Wall clock time and date at job start Mon Mar 30 2020 06:50:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35898 * 117.00687 * 2 1 4 4 C 1.38730 * 120.05882 * 179.97438 * 3 2 1 5 5 C 1.38141 * 119.94342 * 179.97438 * 4 3 2 6 6 C 1.38270 * 120.05699 * 0.02562 * 5 4 3 7 7 C 1.50697 * 119.94458 * 179.97438 * 6 5 4 8 8 H 1.08994 * 109.47158 * 0.02562 * 7 6 5 9 9 C 1.50695 * 109.47241 * 240.00186 * 7 6 5 10 10 H 1.08000 * 120.00625 * 272.93076 * 9 7 6 11 11 C 1.37882 * 119.99842 * 92.93211 * 9 7 6 12 12 N 1.31514 * 120.00019 * 353.16824 * 11 9 7 13 13 Si 1.86800 * 119.99768 * 173.43664 * 11 9 7 14 14 H 1.48498 * 109.47404 * 269.72550 * 13 11 9 15 15 H 1.48495 * 109.47255 * 29.73028 * 13 11 9 16 16 H 1.48507 * 109.46933 * 149.72750 * 13 11 9 17 17 C 1.53003 * 109.47085 * 120.00233 * 7 6 5 18 18 H 1.09002 * 109.46659 * 54.23550 * 17 7 6 19 19 C 1.52998 * 109.47179 * 294.23956 * 17 7 6 20 20 O 1.42898 * 109.47322 * 174.23711 * 17 7 6 21 21 C 1.42900 * 114.00030 * 250.77809 * 20 17 7 22 22 C 1.38264 * 120.11235 * 0.27746 * 6 5 4 23 23 C 1.38150 * 120.05448 * 359.44818 * 22 6 5 24 24 H 1.08996 * 109.47294 * 300.00798 * 1 2 3 25 25 H 1.09003 * 109.46408 * 60.00090 * 1 2 3 26 26 H 1.09000 * 109.47405 * 179.97438 * 1 2 3 27 27 H 1.07994 * 120.02923 * 359.96121 * 4 3 2 28 28 H 1.07994 * 119.97450 * 180.02562 * 5 4 3 29 29 H 0.97000 * 119.99985 * 354.05520 * 12 11 9 30 30 H 1.09006 * 109.46881 * 59.99866 * 19 17 7 31 31 H 1.09003 * 109.47142 * 179.97438 * 19 17 7 32 32 H 1.08998 * 109.47090 * 299.99889 * 19 17 7 33 33 H 1.08998 * 109.47386 * 65.44836 * 21 20 17 34 34 H 1.08999 * 109.47315 * 185.44933 * 21 20 17 35 35 H 1.09006 * 109.47347 * 305.44441 * 21 20 17 36 36 H 1.07997 * 119.97826 * 179.70331 * 22 6 5 37 37 H 1.08002 * 120.03174 * 180.27589 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 3.4314 1.2846 0.0005 5 6 4.0562 2.5167 0.0000 6 6 3.3021 3.6756 -0.0005 7 6 3.9864 5.0183 -0.0005 8 1 5.0669 4.8754 -0.0005 9 6 3.5811 5.7887 1.2296 10 1 2.6877 6.3954 1.2169 11 6 4.3509 5.7189 2.3714 12 7 5.3610 4.8790 2.4332 13 14 3.9543 6.8122 3.8332 14 1 4.7018 8.0897 3.7132 15 1 2.4963 7.0924 3.8607 16 1 4.3497 6.1233 5.0881 17 6 3.5758 5.8000 -1.2501 18 1 2.4884 5.8544 -1.3035 19 6 4.1126 5.0905 -2.4948 20 8 4.1162 7.1212 -1.1845 21 6 3.1383 8.1387 -0.9601 22 6 1.9213 3.6047 0.0053 23 6 1.2916 2.3751 0.0001 24 1 -0.3634 0.5139 0.8899 25 1 -0.3632 0.5139 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 4.0209 0.3798 0.0016 28 1 5.1346 2.5748 0.0000 29 1 5.5124 4.2487 1.7116 30 1 3.7003 4.0827 -2.5448 31 1 3.8197 5.6471 -3.3850 32 1 5.1999 5.0360 -2.4413 33 1 2.6979 8.0078 0.0283 34 1 3.6129 9.1182 -1.0195 35 1 2.3582 8.0665 -1.7179 36 1 1.3344 4.5113 0.0097 37 1 0.2130 2.3202 0.0001 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259333522.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:06 Heat of formation + Delta-G solvation = -69.565625 kcal Electronic energy + Delta-G solvation = -18796.601979 eV Core-core repulsion = 15925.156715 eV Total energy + Delta-G solvation = -2871.445263 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.62983 -38.00184 -36.60762 -33.63900 -31.57937 -30.41944 -29.24971 -27.43236 -26.00588 -25.72536 -23.14293 -22.17980 -21.16994 -19.65492 -17.67432 -16.93733 -16.10074 -15.41359 -15.36415 -14.88663 -14.24601 -14.02188 -13.79108 -13.39273 -13.35096 -12.96751 -12.57581 -12.26011 -12.15147 -11.88696 -11.65119 -11.29922 -11.10760 -10.86700 -10.54683 -10.50277 -10.40534 -10.23186 -10.13151 -9.67111 -8.66324 -8.59624 -8.36452 -8.31539 -7.24564 -6.33027 -4.03980 2.02864 2.19671 3.43453 3.45924 3.60852 3.65369 4.46747 4.55239 4.67510 5.17687 5.28295 5.37725 5.39014 5.49935 5.56832 5.70271 5.89885 5.92953 5.97892 6.05160 6.09896 6.18535 6.26778 6.33638 6.38874 6.40030 6.61200 6.73200 6.83943 6.93136 7.13636 7.24330 7.43270 7.64379 7.92348 8.14064 8.18152 8.42506 8.86436 9.65080 11.04710 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.018416 B = 0.008009 C = 0.006569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.013074 B = 3495.202180 C = 4261.312188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.326 6.326 3 C 0.089 3.911 4 C -0.149 4.149 5 C -0.092 4.092 6 C -0.057 4.057 7 C 0.048 3.952 8 H 0.050 0.950 9 C -0.574 4.574 10 H 0.049 0.951 11 C 0.026 3.974 12 N -0.906 5.906 13 Si 1.063 2.937 14 H -0.287 1.287 15 H -0.290 1.290 16 H -0.286 1.286 17 C 0.103 3.897 18 H 0.045 0.955 19 C -0.155 4.155 20 O -0.374 6.374 21 C 0.040 3.960 22 C -0.077 4.077 23 C -0.208 4.208 24 H 0.051 0.949 25 H 0.049 0.951 26 H 0.091 0.909 27 H 0.118 0.882 28 H 0.120 0.880 29 H 0.272 0.728 30 H 0.062 0.938 31 H 0.044 0.956 32 H 0.057 0.943 33 H 0.050 0.950 34 H 0.069 0.931 35 H 0.022 0.978 36 H 0.115 0.885 37 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.941 -3.453 -6.633 10.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.241 6.241 3 C 0.045 3.955 4 C -0.168 4.168 5 C -0.110 4.110 6 C -0.058 4.058 7 C 0.029 3.971 8 H 0.069 0.931 9 C -0.612 4.612 10 H 0.067 0.933 11 C -0.179 4.179 12 N -0.541 5.541 13 Si 0.892 3.108 14 H -0.213 1.213 15 H -0.216 1.216 16 H -0.212 1.212 17 C 0.045 3.955 18 H 0.063 0.937 19 C -0.212 4.212 20 O -0.293 6.293 21 C -0.057 4.057 22 C -0.095 4.095 23 C -0.227 4.227 24 H 0.069 0.931 25 H 0.068 0.932 26 H 0.110 0.890 27 H 0.136 0.864 28 H 0.138 0.862 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.063 0.937 32 H 0.076 0.924 33 H 0.069 0.931 34 H 0.088 0.912 35 H 0.040 0.960 36 H 0.133 0.867 37 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -7.127 -3.169 -5.139 9.341 hybrid contribution -1.209 -0.362 -1.293 1.807 sum -8.336 -3.531 -6.432 11.105 Atomic orbital electron populations 1.22900 0.79513 1.02910 1.01025 1.85988 1.20489 1.27781 1.89841 1.18831 0.92252 0.83553 1.00834 1.20282 0.91098 0.98260 1.07146 1.20903 0.99626 0.91137 0.99352 1.20645 0.93408 0.96788 0.94973 1.18422 0.96854 0.88089 0.93753 0.93138 1.21667 1.12619 1.29734 0.97144 0.93294 1.25702 0.93502 0.98260 1.00451 1.70724 1.28689 1.19036 1.35635 0.83632 0.75343 0.75882 0.75924 1.21318 1.21609 1.21186 1.22123 0.95756 0.82963 0.94666 0.93679 1.22041 1.01972 0.99926 0.97290 1.87799 1.33557 1.15022 1.92881 1.22679 0.92061 0.91297 0.99695 1.20692 0.94723 0.95939 0.98174 1.21093 0.98959 0.92724 1.09883 0.93072 0.93208 0.89032 0.86403 0.86197 0.91637 0.91945 0.93666 0.92378 0.93148 0.91217 0.95985 0.86653 0.86722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 9.81 101.05 0.99 1.37 16 2 O -0.33 -5.39 10.50 -19.42 -0.20 -5.60 16 3 C 0.09 1.65 6.69 -39.21 -0.26 1.39 16 4 C -0.15 -2.85 9.99 -39.44 -0.39 -3.24 16 5 C -0.09 -1.91 9.39 -39.61 -0.37 -2.28 16 6 C -0.06 -1.25 3.77 -104.60 -0.39 -1.65 16 7 C 0.05 1.14 1.43 -92.93 -0.13 1.01 16 8 H 0.05 1.33 6.49 -51.93 -0.34 1.00 16 9 C -0.57 -15.18 6.94 -34.44 -0.24 -15.41 16 10 H 0.05 1.28 6.54 -52.49 -0.34 0.94 16 11 C 0.03 0.73 5.45 -17.82 -0.10 0.63 16 12 N -0.91 -26.75 13.54 55.43 0.75 -26.00 16 13 Si 1.06 25.03 29.91 -169.99 -5.08 19.95 16 14 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 15 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 16 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 17 C 0.10 2.15 2.35 -26.73 -0.06 2.08 16 18 H 0.05 0.91 6.65 -51.93 -0.35 0.56 16 19 C -0.15 -2.79 9.39 37.16 0.35 -2.44 16 20 O -0.37 -8.17 9.90 -35.23 -0.35 -8.52 16 21 C 0.04 0.72 10.56 101.05 1.07 1.78 16 22 C -0.08 -1.56 8.74 -39.60 -0.35 -1.91 16 23 C -0.21 -3.77 9.04 -39.43 -0.36 -4.12 16 24 H 0.05 0.58 7.66 -51.93 -0.40 0.19 16 25 H 0.05 0.54 7.66 -51.93 -0.40 0.14 16 26 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.12 2.01 8.06 -52.49 -0.42 1.59 16 28 H 0.12 2.43 7.94 -52.49 -0.42 2.01 16 29 H 0.27 7.91 6.53 -40.82 -0.27 7.64 16 30 H 0.06 1.08 7.41 -51.93 -0.38 0.69 16 31 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 33 H 0.05 0.97 6.49 -51.93 -0.34 0.64 16 34 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.02 0.34 8.05 -51.93 -0.42 -0.08 16 36 H 0.12 2.27 7.55 -52.49 -0.40 1.88 16 37 H 0.11 1.74 6.30 -52.49 -0.33 1.41 16 LS Contribution 304.60 15.07 4.59 4.59 Total: -1.00 -30.54 304.60 -5.83 -36.37 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -5.28 Total: 2.00 kcal Atomic # 6 Polarization: -22.54 SS G_CDS: -0.25 Total: -22.79 kcal Atomic # 7 Polarization: -26.75 SS G_CDS: 0.75 Total: -26.00 kcal Atomic # 8 Polarization: -13.56 SS G_CDS: -0.55 Total: -14.12 kcal Atomic # 14 Polarization: 25.03 SS G_CDS: -5.08 Total: 19.95 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -30.54 -5.83 -36.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259333522.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.195 kcal (2) G-P(sol) polarization free energy of solvation -30.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds