Wall clock time and date at job start Mon Mar 30 2020 06:50:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35899 * 117.00040 * 2 1 4 4 C 1.38733 * 120.05651 * 179.97438 * 3 2 1 5 5 C 1.38142 * 119.94838 * 179.97438 * 4 3 2 6 6 C 1.38268 * 120.05388 * 0.02562 * 5 4 3 7 7 C 1.50698 * 119.94535 * 179.97438 * 6 5 4 8 8 H 1.09004 * 109.46831 * 0.02562 * 7 6 5 9 9 C 1.50703 * 109.46821 * 119.99930 * 7 6 5 10 10 H 1.07996 * 120.00339 * 5.53848 * 9 7 6 11 11 C 1.37884 * 119.99676 * 185.54018 * 9 7 6 12 12 N 1.31514 * 119.99776 * 355.22660 * 11 9 7 13 13 Si 1.86798 * 119.99883 * 175.22142 * 11 9 7 14 14 H 1.48505 * 109.47018 * 0.02562 * 13 11 9 15 15 H 1.48502 * 109.47032 * 120.00094 * 13 11 9 16 16 H 1.48499 * 109.47195 * 240.00282 * 13 11 9 17 17 C 1.53003 * 109.47160 * 239.99852 * 7 6 5 18 18 H 1.09001 * 109.46919 * 185.10178 * 17 7 6 19 19 C 1.52995 * 109.47010 * 65.10211 * 17 7 6 20 20 O 1.42897 * 109.47129 * 305.09848 * 17 7 6 21 21 C 1.42898 * 114.00507 * 270.00245 * 20 17 7 22 22 C 1.38271 * 120.11137 * 0.26860 * 6 5 4 23 23 C 1.38149 * 120.05442 * 359.45328 * 22 6 5 24 24 H 1.09001 * 109.47138 * 300.00043 * 1 2 3 25 25 H 1.09008 * 109.47061 * 59.99915 * 1 2 3 26 26 H 1.08992 * 109.47256 * 179.97438 * 1 2 3 27 27 H 1.08000 * 120.02692 * 359.96260 * 4 3 2 28 28 H 1.08004 * 119.97505 * 180.02562 * 5 4 3 29 29 H 0.97003 * 119.99775 * 179.97438 * 12 11 9 30 30 H 1.09008 * 109.47423 * 54.97886 * 19 17 7 31 31 H 1.08998 * 109.47417 * 294.98160 * 19 17 7 32 32 H 1.09000 * 109.47033 * 174.98106 * 19 17 7 33 33 H 1.09003 * 109.46777 * 300.00332 * 21 20 17 34 34 H 1.09003 * 109.47229 * 59.99511 * 21 20 17 35 35 H 1.08995 * 109.47256 * 180.02562 * 21 20 17 36 36 H 1.07994 * 119.97083 * 179.70324 * 22 6 5 37 37 H 1.07997 * 120.02986 * 180.27611 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4313 1.2848 0.0005 5 6 4.0562 2.5169 0.0000 6 6 3.3020 3.6758 -0.0005 7 6 3.9862 5.0185 -0.0005 8 1 5.0668 4.8756 -0.0005 9 6 3.5817 5.7883 -1.2314 10 1 2.8305 5.3880 -1.8961 11 6 4.1708 7.0037 -1.5088 12 7 5.0158 7.5355 -0.6528 13 14 3.7687 7.8948 -3.1006 14 1 2.7969 7.0917 -3.8855 15 1 3.1772 9.2210 -2.7896 16 1 5.0116 8.0802 -3.8917 17 6 3.5746 5.8006 1.2484 18 1 3.9966 6.8046 1.2038 19 6 4.0965 5.0829 2.4946 20 8 2.1494 5.8853 1.3092 21 6 1.6065 7.0311 0.6500 22 6 1.9211 3.6048 0.0051 23 6 1.2915 2.3751 -0.0002 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 4.0208 0.3799 0.0016 28 1 5.1346 2.5750 0.0000 29 1 5.4305 8.3904 -0.8482 30 1 5.1735 4.9390 2.4069 31 1 3.6069 4.1135 2.5875 32 1 3.8811 5.6848 3.3775 33 1 2.0024 7.9365 1.1101 34 1 1.8827 7.0087 -0.4042 35 1 0.5204 7.0224 0.7418 36 1 1.3343 4.5114 0.0095 37 1 0.2129 2.3202 -0.0003 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259333520.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:03 Heat of formation + Delta-G solvation = -78.801548 kcal Electronic energy + Delta-G solvation = -19042.946325 eV Core-core repulsion = 16171.100562 eV Total energy + Delta-G solvation = -2871.845763 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.98237 -39.51347 -37.74703 -35.13132 -33.24290 -31.80457 -30.89113 -28.95267 -27.65442 -26.90046 -25.01004 -23.40781 -22.63964 -21.02582 -18.90491 -18.45765 -17.47006 -16.83173 -16.50644 -16.39346 -16.11853 -15.58700 -15.30624 -14.83797 -14.46353 -14.40076 -13.94212 -13.62952 -13.30091 -13.24748 -12.99407 -12.88741 -12.67778 -12.62045 -12.33458 -12.03155 -11.73603 -11.65879 -11.53563 -11.25762 -10.98371 -10.49447 -9.96044 -9.67473 -8.72986 -8.08183 -6.14153 0.63077 0.77726 1.37771 1.43399 1.52051 2.42716 2.52400 3.08263 3.20536 3.34292 4.11024 4.13568 4.41134 4.44964 4.46129 4.55760 4.68440 4.71786 4.75235 4.77864 4.80032 4.81226 4.95869 5.01996 5.20262 5.24609 5.30342 5.42975 5.44510 5.54613 5.66169 5.73658 5.85816 6.05482 6.19802 6.41374 6.64411 6.74088 6.90757 7.46369 8.95141 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.024144 B = 0.007205 C = 0.006752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.452851 B = 3885.250481 C = 4145.708120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.336 6.336 3 C 0.096 3.904 4 C -0.162 4.162 5 C -0.103 4.103 6 C -0.085 4.085 7 C 0.063 3.937 8 H 0.015 0.985 9 C -0.501 4.501 10 H 0.047 0.953 11 C 0.026 3.974 12 N -0.913 5.913 13 Si 0.935 3.065 14 H -0.271 1.271 15 H -0.278 1.278 16 H -0.284 1.284 17 C 0.094 3.906 18 H 0.063 0.937 19 C -0.136 4.136 20 O -0.391 6.391 21 C 0.034 3.966 22 C -0.069 4.069 23 C -0.214 4.214 24 H 0.059 0.941 25 H 0.057 0.943 26 H 0.122 0.878 27 H 0.138 0.862 28 H 0.125 0.875 29 H 0.262 0.738 30 H 0.062 0.938 31 H 0.050 0.950 32 H 0.054 0.946 33 H 0.017 0.983 34 H 0.050 0.950 35 H 0.087 0.913 36 H 0.126 0.874 37 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.215 -8.399 2.686 11.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.251 6.251 3 C 0.052 3.948 4 C -0.180 4.180 5 C -0.121 4.121 6 C -0.085 4.085 7 C 0.045 3.955 8 H 0.033 0.967 9 C -0.539 4.539 10 H 0.065 0.935 11 C -0.174 4.174 12 N -0.552 5.552 13 Si 0.762 3.238 14 H -0.196 1.196 15 H -0.204 1.204 16 H -0.210 1.210 17 C 0.036 3.964 18 H 0.081 0.919 19 C -0.193 4.193 20 O -0.311 6.311 21 C -0.063 4.063 22 C -0.087 4.087 23 C -0.232 4.232 24 H 0.077 0.923 25 H 0.075 0.925 26 H 0.140 0.860 27 H 0.156 0.844 28 H 0.143 0.857 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.036 0.964 34 H 0.069 0.931 35 H 0.105 0.895 36 H 0.144 0.856 37 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -7.139 -8.574 2.802 11.504 hybrid contribution 0.105 1.231 -1.047 1.620 sum -7.034 -7.343 1.755 10.319 Atomic orbital electron populations 1.23262 0.77029 1.05254 1.01816 1.85979 1.23033 1.26710 1.89374 1.19007 0.92456 0.84299 0.99055 1.20447 0.91721 0.98264 1.07593 1.21025 0.99862 0.91414 0.99810 1.20181 0.94190 0.95572 0.98544 1.18199 0.94066 0.89035 0.94223 0.96696 1.21214 1.21705 1.03577 1.07437 0.93482 1.25488 0.95231 0.97923 0.98709 1.69971 1.30575 1.18690 1.35996 0.85851 0.78030 0.78780 0.81173 1.19557 1.20385 1.20993 1.22076 0.80106 1.00120 0.94059 0.91924 1.21787 1.00343 1.00198 0.96990 1.87636 1.21743 1.45214 1.76458 1.22796 0.97885 0.87210 0.98383 1.21136 0.94614 0.97168 0.95751 1.21408 1.00444 0.92007 1.09349 0.92264 0.92452 0.85996 0.84440 0.85744 0.92894 0.91941 0.93057 0.92707 0.96409 0.93100 0.89471 0.85599 0.84242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 9.81 113.37 1.11 1.53 16 2 O -0.34 -9.93 10.50 -92.42 -0.97 -10.90 16 3 C 0.10 3.29 6.69 22.51 0.15 3.44 16 4 C -0.16 -5.64 9.99 22.37 0.22 -5.42 16 5 C -0.10 -4.01 9.66 22.25 0.22 -3.79 16 6 C -0.08 -3.66 3.82 -19.85 -0.08 -3.74 16 7 C 0.06 3.07 1.81 -12.28 -0.02 3.05 16 8 H 0.01 0.79 7.87 -2.39 -0.02 0.77 16 9 C -0.50 -26.05 5.82 25.60 0.15 -25.90 16 10 H 0.05 2.51 7.54 -2.91 -0.02 2.49 16 11 C 0.03 1.33 4.72 84.66 0.40 1.73 16 12 N -0.91 -49.39 11.53 21.45 0.25 -49.14 16 13 Si 0.94 41.86 29.54 68.60 2.03 43.88 16 14 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 15 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 16 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 17 C 0.09 4.32 2.51 30.59 0.08 4.40 16 18 H 0.06 3.23 5.89 -2.39 -0.01 3.22 16 19 C -0.14 -5.36 9.29 71.98 0.67 -4.69 16 20 O -0.39 -17.07 7.35 -148.98 -1.09 -18.16 16 21 C 0.03 1.37 10.15 113.37 1.15 2.52 16 22 C -0.07 -2.80 8.10 22.26 0.18 -2.62 16 23 C -0.21 -7.42 9.04 22.37 0.20 -7.22 16 24 H 0.06 1.11 7.66 -2.39 -0.02 1.09 16 25 H 0.06 1.09 7.66 -2.38 -0.02 1.07 16 26 H 0.12 1.68 8.14 -2.39 -0.02 1.67 16 27 H 0.14 4.11 8.06 -2.91 -0.02 4.09 16 28 H 0.12 4.55 7.94 -2.91 -0.02 4.53 16 29 H 0.26 13.60 8.31 -92.71 -0.77 12.83 16 30 H 0.06 2.37 8.14 -2.38 -0.02 2.35 16 31 H 0.05 1.98 7.55 -2.39 -0.02 1.96 16 32 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.02 0.71 8.09 -2.39 -0.02 0.69 16 34 H 0.05 2.30 5.17 -2.39 -0.01 2.28 16 35 H 0.09 2.90 8.14 -2.39 -0.02 2.88 16 36 H 0.13 5.34 5.78 -2.91 -0.02 5.33 16 37 H 0.14 4.00 6.30 -2.91 -0.02 3.98 16 Total: -1.00 -58.25 298.03 5.69 -52.56 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: 1.05 Total: 18.47 kcal Atomic # 6 Polarization: -41.14 SS G_CDS: 4.43 Total: -36.71 kcal Atomic # 7 Polarization: -49.39 SS G_CDS: 0.25 Total: -49.14 kcal Atomic # 8 Polarization: -27.00 SS G_CDS: -2.06 Total: -29.06 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 2.03 Total: 43.88 kcal Total: -58.25 5.69 -52.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259333520.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.240 kcal (2) G-P(sol) polarization free energy of solvation -58.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds