Wall clock time and date at job start Mon Mar 30 2020 06:06:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35692 * 117.00540 * 2 1 4 4 C 1.38415 * 120.14821 * 359.97438 * 3 2 1 5 5 C 1.38234 * 120.22762 * 179.97438 * 4 3 2 6 6 C 1.50702 * 119.73228 * 179.97438 * 5 4 3 7 7 C 1.53000 * 109.46933 * 0.02562 * 6 5 4 8 8 C 1.53002 * 109.46980 * 119.99692 * 6 5 4 9 9 C 1.52996 * 109.47310 * 240.00014 * 6 5 4 10 10 C 1.39331 * 120.53683 * 0.02562 * 5 4 3 11 11 O 1.35952 * 119.85230 * 179.97438 * 10 5 4 12 12 C 1.37900 * 120.29656 * 0.02562 * 10 5 4 13 13 C 1.40692 * 119.76033 * 359.69552 * 12 10 5 14 14 C 1.41147 * 120.26033 * 180.30053 * 13 12 10 15 15 H 1.07993 * 120.00097 * 150.27583 * 14 13 12 16 16 C 1.39921 * 119.99567 * 330.27176 * 14 13 12 17 17 N 1.30868 * 119.99495 * 161.74851 * 16 14 13 18 18 Si 1.86795 * 120.00182 * 341.75142 * 16 14 13 19 19 H 1.48500 * 109.47477 * 95.41816 * 18 16 14 20 20 H 1.48502 * 109.47215 * 215.41501 * 18 16 14 21 21 H 1.48502 * 109.47431 * 335.41467 * 18 16 14 22 22 H 1.08994 * 109.47562 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47027 * 60.00220 * 1 2 3 24 24 H 1.09004 * 109.47248 * 300.00330 * 1 2 3 25 25 H 1.08004 * 119.88546 * 359.95880 * 4 3 2 26 26 H 1.09003 * 109.47312 * 59.99773 * 7 6 5 27 27 H 1.09001 * 109.47502 * 179.97438 * 7 6 5 28 28 H 1.08998 * 109.46999 * 299.99890 * 7 6 5 29 29 H 1.08997 * 109.46819 * 60.00468 * 8 6 5 30 30 H 1.09001 * 109.47024 * 179.97438 * 8 6 5 31 31 H 1.09003 * 109.47411 * 300.00316 * 8 6 5 32 32 H 1.08998 * 109.46943 * 59.99913 * 9 6 5 33 33 H 1.09001 * 109.46732 * 179.97438 * 9 6 5 34 34 H 1.08997 * 109.47299 * 300.00028 * 9 6 5 35 35 H 0.96700 * 114.00006 * 90.00115 * 11 10 5 36 36 H 1.08000 * 120.11429 * 180.02562 * 12 10 5 37 37 H 0.97007 * 119.99996 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2090 0.0000 4 6 1.2944 2.3718 -0.0005 5 6 1.9203 3.6043 0.0000 6 6 1.0920 4.8633 -0.0012 7 6 -0.3933 4.4965 -0.0022 8 6 1.4128 5.6859 1.2484 9 6 1.4157 5.6856 -1.2501 10 6 3.3109 3.6921 0.0005 11 8 3.9120 4.9115 0.0005 12 6 4.0802 2.5476 0.0000 13 6 3.4561 1.2867 0.0054 14 6 4.2332 0.1084 0.0113 15 1 3.8523 -0.7874 0.4789 16 6 5.4972 0.1011 -0.5887 17 7 6.3580 -0.8382 -0.2897 18 14 5.9560 1.4321 -1.8165 19 1 6.6941 2.5157 -1.1192 20 1 6.8165 0.8509 -2.8781 21 1 4.7222 1.9878 -2.4283 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 0.5139 0.8900 25 1 0.2158 2.3160 -0.0016 26 1 -0.6236 3.9108 0.8878 27 1 -0.9925 5.4070 -0.0026 28 1 -0.6221 3.9102 -0.8921 29 1 2.4709 5.9472 1.2495 30 1 0.8140 6.5967 1.2473 31 1 1.1822 5.1001 2.1382 32 1 1.1872 5.0995 -2.1403 33 1 0.8162 6.5959 -1.2511 34 1 2.4739 5.9469 -1.2490 35 1 4.0856 5.2644 0.8839 36 1 5.1578 2.6190 0.0009 37 1 7.2342 -0.8435 -0.7060 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258129685.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:06:09 Heat of formation + Delta-G solvation = -74.178639 kcal Electronic energy + Delta-G solvation = -19173.091734 eV Core-core repulsion = 16301.446436 eV Total energy + Delta-G solvation = -2871.645298 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.53573 -37.80935 -35.84716 -35.08069 -33.09555 -30.05821 -28.26081 -27.17421 -26.81354 -26.26222 -24.94922 -21.57900 -20.83486 -18.95050 -17.80339 -16.87362 -16.40190 -15.59390 -14.81892 -14.74074 -14.42420 -13.78720 -13.75310 -13.67722 -13.25763 -12.94836 -12.46406 -11.89381 -11.79737 -11.73708 -11.49212 -11.29707 -11.21492 -11.02157 -10.82196 -10.66609 -10.56615 -10.48355 -10.02343 -9.83086 -9.61198 -9.30343 -8.94324 -7.68044 -7.00245 -6.93400 -4.37683 2.46058 2.52107 3.16147 3.23134 3.37665 4.02183 4.35110 4.36925 4.99051 5.25309 5.28952 5.41889 5.54550 5.66581 5.73322 5.84792 5.89058 5.93299 5.98083 6.00988 6.12702 6.23860 6.27609 6.38740 6.40696 6.53202 6.72276 6.77518 6.88045 6.95739 7.11200 7.31211 7.41071 7.73498 7.84018 8.19825 8.36059 8.53330 8.78158 8.85104 10.08389 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.021093 B = 0.009615 C = 0.007235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.106440 B = 2911.499973 C = 3869.369600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.307 6.307 3 C 0.026 3.974 4 C -0.159 4.159 5 C -0.188 4.188 6 C -0.004 4.004 7 C -0.137 4.137 8 C -0.137 4.137 9 C -0.137 4.137 10 C 0.120 3.880 11 O -0.504 6.504 12 C -0.245 4.245 13 C 0.088 3.912 14 C -0.427 4.427 15 H 0.096 0.904 16 C 0.083 3.917 17 N -0.805 5.805 18 Si 0.910 3.090 19 H -0.269 1.269 20 H -0.291 1.291 21 H -0.245 1.245 22 H 0.084 0.916 23 H 0.041 0.959 24 H 0.040 0.960 25 H 0.111 0.889 26 H 0.052 0.948 27 H 0.045 0.955 28 H 0.052 0.948 29 H 0.056 0.944 30 H 0.045 0.955 31 H 0.049 0.951 32 H 0.046 0.954 33 H 0.039 0.961 34 H 0.071 0.929 35 H 0.369 0.631 36 H 0.112 0.888 37 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.327 8.342 0.748 11.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.221 6.221 3 C -0.019 4.019 4 C -0.178 4.178 5 C -0.190 4.190 6 C -0.004 4.004 7 C -0.194 4.194 8 C -0.194 4.194 9 C -0.194 4.194 10 C 0.076 3.924 11 O -0.314 6.314 12 C -0.265 4.265 13 C 0.085 3.915 14 C -0.455 4.455 15 H 0.114 0.886 16 C -0.136 4.136 17 N -0.430 5.430 18 Si 0.737 3.263 19 H -0.195 1.195 20 H -0.219 1.219 21 H -0.168 1.168 22 H 0.103 0.897 23 H 0.060 0.940 24 H 0.059 0.941 25 H 0.129 0.871 26 H 0.071 0.929 27 H 0.065 0.935 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.058 0.942 34 H 0.090 0.910 35 H 0.224 0.776 36 H 0.130 0.870 37 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -8.029 7.899 0.127 11.264 hybrid contribution 0.150 0.617 -0.007 0.635 sum -7.879 8.516 0.120 11.602 Atomic orbital electron populations 1.22782 0.81451 1.02088 0.99974 1.86026 1.18403 1.27746 1.89895 1.19156 0.91987 0.82979 1.07759 1.20617 0.98153 0.91580 1.07417 1.19004 0.91872 0.92962 1.15163 1.19029 0.93373 0.93073 0.94900 1.21907 0.95768 1.00397 1.01369 1.21888 1.01409 0.98686 0.97439 1.21918 1.02512 0.98023 0.96982 1.17882 0.89539 0.83230 1.01745 1.84805 1.81230 1.33157 1.32177 1.20984 0.98512 0.91339 1.15696 1.16961 0.88512 0.92950 0.93103 1.19334 0.97970 0.97815 1.30386 0.88559 1.26165 0.94841 0.96192 0.96399 1.69713 1.05837 1.31836 1.35575 0.86314 0.79944 0.79982 0.80074 1.19546 1.21864 1.16783 0.89738 0.94031 0.94097 0.87098 0.92906 0.93545 0.92865 0.92473 0.93624 0.93181 0.93520 0.94199 0.90977 0.77628 0.87044 0.90436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 9.81 101.05 0.99 1.53 16 2 O -0.31 -6.90 9.84 -18.78 -0.18 -7.09 16 3 C 0.03 0.61 6.72 -38.35 -0.26 0.35 16 4 C -0.16 -3.30 7.95 -39.52 -0.31 -3.61 16 5 C -0.19 -3.79 4.79 -104.22 -0.50 -4.29 16 6 C 0.00 -0.06 0.75 -155.66 -0.12 -0.18 16 7 C -0.14 -1.96 7.12 37.16 0.26 -1.70 16 8 C -0.14 -1.95 8.25 37.16 0.31 -1.64 16 9 C -0.14 -2.18 8.25 37.16 0.31 -1.88 16 10 C 0.12 2.60 6.28 -39.30 -0.25 2.35 16 11 O -0.50 -9.46 10.01 -19.59 -0.20 -9.65 16 12 C -0.25 -6.00 7.09 -38.78 -0.27 -6.27 16 13 C 0.09 2.28 5.12 -106.70 -0.55 1.74 16 14 C -0.43 -11.85 9.18 -37.85 -0.35 -12.20 16 15 H 0.10 2.84 7.90 -52.49 -0.41 2.43 16 16 C 0.08 2.22 5.40 -17.33 -0.09 2.13 16 17 N -0.81 -21.79 13.93 55.55 0.77 -21.01 16 18 Si 0.91 21.63 24.51 -169.99 -4.17 17.47 16 19 H -0.27 -6.25 6.71 56.52 0.38 -5.87 16 20 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.24 -6.08 6.86 56.52 0.39 -5.69 16 22 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 23 H 0.04 0.63 7.66 -51.93 -0.40 0.23 16 24 H 0.04 0.61 7.66 -51.93 -0.40 0.21 16 25 H 0.11 2.00 4.07 -52.48 -0.21 1.78 16 26 H 0.05 0.74 7.50 -51.93 -0.39 0.35 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.05 0.77 7.50 -51.93 -0.39 0.38 16 29 H 0.06 0.78 5.28 -51.93 -0.27 0.51 16 30 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.07 1.23 6.10 -51.93 -0.32 0.91 16 35 H 0.37 5.35 7.55 45.56 0.34 5.70 16 36 H 0.11 2.76 4.72 -52.49 -0.25 2.51 16 37 H 0.29 6.98 8.30 -40.82 -0.34 6.64 16 LS Contribution 288.78 15.07 4.35 4.35 Total: -1.00 -29.32 288.78 -4.65 -33.98 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -4.40 Total: 5.61 kcal Atomic # 6 Polarization: -22.83 SS G_CDS: -0.83 Total: -23.65 kcal Atomic # 7 Polarization: -21.79 SS G_CDS: 0.77 Total: -21.01 kcal Atomic # 8 Polarization: -16.36 SS G_CDS: -0.38 Total: -16.74 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.17 Total: 17.47 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -29.32 -4.65 -33.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258129685.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.202 kcal (2) G-P(sol) polarization free energy of solvation -29.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds