Wall clock time and date at job start Mon Mar 30 2020 06:50:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35899 * 117.00040 * 2 1 4 4 C 1.38733 * 120.05651 * 179.97438 * 3 2 1 5 5 C 1.38142 * 119.94838 * 179.97438 * 4 3 2 6 6 C 1.38268 * 120.05388 * 0.02562 * 5 4 3 7 7 C 1.50698 * 119.94535 * 179.97438 * 6 5 4 8 8 H 1.09004 * 109.46831 * 0.02562 * 7 6 5 9 9 C 1.50703 * 109.46821 * 119.99930 * 7 6 5 10 10 H 1.07996 * 120.00339 * 5.53848 * 9 7 6 11 11 C 1.37884 * 119.99676 * 185.54018 * 9 7 6 12 12 N 1.31514 * 119.99776 * 355.22660 * 11 9 7 13 13 Si 1.86798 * 119.99883 * 175.22142 * 11 9 7 14 14 H 1.48505 * 109.47018 * 0.02562 * 13 11 9 15 15 H 1.48502 * 109.47032 * 120.00094 * 13 11 9 16 16 H 1.48499 * 109.47195 * 240.00282 * 13 11 9 17 17 C 1.53003 * 109.47160 * 239.99852 * 7 6 5 18 18 H 1.09001 * 109.46919 * 185.10178 * 17 7 6 19 19 C 1.52995 * 109.47010 * 65.10211 * 17 7 6 20 20 O 1.42897 * 109.47129 * 305.09848 * 17 7 6 21 21 C 1.42898 * 114.00507 * 270.00245 * 20 17 7 22 22 C 1.38271 * 120.11137 * 0.26860 * 6 5 4 23 23 C 1.38149 * 120.05442 * 359.45328 * 22 6 5 24 24 H 1.09001 * 109.47138 * 300.00043 * 1 2 3 25 25 H 1.09008 * 109.47061 * 59.99915 * 1 2 3 26 26 H 1.08992 * 109.47256 * 179.97438 * 1 2 3 27 27 H 1.08000 * 120.02692 * 359.96260 * 4 3 2 28 28 H 1.08004 * 119.97505 * 180.02562 * 5 4 3 29 29 H 0.97003 * 119.99775 * 179.97438 * 12 11 9 30 30 H 1.09008 * 109.47423 * 54.97886 * 19 17 7 31 31 H 1.08998 * 109.47417 * 294.98160 * 19 17 7 32 32 H 1.09000 * 109.47033 * 174.98106 * 19 17 7 33 33 H 1.09003 * 109.46777 * 300.00332 * 21 20 17 34 34 H 1.09003 * 109.47229 * 59.99511 * 21 20 17 35 35 H 1.08995 * 109.47256 * 180.02562 * 21 20 17 36 36 H 1.07994 * 119.97083 * 179.70324 * 22 6 5 37 37 H 1.07997 * 120.02986 * 180.27611 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4313 1.2848 0.0005 5 6 4.0562 2.5169 0.0000 6 6 3.3020 3.6758 -0.0005 7 6 3.9862 5.0185 -0.0005 8 1 5.0668 4.8756 -0.0005 9 6 3.5817 5.7883 -1.2314 10 1 2.8305 5.3880 -1.8961 11 6 4.1708 7.0037 -1.5088 12 7 5.0158 7.5355 -0.6528 13 14 3.7687 7.8948 -3.1006 14 1 2.7969 7.0917 -3.8855 15 1 3.1772 9.2210 -2.7896 16 1 5.0116 8.0802 -3.8917 17 6 3.5746 5.8006 1.2484 18 1 3.9966 6.8046 1.2038 19 6 4.0965 5.0829 2.4946 20 8 2.1494 5.8853 1.3092 21 6 1.6065 7.0311 0.6500 22 6 1.9211 3.6048 0.0051 23 6 1.2915 2.3751 -0.0002 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 4.0208 0.3799 0.0016 28 1 5.1346 2.5750 0.0000 29 1 5.4305 8.3904 -0.8482 30 1 5.1735 4.9390 2.4069 31 1 3.6069 4.1135 2.5875 32 1 3.8811 5.6848 3.3775 33 1 2.0024 7.9365 1.1101 34 1 1.8827 7.0087 -0.4042 35 1 0.5204 7.0224 0.7418 36 1 1.3343 4.5114 0.0095 37 1 0.2129 2.3202 -0.0003 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259333520.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:03 Heat of formation + Delta-G solvation = -64.078946 kcal Electronic energy + Delta-G solvation = -19042.307905 eV Core-core repulsion = 16171.100562 eV Total energy + Delta-G solvation = -2871.207343 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.57037 -37.94361 -36.23425 -33.28604 -31.46907 -30.33932 -29.32729 -27.52689 -26.21493 -25.25162 -23.20939 -21.90852 -21.10690 -19.33222 -17.57635 -16.52827 -15.85955 -15.36377 -15.34705 -14.58722 -14.51053 -13.92223 -13.66462 -13.28896 -13.13671 -12.76755 -12.36122 -12.07777 -11.79039 -11.66559 -11.57726 -11.15922 -11.07929 -10.93123 -10.62349 -10.49237 -10.20854 -10.08570 -9.85290 -9.45168 -9.13196 -8.63806 -8.25297 -8.08353 -7.21195 -6.12413 -4.12916 2.12251 2.28027 3.21243 3.31208 3.35474 3.69701 4.32384 4.63086 5.01706 5.18097 5.23395 5.32835 5.46403 5.61413 5.64135 6.00813 6.11729 6.22721 6.26376 6.35529 6.39012 6.43949 6.46933 6.62825 6.76014 6.92838 6.97490 7.04530 7.19733 7.21232 7.29176 7.42192 7.56597 7.80559 7.89076 8.01390 8.31482 8.51868 8.86872 9.45750 10.92836 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.024144 B = 0.007205 C = 0.006752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.452851 B = 3885.250481 C = 4145.708120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.328 6.328 3 C 0.092 3.908 4 C -0.160 4.160 5 C -0.097 4.097 6 C -0.061 4.061 7 C 0.060 3.940 8 H 0.043 0.957 9 C -0.498 4.498 10 H 0.060 0.940 11 C 0.061 3.939 12 N -0.890 5.890 13 Si 0.885 3.115 14 H -0.272 1.272 15 H -0.284 1.284 16 H -0.283 1.283 17 C 0.090 3.910 18 H 0.091 0.909 19 C -0.145 4.145 20 O -0.391 6.391 21 C 0.032 3.968 22 C -0.056 4.056 23 C -0.216 4.216 24 H 0.050 0.950 25 H 0.050 0.950 26 H 0.090 0.910 27 H 0.116 0.884 28 H 0.119 0.881 29 H 0.262 0.738 30 H 0.058 0.942 31 H 0.048 0.952 32 H 0.040 0.960 33 H 0.021 0.979 34 H 0.073 0.927 35 H 0.053 0.947 36 H 0.138 0.862 37 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.794 -7.035 2.611 9.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.243 6.243 3 C 0.048 3.952 4 C -0.178 4.178 5 C -0.115 4.115 6 C -0.061 4.061 7 C 0.042 3.958 8 H 0.061 0.939 9 C -0.536 4.536 10 H 0.078 0.922 11 C -0.140 4.140 12 N -0.529 5.529 13 Si 0.712 3.288 14 H -0.196 1.196 15 H -0.210 1.210 16 H -0.209 1.209 17 C 0.033 3.967 18 H 0.109 0.891 19 C -0.202 4.202 20 O -0.310 6.310 21 C -0.064 4.064 22 C -0.074 4.074 23 C -0.234 4.234 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.109 0.891 27 H 0.134 0.866 28 H 0.137 0.863 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.067 0.933 32 H 0.059 0.941 33 H 0.040 0.960 34 H 0.091 0.909 35 H 0.072 0.928 36 H 0.155 0.845 37 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -5.702 -7.202 2.726 9.582 hybrid contribution -0.256 0.911 -1.020 1.391 sum -5.958 -6.291 1.706 8.831 Atomic orbital electron populations 1.22894 0.79519 1.02805 1.01112 1.85975 1.20501 1.27955 1.89839 1.18894 0.92296 0.83558 1.00464 1.20213 0.91073 0.98108 1.08448 1.20934 0.99475 0.91294 0.99757 1.20321 0.93542 0.96155 0.96082 1.18358 0.95634 0.87533 0.94309 0.93899 1.21107 1.22185 1.03343 1.06941 0.92219 1.24960 0.95203 0.97331 0.96516 1.69868 1.29743 1.18449 1.34824 0.86638 0.78451 0.79603 0.84064 1.19607 1.20964 1.20858 1.22244 0.79728 1.01584 0.93157 0.89079 1.21885 1.00252 1.00286 0.97797 1.87639 1.22293 1.44619 1.76484 1.22780 0.95983 0.87721 0.99945 1.21209 0.95046 0.96504 0.94627 1.21219 0.99036 0.92886 1.10303 0.93100 0.93114 0.89133 0.86628 0.86315 0.92803 0.92290 0.93270 0.94132 0.96044 0.90908 0.92810 0.84475 0.86849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 9.81 101.05 0.99 1.37 16 2 O -0.33 -5.36 10.50 -19.42 -0.20 -5.57 16 3 C 0.09 1.67 6.69 -39.21 -0.26 1.41 16 4 C -0.16 -2.93 9.99 -39.43 -0.39 -3.32 16 5 C -0.10 -1.90 9.66 -39.61 -0.38 -2.28 16 6 C -0.06 -1.31 3.82 -104.60 -0.40 -1.71 16 7 C 0.06 1.43 1.81 -92.92 -0.17 1.26 16 8 H 0.04 1.09 7.87 -51.93 -0.41 0.68 16 9 C -0.50 -12.66 5.82 -34.44 -0.20 -12.86 16 10 H 0.06 1.56 7.54 -52.49 -0.40 1.16 16 11 C 0.06 1.57 4.72 -17.82 -0.08 1.48 16 12 N -0.89 -23.56 11.53 55.43 0.64 -22.92 16 13 Si 0.88 20.21 29.54 -169.99 -5.02 15.19 16 14 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 15 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 16 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 17 C 0.09 2.04 2.51 -26.73 -0.07 1.98 16 18 H 0.09 2.29 5.89 -51.93 -0.31 1.98 16 19 C -0.14 -2.87 9.29 37.16 0.35 -2.53 16 20 O -0.39 -8.55 7.35 -35.23 -0.26 -8.81 16 21 C 0.03 0.66 10.15 101.05 1.03 1.69 16 22 C -0.06 -1.16 8.10 -39.60 -0.32 -1.48 16 23 C -0.22 -3.97 9.04 -39.43 -0.36 -4.32 16 24 H 0.05 0.57 7.66 -51.93 -0.40 0.17 16 25 H 0.05 0.57 7.66 -51.92 -0.40 0.17 16 26 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 27 H 0.12 1.87 8.06 -52.49 -0.42 1.45 16 28 H 0.12 2.16 7.94 -52.48 -0.42 1.75 16 29 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 30 H 0.06 1.11 8.14 -51.92 -0.42 0.69 16 31 H 0.05 0.96 7.55 -51.93 -0.39 0.57 16 32 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.02 0.43 8.09 -51.93 -0.42 0.01 16 34 H 0.07 1.63 5.17 -51.93 -0.27 1.36 16 35 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.14 2.92 5.78 -52.49 -0.30 2.62 16 37 H 0.11 1.79 6.30 -52.49 -0.33 1.46 16 LS Contribution 298.03 15.07 4.49 4.49 Total: -1.00 -27.30 298.03 -5.91 -33.22 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -5.29 Total: 3.71 kcal Atomic # 6 Polarization: -19.04 SS G_CDS: -0.27 Total: -19.31 kcal Atomic # 7 Polarization: -23.56 SS G_CDS: 0.64 Total: -22.92 kcal Atomic # 8 Polarization: -13.91 SS G_CDS: -0.46 Total: -14.37 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -27.30 -5.91 -33.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259333520.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.863 kcal (2) G-P(sol) polarization free energy of solvation -27.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds