Wall clock time and date at job start Mon Mar 30 2020 06:06:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35692 * 117.00540 * 2 1 4 4 C 1.38415 * 120.14821 * 359.97438 * 3 2 1 5 5 C 1.38234 * 120.22762 * 179.97438 * 4 3 2 6 6 C 1.50702 * 119.73228 * 179.97438 * 5 4 3 7 7 C 1.53000 * 109.46933 * 0.02562 * 6 5 4 8 8 C 1.53002 * 109.46980 * 119.99692 * 6 5 4 9 9 C 1.52996 * 109.47310 * 240.00014 * 6 5 4 10 10 C 1.39331 * 120.53683 * 0.02562 * 5 4 3 11 11 O 1.35952 * 119.85230 * 179.97438 * 10 5 4 12 12 C 1.37900 * 120.29656 * 0.02562 * 10 5 4 13 13 C 1.40692 * 119.76033 * 359.69552 * 12 10 5 14 14 C 1.41147 * 120.26033 * 180.30053 * 13 12 10 15 15 H 1.07993 * 120.00097 * 150.27583 * 14 13 12 16 16 C 1.39921 * 119.99567 * 330.27176 * 14 13 12 17 17 N 1.30868 * 119.99495 * 161.74851 * 16 14 13 18 18 Si 1.86795 * 120.00182 * 341.75142 * 16 14 13 19 19 H 1.48500 * 109.47477 * 95.41816 * 18 16 14 20 20 H 1.48502 * 109.47215 * 215.41501 * 18 16 14 21 21 H 1.48502 * 109.47431 * 335.41467 * 18 16 14 22 22 H 1.08994 * 109.47562 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47027 * 60.00220 * 1 2 3 24 24 H 1.09004 * 109.47248 * 300.00330 * 1 2 3 25 25 H 1.08004 * 119.88546 * 359.95880 * 4 3 2 26 26 H 1.09003 * 109.47312 * 59.99773 * 7 6 5 27 27 H 1.09001 * 109.47502 * 179.97438 * 7 6 5 28 28 H 1.08998 * 109.46999 * 299.99890 * 7 6 5 29 29 H 1.08997 * 109.46819 * 60.00468 * 8 6 5 30 30 H 1.09001 * 109.47024 * 179.97438 * 8 6 5 31 31 H 1.09003 * 109.47411 * 300.00316 * 8 6 5 32 32 H 1.08998 * 109.46943 * 59.99913 * 9 6 5 33 33 H 1.09001 * 109.46732 * 179.97438 * 9 6 5 34 34 H 1.08997 * 109.47299 * 300.00028 * 9 6 5 35 35 H 0.96700 * 114.00006 * 90.00115 * 11 10 5 36 36 H 1.08000 * 120.11429 * 180.02562 * 12 10 5 37 37 H 0.97007 * 119.99996 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2090 0.0000 4 6 1.2944 2.3718 -0.0005 5 6 1.9203 3.6043 0.0000 6 6 1.0920 4.8633 -0.0012 7 6 -0.3933 4.4965 -0.0022 8 6 1.4128 5.6859 1.2484 9 6 1.4157 5.6856 -1.2501 10 6 3.3109 3.6921 0.0005 11 8 3.9120 4.9115 0.0005 12 6 4.0802 2.5476 0.0000 13 6 3.4561 1.2867 0.0054 14 6 4.2332 0.1084 0.0113 15 1 3.8523 -0.7874 0.4789 16 6 5.4972 0.1011 -0.5887 17 7 6.3580 -0.8382 -0.2897 18 14 5.9560 1.4321 -1.8165 19 1 6.6941 2.5157 -1.1192 20 1 6.8165 0.8509 -2.8781 21 1 4.7222 1.9878 -2.4283 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 0.5139 0.8900 25 1 0.2158 2.3160 -0.0016 26 1 -0.6236 3.9108 0.8878 27 1 -0.9925 5.4070 -0.0026 28 1 -0.6221 3.9102 -0.8921 29 1 2.4709 5.9472 1.2495 30 1 0.8140 6.5967 1.2473 31 1 1.1822 5.1001 2.1382 32 1 1.1872 5.0995 -2.1403 33 1 0.8162 6.5959 -1.2511 34 1 2.4739 5.9469 -1.2490 35 1 4.0856 5.2644 0.8839 36 1 5.1578 2.6190 0.0009 37 1 7.2342 -0.8435 -0.7060 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258129685.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:06:08 Heat of formation + Delta-G solvation = -94.148862 kcal Electronic energy + Delta-G solvation = -19173.957708 eV Core-core repulsion = 16301.446436 eV Total energy + Delta-G solvation = -2872.511272 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.18678 -39.40501 -37.27094 -36.83191 -34.94478 -31.81236 -29.93270 -28.46671 -27.97697 -27.66533 -26.71436 -23.33465 -22.52280 -20.39433 -19.63663 -18.54593 -18.06218 -17.25309 -16.55212 -16.35053 -15.95827 -15.43189 -15.10306 -14.95598 -14.84798 -14.68677 -14.05184 -13.55693 -13.26572 -12.94872 -12.90020 -12.83815 -12.77909 -12.43380 -12.36921 -12.22967 -11.99379 -11.82922 -11.74862 -11.40935 -11.31290 -11.07166 -10.59341 -9.49360 -8.90365 -8.76259 -6.38580 0.67448 0.71483 1.23840 1.33714 1.44852 2.09683 2.51262 2.81654 3.26638 3.63817 3.93557 4.09819 4.25924 4.28930 4.40844 4.47855 4.61162 4.66289 4.74035 4.86450 4.89530 4.92302 5.01268 5.07242 5.14069 5.16097 5.21790 5.24444 5.29220 5.53730 5.60583 5.62957 5.72612 5.99417 6.11331 6.21219 6.43701 6.77784 6.96022 7.15806 8.19057 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.021093 B = 0.009615 C = 0.007235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.106440 B = 2911.499973 C = 3869.369600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.339 6.339 3 C 0.016 3.984 4 C -0.158 4.158 5 C -0.163 4.163 6 C -0.010 4.010 7 C -0.137 4.137 8 C -0.136 4.136 9 C -0.135 4.135 10 C 0.113 3.887 11 O -0.500 6.500 12 C -0.253 4.253 13 C 0.058 3.942 14 C -0.467 4.467 15 H 0.056 0.944 16 C 0.049 3.951 17 N -0.850 5.850 18 Si 0.964 3.036 19 H -0.261 1.261 20 H -0.276 1.276 21 H -0.263 1.263 22 H 0.109 0.891 23 H 0.056 0.944 24 H 0.058 0.942 25 H 0.145 0.855 26 H 0.055 0.945 27 H 0.073 0.927 28 H 0.049 0.951 29 H 0.058 0.942 30 H 0.072 0.928 31 H 0.047 0.953 32 H 0.034 0.966 33 H 0.069 0.931 34 H 0.058 0.942 35 H 0.391 0.609 36 H 0.102 0.898 37 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.741 11.598 0.566 15.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.254 6.254 3 C -0.029 4.029 4 C -0.176 4.176 5 C -0.165 4.165 6 C -0.010 4.010 7 C -0.194 4.194 8 C -0.193 4.193 9 C -0.192 4.192 10 C 0.068 3.932 11 O -0.312 6.312 12 C -0.273 4.273 13 C 0.056 3.944 14 C -0.496 4.496 15 H 0.074 0.926 16 C -0.164 4.164 17 N -0.477 5.477 18 Si 0.788 3.212 19 H -0.186 1.186 20 H -0.202 1.202 21 H -0.187 1.187 22 H 0.128 0.872 23 H 0.074 0.926 24 H 0.076 0.924 25 H 0.162 0.838 26 H 0.074 0.926 27 H 0.092 0.908 28 H 0.068 0.932 29 H 0.077 0.923 30 H 0.090 0.910 31 H 0.066 0.934 32 H 0.053 0.947 33 H 0.088 0.912 34 H 0.077 0.923 35 H 0.249 0.751 36 H 0.120 0.880 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -10.450 11.169 -0.037 15.295 hybrid contribution 0.603 -0.191 0.117 0.643 sum -9.848 10.977 0.080 14.747 Atomic orbital electron populations 1.23160 0.78198 1.04450 1.01372 1.85990 1.21873 1.27701 1.89847 1.19390 0.91741 0.84484 1.07282 1.21009 0.99773 0.90692 1.06164 1.19668 0.91860 0.94797 1.10186 1.19225 0.94110 0.91294 0.96396 1.21908 0.94296 1.01852 1.01392 1.21871 1.02146 0.99367 0.95911 1.21880 1.02269 0.99026 0.96030 1.17919 0.90175 0.83460 1.01602 1.84755 1.80988 1.31441 1.34057 1.21104 0.98494 0.92027 1.15657 1.17147 0.89935 0.92857 0.94500 1.19183 0.99562 0.97521 1.33384 0.92594 1.26694 0.94544 0.97886 0.97310 1.69737 1.06636 1.33767 1.37562 0.85511 0.78958 0.78153 0.78558 1.18629 1.20217 1.18742 0.87223 0.92572 0.92386 0.83804 0.92579 0.90835 0.93167 0.92288 0.90954 0.93362 0.94690 0.91177 0.92289 0.75120 0.87996 0.89681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.70 9.81 113.37 1.11 1.81 16 2 O -0.34 -15.46 9.84 -90.11 -0.89 -16.35 16 3 C 0.02 0.75 6.72 23.07 0.16 0.91 16 4 C -0.16 -6.20 7.95 22.31 0.18 -6.02 16 5 C -0.16 -6.12 4.79 -19.60 -0.09 -6.22 16 6 C -0.01 -0.29 0.75 -52.93 -0.04 -0.33 16 7 C -0.14 -3.21 7.12 71.98 0.51 -2.70 16 8 C -0.14 -3.20 8.25 71.98 0.59 -2.60 16 9 C -0.13 -3.71 8.25 71.98 0.59 -3.11 16 10 C 0.11 4.69 6.28 22.45 0.14 4.83 16 11 O -0.50 -17.42 10.01 -93.01 -0.93 -18.35 16 12 C -0.25 -12.44 7.09 22.79 0.16 -12.28 16 13 C 0.06 3.13 5.12 -21.21 -0.11 3.02 16 14 C -0.47 -27.67 9.18 23.39 0.21 -27.45 16 15 H 0.06 3.62 7.90 -2.91 -0.02 3.60 16 16 C 0.05 2.79 5.40 85.24 0.46 3.25 16 17 N -0.85 -48.61 13.93 21.82 0.30 -48.31 16 18 Si 0.96 46.09 24.51 68.60 1.68 47.77 16 19 H -0.26 -11.90 6.71 99.48 0.67 -11.24 16 20 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 21 H -0.26 -13.17 6.86 99.48 0.68 -12.49 16 22 H 0.11 2.75 8.14 -2.39 -0.02 2.73 16 23 H 0.06 1.54 7.66 -2.38 -0.02 1.52 16 24 H 0.06 1.56 7.66 -2.38 -0.02 1.54 16 25 H 0.14 4.65 4.07 -2.91 -0.01 4.63 16 26 H 0.06 1.28 7.50 -2.39 -0.02 1.27 16 27 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.05 1.21 7.50 -2.39 -0.02 1.19 16 29 H 0.06 1.35 5.28 -2.39 -0.01 1.34 16 30 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.06 1.79 6.10 -2.39 -0.01 1.77 16 35 H 0.39 10.09 7.55 -74.06 -0.56 9.53 16 36 H 0.10 5.12 4.72 -2.91 -0.01 5.11 16 37 H 0.29 15.03 8.30 -92.70 -0.77 14.27 16 Total: -1.00 -67.08 288.78 4.51 -62.56 By element: Atomic # 1 Polarization: 19.09 SS G_CDS: 0.46 Total: 19.55 kcal Atomic # 6 Polarization: -50.76 SS G_CDS: 3.88 Total: -46.88 kcal Atomic # 7 Polarization: -48.61 SS G_CDS: 0.30 Total: -48.31 kcal Atomic # 8 Polarization: -32.88 SS G_CDS: -1.82 Total: -34.70 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 1.68 Total: 47.77 kcal Total: -67.08 4.51 -62.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258129685.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.584 kcal (2) G-P(sol) polarization free energy of solvation -67.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds