Wall clock time and date at job start Mon Mar 30 2020 06:50:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35895 * 117.00078 * 2 1 4 4 C 1.38750 * 120.05762 * 0.24997 * 3 2 1 5 5 C 1.38119 * 119.94326 * 180.32501 * 4 3 2 6 6 C 1.38291 * 120.05758 * 359.67231 * 5 4 3 7 7 C 1.38238 * 120.10746 * 0.03234 * 6 5 4 8 8 C 1.38164 * 120.06010 * 0.02562 * 7 6 5 9 9 C 1.50703 * 120.02914 * 179.97438 * 8 7 6 10 10 H 1.09002 * 109.47152 * 179.97438 * 9 8 7 11 11 C 1.50699 * 109.47227 * 60.00076 * 9 8 7 12 12 H 1.07999 * 120.00019 * 359.97438 * 11 9 8 13 13 C 1.37877 * 120.00129 * 180.02562 * 11 9 8 14 14 N 1.31513 * 119.99969 * 180.02562 * 13 11 9 15 15 Si 1.86797 * 119.99840 * 359.97438 * 13 11 9 16 16 H 1.48497 * 109.47167 * 89.99961 * 15 13 11 17 17 H 1.48500 * 109.47028 * 210.00109 * 15 13 11 18 18 H 1.48497 * 109.47377 * 330.00144 * 15 13 11 19 19 C 1.53000 * 109.46912 * 300.00188 * 9 8 7 20 20 H 1.09004 * 109.46724 * 180.02562 * 19 9 8 21 21 C 1.53002 * 109.47233 * 299.99748 * 19 9 8 22 22 O 1.42895 * 109.47621 * 60.00071 * 19 9 8 23 23 C 1.42894 * 114.00460 * 149.99672 * 22 19 9 24 24 H 1.09002 * 109.47485 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47375 * 300.00698 * 1 2 3 26 26 H 1.09001 * 109.46992 * 60.00057 * 1 2 3 27 27 H 1.08006 * 120.02827 * 0.02562 * 4 3 2 28 28 H 1.07997 * 119.97371 * 179.70568 * 5 4 3 29 29 H 1.07995 * 119.94547 * 180.02562 * 6 5 4 30 30 H 1.08006 * 119.96875 * 180.02562 * 7 6 5 31 31 H 0.96999 * 119.99716 * 179.97438 * 14 13 11 32 32 H 1.09000 * 109.46986 * 60.00203 * 21 19 9 33 33 H 1.08993 * 109.47662 * 180.02562 * 21 19 9 34 34 H 1.09002 * 109.47075 * 300.00932 * 21 19 9 35 35 H 1.08998 * 109.47530 * 180.02562 * 23 22 19 36 36 H 1.08997 * 109.47250 * 300.00585 * 23 22 19 37 37 H 1.09007 * 109.47137 * 60.00098 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2914 2.3752 0.0052 5 6 1.9209 3.6046 -0.0016 6 6 3.3020 3.6757 -0.0067 7 6 4.0559 2.5170 -0.0058 8 6 3.4311 1.2847 -0.0002 9 6 4.2537 0.0220 0.0002 10 1 3.5910 -0.8434 0.0054 11 6 5.1276 -0.0079 1.2276 12 1 5.0913 0.8063 1.9363 13 6 5.9742 -1.0741 1.4454 14 7 6.7364 -1.1003 2.5168 15 14 6.0375 -2.4819 0.2193 16 1 7.0672 -2.1948 -0.8114 17 1 6.3838 -3.7402 0.9279 18 1 4.7119 -2.6300 -0.4333 19 6 5.1319 -0.0150 -1.2521 20 1 5.7265 -0.9285 -1.2520 21 6 4.2447 0.0153 -2.4983 22 8 6.0008 1.1195 -1.2583 23 6 7.2493 0.8918 -1.9149 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 0.2128 2.3203 0.0097 28 1 1.3341 4.5113 -0.0023 29 1 3.7923 4.6379 -0.0116 30 1 5.1344 2.5750 -0.0094 31 1 7.3318 -1.8506 2.6701 32 1 3.6497 0.9286 -2.4986 33 1 4.8702 -0.0115 -3.3904 34 1 3.5819 -0.8500 -2.4935 35 1 7.8512 1.7997 -1.8761 36 1 7.7808 0.0824 -1.4144 37 1 7.0687 0.6194 -2.9548 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259686386.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:13 Heat of formation + Delta-G solvation = -71.379637 kcal Electronic energy + Delta-G solvation = -19420.956221 eV Core-core repulsion = 16549.432296 eV Total energy + Delta-G solvation = -2871.523925 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.15726 -39.32597 -37.94663 -35.57416 -33.79459 -31.30177 -30.76758 -29.29732 -27.89912 -27.41956 -24.88005 -23.35473 -22.77542 -21.24093 -18.96923 -18.70081 -17.67466 -16.86395 -16.57019 -16.44338 -16.29699 -15.87865 -15.50309 -14.95320 -14.80367 -14.34228 -14.07928 -13.82064 -13.47006 -13.30417 -13.23462 -12.96121 -12.76795 -12.51932 -12.36349 -12.10516 -11.91309 -11.82672 -11.60013 -11.32888 -10.96740 -10.60346 -10.28331 -9.47339 -8.83389 -8.26303 -6.25714 0.66858 0.72446 1.20054 1.29416 1.37978 2.29342 2.60418 2.98315 3.08241 3.16755 3.97057 4.12783 4.13109 4.28768 4.40646 4.44430 4.47121 4.49765 4.52134 4.60754 4.70075 4.75955 4.77644 4.82246 4.88045 5.03864 5.13254 5.13942 5.24071 5.45545 5.58119 5.67382 5.76131 5.96582 6.17417 6.33351 6.55754 6.71579 6.76621 7.34318 8.91114 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.020222 B = 0.009809 C = 0.008652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.308127 B = 2853.948064 C = 3235.286228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.340 6.340 3 C 0.101 3.899 4 C -0.214 4.214 5 C -0.095 4.095 6 C -0.169 4.169 7 C -0.073 4.073 8 C -0.091 4.091 9 C 0.055 3.945 10 H 0.042 0.958 11 C -0.483 4.483 12 H 0.030 0.970 13 C 0.016 3.984 14 N -0.948 5.948 15 Si 0.926 3.074 16 H -0.264 1.264 17 H -0.293 1.293 18 H -0.247 1.247 19 C 0.087 3.913 20 H 0.031 0.969 21 C -0.162 4.162 22 O -0.375 6.375 23 C 0.024 3.976 24 H 0.111 0.889 25 H 0.060 0.940 26 H 0.069 0.931 27 H 0.151 0.849 28 H 0.153 0.847 29 H 0.137 0.863 30 H 0.120 0.880 31 H 0.263 0.737 32 H 0.060 0.940 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.099 0.901 36 H 0.016 0.984 37 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.326 5.184 -10.916 15.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.254 6.254 3 C 0.056 3.944 4 C -0.232 4.232 5 C -0.112 4.112 6 C -0.187 4.187 7 C -0.091 4.091 8 C -0.091 4.091 9 C 0.037 3.963 10 H 0.059 0.941 11 C -0.522 4.522 12 H 0.049 0.951 13 C -0.180 4.180 14 N -0.590 5.590 15 Si 0.753 3.247 16 H -0.190 1.190 17 H -0.221 1.221 18 H -0.171 1.171 19 C 0.029 3.971 20 H 0.049 0.951 21 C -0.220 4.220 22 O -0.294 6.294 23 C -0.073 4.073 24 H 0.130 0.870 25 H 0.079 0.921 26 H 0.087 0.913 27 H 0.168 0.832 28 H 0.171 0.829 29 H 0.155 0.845 30 H 0.138 0.862 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.118 0.882 36 H 0.035 0.965 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.188 5.064 -10.742 15.647 hybrid contribution 0.591 -1.054 0.017 1.208 sum -9.597 4.010 -10.725 14.940 Atomic orbital electron populations 1.23285 0.77079 1.05039 1.02090 1.86089 1.23001 1.27321 1.89021 1.19083 0.91747 0.85053 0.98497 1.21390 1.00630 0.91731 1.09461 1.21169 0.94241 0.97630 0.98196 1.21310 0.94648 0.98144 1.04647 1.21112 1.00432 0.91431 0.96168 1.19320 0.90593 0.96174 1.03045 1.18180 0.92709 0.93127 0.92328 0.94057 1.21043 1.20671 1.04911 1.05544 0.95116 1.25691 0.95038 1.00330 0.96929 1.70028 1.27115 1.32699 1.29127 0.86196 0.80059 0.78943 0.79489 1.18979 1.22076 1.17087 1.22433 0.91248 0.87526 0.95864 0.95149 1.22216 1.00052 1.02484 0.97210 1.87914 1.27519 1.35578 1.78399 1.22865 0.86365 1.01961 0.96081 0.87024 0.92140 0.91279 0.83178 0.82905 0.84511 0.86218 0.92752 0.92068 0.91419 0.91795 0.88217 0.96512 0.92866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.45 9.81 113.37 1.11 1.57 16 2 O -0.34 -12.51 9.26 -92.37 -0.86 -13.37 16 3 C 0.10 3.89 6.66 22.51 0.15 4.04 16 4 C -0.21 -6.51 9.04 22.36 0.20 -6.31 16 5 C -0.09 -2.70 10.04 22.25 0.22 -2.48 16 6 C -0.17 -5.64 10.04 22.28 0.22 -5.41 16 7 C -0.07 -3.08 8.29 22.25 0.18 -2.90 16 8 C -0.09 -4.04 3.48 -19.77 -0.07 -4.10 16 9 C 0.06 2.75 1.48 -12.29 -0.02 2.73 16 10 H 0.04 2.14 6.05 -2.39 -0.01 2.13 16 11 C -0.48 -28.80 8.47 25.60 0.22 -28.58 16 12 H 0.03 2.05 7.85 -2.91 -0.02 2.03 16 13 C 0.02 0.98 5.45 84.65 0.46 1.44 16 14 N -0.95 -60.84 13.96 21.45 0.30 -60.54 16 15 Si 0.93 45.75 24.37 68.60 1.67 47.42 16 16 H -0.26 -12.23 6.87 99.48 0.68 -11.55 16 17 H -0.29 -14.35 7.11 99.48 0.71 -13.65 16 18 H -0.25 -11.44 6.53 99.48 0.65 -10.79 16 19 C 0.09 3.84 1.93 30.60 0.06 3.90 16 20 H 0.03 1.42 2.91 -2.39 -0.01 1.41 16 21 C -0.16 -5.82 9.28 71.98 0.67 -5.15 16 22 O -0.38 -16.29 7.08 -148.98 -1.05 -17.35 16 23 C 0.02 0.85 10.82 113.37 1.23 2.07 16 24 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 25 H 0.06 1.28 7.65 -2.39 -0.02 1.26 16 26 H 0.07 1.31 7.67 -2.39 -0.02 1.29 16 27 H 0.15 3.45 6.30 -2.91 -0.02 3.43 16 28 H 0.15 3.09 8.06 -2.91 -0.02 3.07 16 29 H 0.14 3.77 8.06 -2.91 -0.02 3.74 16 30 H 0.12 5.50 6.18 -2.91 -0.02 5.48 16 31 H 0.26 15.85 8.31 -92.71 -0.77 15.08 16 32 H 0.06 2.20 7.22 -2.39 -0.02 2.18 16 33 H 0.07 2.06 7.87 -2.39 -0.02 2.04 16 34 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 35 H 0.10 3.01 8.14 -2.39 -0.02 2.99 16 36 H 0.02 0.64 8.09 -2.39 -0.02 0.62 16 37 H 0.05 1.58 7.87 -2.38 -0.02 1.56 16 Total: -1.00 -72.06 294.50 5.67 -66.39 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: 0.97 Total: 16.62 kcal Atomic # 6 Polarization: -43.82 SS G_CDS: 4.64 Total: -39.18 kcal Atomic # 7 Polarization: -60.84 SS G_CDS: 0.30 Total: -60.54 kcal Atomic # 8 Polarization: -28.80 SS G_CDS: -1.91 Total: -30.71 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 1.67 Total: 47.42 kcal Total: -72.06 5.67 -66.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259686386.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.990 kcal (2) G-P(sol) polarization free energy of solvation -72.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds