.24 16 5 O -0.51 -20.16 13.29 -79.82 -1.06 -21.22 16 6 C -0.26 -10.90 8.91 22.51 0.20 -10.70 16 7 C -0.03 -1.23 4.74 -20.14 -0.10 -1.32 16 8 C -0.03 -0.99 0.85 -52.92 -0.04 -1.04 16 9 C -0.13 -3.53 7.12 71.98 0.51 -3.02 16 10 C -0.13 -3.92 8.28 71.98 0.60 -3.33 16 11 C -0.13 -4.32 8.28 71.99 0.60 -3.73 16 12 C -0.21 -10.40 6.57 22.48 0.15 -10.26 16 13 C 0.07 3.55 5.21 -21.21 -0.11 3.44 16 14 C -0.54 -29.70 8.59 23.40 0.20 -29.50 16 15 H 0.07 3.65 7.79 -2.91 -0.02 3.63 16 16 C 0.01 0.30 4.92 85.24 0.42 0.72 16 17 N -0.81 -44.15 12.47 21.83 0.27 -43.88 16 18 Si 1.11 43.87 30.00 68.60 2.06 45.93 16 19 H -0.27 -10.28 7.11 99.48 0.71 -9.57 16 20 H -0.26 -9.59 7.11 99.48 0.71 -8.88 16 21 H -0.26 -9.75 7.11 99.48 0.71 -9.05 16 22 H 0.10 3.21 8.14 -2.39 -0.02 3.19 16 23 H 0.03 1.05 8.14 -2.38 -0.02 1.03 16 24 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 25 H 0.39 11.35 9.06 -74.06 -0.67 10.68 16 26 H 0.13 4.87 5.84 -2.91 -0.02 4.86 16 27 H 0.06 1.55 7.49 -2.39 -0.02 1.53 16 28 H 0.08 1.64 8.14 -2.39 -0.02 1.63 16 29 H 0.05 1.44 7.50 -2.39 -0.02 1.42 16 30 H 0.04 1.29 7.33 -2.39 -0.02 1.27 16 31 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.04 1.38 7.36 -2.39 -0.02 1.36 16 36 H 0.10 4.98 5.75 -2.91 -0.02 4.97 16 37 H 0.28 16.12 6.84 -92.70 -0.63 15.49 16 Total: -1.00 -64.96 303.82 5.04 -59.92 By element: Atomic # 1 Polarization: 31.54 SS G_CDS: 0.53 Total: 32.07 kcal Atomic # 6 Polarization: -59.00 SS G_CDS: 3.97 Total: -55.03 kcal Atomic # 7 Polarization: -44.15 SS G_CDS: 0.27 Total: -43.88 kcal Atomic # 8 Polarization: -37.21 SS G_CDS: -1.79 Total: -39.01 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.06 Total: 45.93 kcal Total: -64.96 5.04 -59.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258071064.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.215 kcal (2) G-P(sol) polarization free energy of solvation -64.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds