Wall clock time and date at job start Mon Mar 30 2020 06:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35897 * 117.00383 * 2 1 4 4 C 1.38726 * 120.05850 * 180.02562 * 3 2 1 5 5 C 1.38150 * 119.94805 * 179.97438 * 4 3 2 6 6 C 1.38272 * 120.04963 * 359.97438 * 5 4 3 7 7 C 1.50701 * 119.94128 * 180.02562 * 6 5 4 8 8 H 1.09002 * 109.46861 * 359.97438 * 7 6 5 9 9 C 1.50699 * 109.47050 * 119.99766 * 7 6 5 10 10 H 1.07997 * 119.99844 * 57.14692 * 9 7 6 11 11 C 1.37875 * 119.99807 * 237.13694 * 9 7 6 12 12 N 1.31518 * 119.99965 * 173.36071 * 11 9 7 13 13 Si 1.86803 * 120.00289 * 353.35889 * 11 9 7 14 14 H 1.48502 * 109.46844 * 88.64763 * 13 11 9 15 15 H 1.48496 * 109.47156 * 208.64737 * 13 11 9 16 16 H 1.48498 * 109.46970 * 328.64995 * 13 11 9 17 17 C 1.52998 * 109.46969 * 240.00109 * 7 6 5 18 18 H 1.08997 * 109.47142 * 305.54245 * 17 7 6 19 19 C 1.52999 * 109.47566 * 65.54540 * 17 7 6 20 20 O 1.42902 * 109.47144 * 185.54369 * 17 7 6 21 21 C 1.42900 * 113.99923 * 114.47955 * 20 17 7 22 22 C 1.38262 * 120.11265 * 0.27337 * 6 5 4 23 23 C 1.38145 * 120.05668 * 359.45341 * 22 6 5 24 24 H 1.08998 * 109.47407 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.47128 * 300.00581 * 1 2 3 26 26 H 1.08994 * 109.46802 * 60.00415 * 1 2 3 27 27 H 1.07996 * 120.02963 * 359.94771 * 4 3 2 28 28 H 1.07996 * 119.97349 * 180.02562 * 5 4 3 29 29 H 0.96995 * 120.00095 * 179.97438 * 12 11 9 30 30 H 1.08998 * 109.47672 * 180.02562 * 19 17 7 31 31 H 1.09008 * 109.46944 * 300.00320 * 19 17 7 32 32 H 1.08997 * 109.47131 * 59.99699 * 19 17 7 33 33 H 1.08996 * 109.47231 * 177.91840 * 21 20 17 34 34 H 1.09000 * 109.47391 * 297.91827 * 21 20 17 35 35 H 1.08997 * 109.47331 * 57.91803 * 21 20 17 36 36 H 1.08005 * 119.96721 * 179.70647 * 22 6 5 37 37 H 1.08001 * 120.02703 * 180.27269 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 3.4314 1.2847 -0.0005 5 6 4.0562 2.5168 -0.0011 6 6 3.3020 3.6757 -0.0016 7 6 3.9862 5.0185 -0.0028 8 1 5.0668 4.8756 -0.0026 9 6 3.5809 5.7877 -1.2336 10 1 2.5370 5.9846 -1.4279 11 6 4.5429 6.2402 -2.1116 12 7 4.1860 6.7958 -3.2490 13 14 6.3532 6.0643 -1.6856 14 1 6.8488 4.7489 -2.1643 15 1 7.1237 7.1518 -2.3404 16 1 6.5261 6.1524 -0.2133 17 6 3.5756 5.8011 1.2461 18 1 2.4884 5.8590 1.2974 19 6 4.1079 5.0899 2.4918 20 8 4.1203 7.1207 1.1818 21 6 3.1361 8.1512 1.0745 22 6 1.9212 3.6047 0.0041 23 6 1.2916 2.3751 -0.0011 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5140 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 4.0209 0.3799 -0.0001 28 1 5.1346 2.5749 -0.0019 29 1 4.8628 7.1145 -3.8664 30 1 3.8150 5.6473 3.3815 31 1 3.6924 4.0833 2.5408 32 1 5.1951 5.0321 2.4404 33 1 3.6277 9.1239 1.0682 34 1 2.5741 8.0221 0.1495 35 1 2.4556 8.0935 1.9240 36 1 1.3344 4.5114 0.0085 37 1 0.2130 2.3202 -0.0010 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259333525.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:08 Heat of formation + Delta-G solvation = -63.941670 kcal Electronic energy + Delta-G solvation = -18760.602149 eV Core-core repulsion = 15889.400759 eV Total energy + Delta-G solvation = -2871.201390 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.71194 -38.00242 -36.63018 -33.39403 -31.79848 -30.52005 -29.40649 -27.75517 -26.46290 -25.63160 -22.95993 -22.36070 -21.22256 -19.34525 -17.75651 -17.01836 -15.98764 -15.46921 -15.41722 -14.86036 -14.62704 -14.12932 -13.81819 -13.41796 -13.21255 -12.89699 -12.59016 -12.36918 -12.10048 -11.95493 -11.77586 -11.62728 -11.20530 -10.95021 -10.75229 -10.50078 -10.33399 -10.23226 -9.85467 -9.57161 -9.08280 -8.81108 -8.43340 -8.36355 -7.36382 -6.06911 -4.05141 1.92281 2.08703 3.34789 3.43414 3.53308 3.58590 4.38075 4.49413 4.70594 5.13165 5.24996 5.28663 5.32383 5.42298 5.53229 5.71154 5.84067 5.92773 5.98964 6.00781 6.05600 6.13249 6.23903 6.31648 6.35392 6.49401 6.54784 6.69950 6.83051 6.84149 6.94710 7.11091 7.31282 7.49803 7.71751 7.84603 8.20642 8.47262 8.93723 9.57560 11.05404 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.022201 B = 0.007463 C = 0.006701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.902314 B = 3750.809302 C = 4177.286948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.326 6.326 3 C 0.093 3.907 4 C -0.149 4.149 5 C -0.096 4.096 6 C -0.058 4.058 7 C 0.033 3.967 8 H 0.050 0.950 9 C -0.496 4.496 10 H 0.072 0.928 11 C 0.081 3.919 12 N -0.898 5.898 13 Si 0.872 3.128 14 H -0.280 1.280 15 H -0.291 1.291 16 H -0.254 1.254 17 C 0.097 3.903 18 H 0.050 0.950 19 C -0.159 4.159 20 O -0.373 6.373 21 C 0.042 3.958 22 C -0.074 4.074 23 C -0.204 4.204 24 H 0.092 0.908 25 H 0.050 0.950 26 H 0.052 0.948 27 H 0.120 0.880 28 H 0.120 0.880 29 H 0.263 0.737 30 H 0.045 0.955 31 H 0.061 0.939 32 H 0.055 0.945 33 H 0.069 0.931 34 H 0.052 0.948 35 H 0.021 0.979 36 H 0.120 0.880 37 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.907 -7.469 8.896 12.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.240 6.240 3 C 0.049 3.951 4 C -0.168 4.168 5 C -0.114 4.114 6 C -0.059 4.059 7 C 0.014 3.986 8 H 0.069 0.931 9 C -0.533 4.533 10 H 0.090 0.910 11 C -0.122 4.122 12 N -0.535 5.535 13 Si 0.700 3.300 14 H -0.207 1.207 15 H -0.217 1.217 16 H -0.178 1.178 17 C 0.039 3.961 18 H 0.068 0.932 19 C -0.217 4.217 20 O -0.291 6.291 21 C -0.055 4.055 22 C -0.092 4.092 23 C -0.223 4.223 24 H 0.110 0.890 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.138 0.862 28 H 0.138 0.862 29 H 0.073 0.927 30 H 0.064 0.936 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.071 0.929 35 H 0.039 0.961 36 H 0.138 0.862 37 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -4.559 -7.522 8.724 12.388 hybrid contribution 0.357 0.114 -0.113 0.392 sum -4.202 -7.408 8.611 12.111 Atomic orbital electron populations 1.22924 0.79333 1.03025 1.01152 1.85993 1.20638 1.27681 1.89729 1.18855 0.92266 0.83651 1.00337 1.20267 0.91155 0.98186 1.07169 1.20886 0.99548 0.91187 0.99824 1.20347 0.93493 0.96184 0.95850 1.18681 0.96394 0.88725 0.94804 0.93144 1.20666 0.95102 1.33540 1.03961 0.90997 1.24991 0.98804 0.94185 0.94176 1.69905 1.34025 1.40809 1.08796 0.86892 0.85679 0.77553 0.79917 1.20662 1.21733 1.17785 1.22273 0.96203 0.83264 0.94383 0.93167 1.22115 1.01843 1.00046 0.97666 1.87799 1.32580 1.14435 1.94330 1.22633 0.92407 0.91022 0.99463 1.20753 0.94585 0.96252 0.97623 1.21130 0.99183 0.92627 1.09378 0.88971 0.93099 0.92937 0.86233 0.86197 0.92699 0.93622 0.91961 0.92575 0.91284 0.92921 0.96081 0.86193 0.86464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 9.81 101.05 0.99 1.33 16 2 O -0.33 -5.02 10.50 -19.42 -0.20 -5.22 16 3 C 0.09 1.59 6.69 -39.22 -0.26 1.33 16 4 C -0.15 -2.60 9.99 -39.43 -0.39 -2.99 16 5 C -0.10 -1.82 9.66 -39.60 -0.38 -2.20 16 6 C -0.06 -1.19 3.78 -104.60 -0.40 -1.59 16 7 C 0.03 0.75 1.68 -92.92 -0.16 0.60 16 8 H 0.05 1.20 4.46 -51.93 -0.23 0.97 16 9 C -0.50 -13.28 7.53 -34.44 -0.26 -13.54 16 10 H 0.07 2.08 7.96 -52.49 -0.42 1.66 16 11 C 0.08 2.29 5.47 -17.82 -0.10 2.19 16 12 N -0.90 -27.02 13.96 55.43 0.77 -26.25 16 13 Si 0.87 21.88 27.05 -169.99 -4.60 17.28 16 14 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 15 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 16 H -0.25 -6.23 6.67 56.52 0.38 -5.85 16 17 C 0.10 1.98 2.34 -26.73 -0.06 1.91 16 18 H 0.05 0.98 6.66 -51.93 -0.35 0.63 16 19 C -0.16 -2.76 9.38 37.16 0.35 -2.41 16 20 O -0.37 -8.15 9.84 -35.23 -0.35 -8.49 16 21 C 0.04 0.78 10.58 101.05 1.07 1.84 16 22 C -0.07 -1.41 8.72 -39.61 -0.35 -1.76 16 23 C -0.20 -3.47 9.04 -39.43 -0.36 -3.83 16 24 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.05 0.51 7.66 -51.93 -0.40 0.11 16 26 H 0.05 0.56 7.66 -51.93 -0.40 0.16 16 27 H 0.12 1.83 8.06 -52.49 -0.42 1.41 16 28 H 0.12 2.13 7.94 -52.49 -0.42 1.71 16 29 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 30 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.06 1.01 7.40 -51.92 -0.38 0.63 16 32 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.05 1.07 7.78 -51.93 -0.40 0.66 16 35 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.12 2.25 7.46 -52.48 -0.39 1.86 16 37 H 0.12 1.67 6.30 -52.49 -0.33 1.34 16 LS Contribution 305.25 15.07 4.60 4.60 Total: -1.00 -30.85 305.25 -5.49 -36.34 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -5.41 Total: 0.85 kcal Atomic # 6 Polarization: -18.80 SS G_CDS: -0.30 Total: -19.10 kcal Atomic # 7 Polarization: -27.02 SS G_CDS: 0.77 Total: -26.25 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: -0.55 Total: -13.72 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.60 Total: 17.28 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -30.85 -5.49 -36.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259333525.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.604 kcal (2) G-P(sol) polarization free energy of solvation -30.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds