Wall clock time and date at job start Mon Mar 30 2020 06:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35897 * 117.00383 * 2 1 4 4 C 1.38726 * 120.05850 * 180.02562 * 3 2 1 5 5 C 1.38150 * 119.94805 * 179.97438 * 4 3 2 6 6 C 1.38272 * 120.04963 * 359.97438 * 5 4 3 7 7 C 1.50701 * 119.94128 * 180.02562 * 6 5 4 8 8 H 1.09002 * 109.46861 * 359.97438 * 7 6 5 9 9 C 1.50699 * 109.47050 * 119.99766 * 7 6 5 10 10 H 1.07997 * 119.99844 * 57.14692 * 9 7 6 11 11 C 1.37875 * 119.99807 * 237.13694 * 9 7 6 12 12 N 1.31518 * 119.99965 * 173.36071 * 11 9 7 13 13 Si 1.86803 * 120.00289 * 353.35889 * 11 9 7 14 14 H 1.48502 * 109.46844 * 88.64763 * 13 11 9 15 15 H 1.48496 * 109.47156 * 208.64737 * 13 11 9 16 16 H 1.48498 * 109.46970 * 328.64995 * 13 11 9 17 17 C 1.52998 * 109.46969 * 240.00109 * 7 6 5 18 18 H 1.08997 * 109.47142 * 305.54245 * 17 7 6 19 19 C 1.52999 * 109.47566 * 65.54540 * 17 7 6 20 20 O 1.42902 * 109.47144 * 185.54369 * 17 7 6 21 21 C 1.42900 * 113.99923 * 114.47955 * 20 17 7 22 22 C 1.38262 * 120.11265 * 0.27337 * 6 5 4 23 23 C 1.38145 * 120.05668 * 359.45341 * 22 6 5 24 24 H 1.08998 * 109.47407 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.47128 * 300.00581 * 1 2 3 26 26 H 1.08994 * 109.46802 * 60.00415 * 1 2 3 27 27 H 1.07996 * 120.02963 * 359.94771 * 4 3 2 28 28 H 1.07996 * 119.97349 * 180.02562 * 5 4 3 29 29 H 0.96995 * 120.00095 * 179.97438 * 12 11 9 30 30 H 1.08998 * 109.47672 * 180.02562 * 19 17 7 31 31 H 1.09008 * 109.46944 * 300.00320 * 19 17 7 32 32 H 1.08997 * 109.47131 * 59.99699 * 19 17 7 33 33 H 1.08996 * 109.47231 * 177.91840 * 21 20 17 34 34 H 1.09000 * 109.47391 * 297.91827 * 21 20 17 35 35 H 1.08997 * 109.47331 * 57.91803 * 21 20 17 36 36 H 1.08005 * 119.96721 * 179.70647 * 22 6 5 37 37 H 1.08001 * 120.02703 * 180.27269 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 3.4314 1.2847 -0.0005 5 6 4.0562 2.5168 -0.0011 6 6 3.3020 3.6757 -0.0016 7 6 3.9862 5.0185 -0.0028 8 1 5.0668 4.8756 -0.0026 9 6 3.5809 5.7877 -1.2336 10 1 2.5370 5.9846 -1.4279 11 6 4.5429 6.2402 -2.1116 12 7 4.1860 6.7958 -3.2490 13 14 6.3532 6.0643 -1.6856 14 1 6.8488 4.7489 -2.1643 15 1 7.1237 7.1518 -2.3404 16 1 6.5261 6.1524 -0.2133 17 6 3.5756 5.8011 1.2461 18 1 2.4884 5.8590 1.2974 19 6 4.1079 5.0899 2.4918 20 8 4.1203 7.1207 1.1818 21 6 3.1361 8.1512 1.0745 22 6 1.9212 3.6047 0.0041 23 6 1.2916 2.3751 -0.0011 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5140 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 4.0209 0.3799 -0.0001 28 1 5.1346 2.5749 -0.0019 29 1 4.8628 7.1145 -3.8664 30 1 3.8150 5.6473 3.3815 31 1 3.6924 4.0833 2.5408 32 1 5.1951 5.0321 2.4404 33 1 3.6277 9.1239 1.0682 34 1 2.5741 8.0221 0.1495 35 1 2.4556 8.0935 1.9240 36 1 1.3344 4.5114 0.0085 37 1 0.2130 2.3202 -0.0010 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259333525.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:08 Heat of formation + Delta-G solvation = -83.241028 kcal Electronic energy + Delta-G solvation = -18761.439032 eV Core-core repulsion = 15889.400759 eV Total energy + Delta-G solvation = -2872.038273 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.04142 -39.49042 -38.06560 -35.19355 -33.67915 -31.90074 -30.84121 -29.20841 -27.76907 -27.14750 -24.75820 -23.78659 -22.62197 -20.96806 -19.08768 -18.95214 -17.57225 -16.75591 -16.55597 -16.50050 -16.32453 -15.63111 -15.38951 -15.03645 -14.56985 -14.41918 -14.28743 -13.84040 -13.55201 -13.47901 -13.16836 -12.93957 -12.73971 -12.68782 -12.14237 -11.97040 -11.91144 -11.77063 -11.64890 -11.35869 -10.92012 -10.78304 -10.17631 -9.81669 -8.79591 -8.23843 -6.22631 0.51924 0.65565 1.33915 1.39415 1.52999 2.41004 2.48064 2.92489 3.11646 3.26129 3.94606 4.05402 4.19831 4.34780 4.40574 4.44145 4.47626 4.57277 4.60356 4.63862 4.69627 4.74992 4.82654 4.83973 4.93695 4.98546 5.04849 5.25037 5.27225 5.37539 5.44546 5.61260 5.67489 5.92660 5.97518 6.34158 6.56458 6.62285 6.80553 7.41854 8.92305 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.022201 B = 0.007463 C = 0.006701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.902314 B = 3750.809302 C = 4177.286948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.335 6.335 3 C 0.098 3.902 4 C -0.152 4.152 5 C -0.102 4.102 6 C -0.084 4.084 7 C 0.034 3.966 8 H 0.040 0.960 9 C -0.480 4.480 10 H 0.037 0.963 11 C 0.024 3.976 12 N -0.948 5.948 13 Si 0.925 3.075 14 H -0.271 1.271 15 H -0.294 1.294 16 H -0.245 1.245 17 C 0.096 3.904 18 H 0.054 0.946 19 C -0.149 4.149 20 O -0.398 6.398 21 C 0.041 3.959 22 C -0.085 4.085 23 C -0.202 4.202 24 H 0.122 0.878 25 H 0.063 0.937 26 H 0.056 0.944 27 H 0.142 0.858 28 H 0.128 0.872 29 H 0.262 0.738 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.052 0.948 33 H 0.085 0.915 34 H 0.023 0.977 35 H 0.052 0.948 36 H 0.113 0.887 37 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.189 -9.346 10.747 15.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.249 6.249 3 C 0.053 3.947 4 C -0.171 4.171 5 C -0.121 4.121 6 C -0.085 4.085 7 C 0.014 3.986 8 H 0.059 0.941 9 C -0.517 4.517 10 H 0.055 0.945 11 C -0.173 4.173 12 N -0.589 5.589 13 Si 0.751 3.249 14 H -0.197 1.197 15 H -0.221 1.221 16 H -0.169 1.169 17 C 0.038 3.962 18 H 0.072 0.928 19 C -0.207 4.207 20 O -0.317 6.317 21 C -0.056 4.056 22 C -0.103 4.103 23 C -0.220 4.220 24 H 0.140 0.860 25 H 0.082 0.918 26 H 0.074 0.926 27 H 0.160 0.840 28 H 0.145 0.855 29 H 0.071 0.929 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.071 0.929 33 H 0.104 0.896 34 H 0.042 0.958 35 H 0.071 0.929 36 H 0.131 0.869 37 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -4.854 -9.420 10.602 14.990 hybrid contribution 0.248 0.590 -0.653 0.914 sum -4.606 -8.830 9.949 14.077 Atomic orbital electron populations 1.23291 0.76893 1.05382 1.01928 1.85998 1.23125 1.26538 1.89244 1.19000 0.92457 0.84394 0.98801 1.20507 0.91796 0.98369 1.06420 1.21000 1.00006 0.91279 0.99766 1.20154 0.94194 0.95435 0.98696 1.18627 0.95949 0.89921 0.94057 0.94135 1.20867 0.93268 1.32587 1.05014 0.94480 1.25703 1.02686 0.94674 0.94239 1.70037 1.35053 1.43526 1.10279 0.86036 0.81252 0.77628 0.79966 1.19703 1.22108 1.16879 1.22273 0.96552 0.82731 0.94657 0.92836 1.22013 1.01507 1.00445 0.96710 1.87757 1.34168 1.15389 1.94422 1.22721 0.92459 0.91080 0.99340 1.20775 0.94186 0.97063 0.98306 1.21346 1.00667 0.91691 1.08318 0.86017 0.91821 0.92577 0.84049 0.85457 0.92946 0.91511 0.90931 0.92889 0.89647 0.95816 0.92911 0.86925 0.83741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 9.81 113.37 1.11 1.47 16 2 O -0.33 -9.21 10.50 -92.39 -0.97 -10.18 16 3 C 0.10 3.11 6.69 22.51 0.15 3.26 16 4 C -0.15 -4.96 9.99 22.37 0.22 -4.73 16 5 C -0.10 -3.73 9.66 22.26 0.22 -3.51 16 6 C -0.08 -3.41 3.78 -19.85 -0.08 -3.48 16 7 C 0.03 1.53 1.68 -12.29 -0.02 1.51 16 8 H 0.04 1.90 4.46 -2.39 -0.01 1.89 16 9 C -0.48 -26.45 7.53 25.60 0.19 -26.26 16 10 H 0.04 2.25 7.96 -2.91 -0.02 2.23 16 11 C 0.02 1.39 5.47 84.65 0.46 1.85 16 12 N -0.95 -59.22 13.96 21.45 0.30 -58.92 16 13 Si 0.93 45.77 27.05 68.60 1.86 47.62 16 14 H -0.27 -12.89 7.11 99.48 0.71 -12.18 16 15 H -0.29 -14.57 7.11 99.48 0.71 -13.87 16 16 H -0.25 -11.65 6.67 99.48 0.66 -10.98 16 17 C 0.10 3.83 2.34 30.59 0.07 3.90 16 18 H 0.05 2.07 6.66 -2.39 -0.02 2.05 16 19 C -0.15 -4.86 9.38 71.98 0.68 -4.18 16 20 O -0.40 -17.14 9.84 -148.98 -1.47 -18.60 16 21 C 0.04 1.49 10.58 113.37 1.20 2.68 16 22 C -0.09 -3.19 8.72 22.25 0.19 -3.00 16 23 C -0.20 -6.42 9.04 22.37 0.20 -6.22 16 24 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16 25 H 0.06 1.02 7.66 -2.38 -0.02 1.00 16 26 H 0.06 1.00 7.66 -2.39 -0.02 0.99 16 27 H 0.14 3.90 8.06 -2.91 -0.02 3.88 16 28 H 0.13 4.33 7.94 -2.91 -0.02 4.31 16 29 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 30 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.07 2.20 7.40 -2.38 -0.02 2.18 16 32 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.09 2.79 8.14 -2.39 -0.02 2.77 16 34 H 0.02 0.98 7.78 -2.39 -0.02 0.96 16 35 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.11 4.29 7.46 -2.91 -0.02 4.27 16 37 H 0.14 3.69 6.30 -2.91 -0.02 3.68 16 Total: -1.00 -67.55 305.25 5.32 -62.22 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: 1.00 Total: 14.56 kcal Atomic # 6 Polarization: -41.31 SS G_CDS: 4.60 Total: -36.71 kcal Atomic # 7 Polarization: -59.22 SS G_CDS: 0.30 Total: -58.92 kcal Atomic # 8 Polarization: -26.34 SS G_CDS: -2.44 Total: -28.78 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 1.86 Total: 47.62 kcal Total: -67.55 5.32 -62.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259333525.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.017 kcal (2) G-P(sol) polarization free energy of solvation -67.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds