Wall clock time and date at job start Mon Mar 30 2020 06:54:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42899 * 109.47202 * 2 1 4 4 C 1.35893 * 117.00286 * 179.97438 * 3 2 1 5 5 C 1.38742 * 120.05376 * 359.73183 * 4 3 2 6 6 C 1.38147 * 119.93945 * 179.74179 * 5 4 3 7 7 C 1.38261 * 120.05874 * 0.50811 * 6 5 4 8 8 C 1.50697 * 119.94573 * 179.74635 * 7 6 5 9 9 H 1.08994 * 109.47411 * 180.02562 * 8 7 6 10 10 C 1.50701 * 109.47194 * 60.01457 * 8 7 6 11 11 H 1.07995 * 120.00527 * 275.10116 * 10 8 7 12 12 C 1.37882 * 119.99530 * 95.09984 * 10 8 7 13 13 N 1.31513 * 120.00248 * 5.47349 * 12 10 8 14 14 Si 1.86799 * 119.99763 * 185.47401 * 12 10 8 15 15 H 1.48501 * 109.47367 * 60.00330 * 14 12 10 16 16 H 1.48504 * 109.47220 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47274 * 299.99726 * 14 12 10 18 18 C 1.53003 * 109.47104 * 300.02010 * 8 7 6 19 19 O 1.42898 * 109.47442 * 185.35637 * 18 8 7 20 20 C 1.42899 * 114.00035 * 179.97438 * 19 18 8 21 21 C 1.38263 * 120.11100 * 359.76601 * 7 6 5 22 22 C 1.38145 * 120.05632 * 359.97438 * 21 7 6 23 23 H 1.08998 * 109.47010 * 60.00255 * 1 2 3 24 24 H 1.09003 * 109.47034 * 179.97438 * 1 2 3 25 25 H 1.08992 * 109.47196 * 299.99819 * 1 2 3 26 26 H 1.09003 * 109.46968 * 120.00234 * 2 1 3 27 27 H 1.08997 * 109.47145 * 239.99707 * 2 1 3 28 28 H 1.07995 * 120.02497 * 359.97438 * 5 4 3 29 29 H 1.08003 * 119.96396 * 180.27042 * 6 5 4 30 30 H 0.96995 * 120.00512 * 179.97438 * 13 12 10 31 31 H 1.08997 * 109.46889 * 305.35953 * 18 8 7 32 32 H 1.09007 * 109.46873 * 65.35610 * 18 8 7 33 33 H 1.09003 * 109.46953 * 180.02562 * 20 19 18 34 34 H 1.08993 * 109.46972 * 299.99960 * 20 19 18 35 35 H 1.09003 * 109.46814 * 60.00395 * 20 19 18 36 36 H 1.08005 * 119.97063 * 180.02562 * 21 7 6 37 37 H 1.08004 * 120.02642 * 179.97438 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3536 1.5254 0.0005 5 6 4.1998 0.4259 0.0067 6 6 5.5690 0.6097 0.0018 7 6 6.0962 1.8878 0.0015 8 6 7.5902 2.0853 0.0019 9 1 7.8157 3.1516 0.0020 10 6 8.1817 1.4466 -1.2282 11 1 8.4234 0.3941 -1.2271 12 6 8.4144 2.2062 -2.3551 13 7 8.2218 3.5068 -2.3229 14 14 9.0032 1.3880 -3.9278 15 1 7.9996 0.3871 -4.3708 16 1 9.1778 2.4159 -4.9852 17 1 10.3008 0.7106 -3.6776 18 6 8.1899 1.4372 1.2515 19 8 9.5869 1.7307 1.3166 20 6 10.2464 1.1693 2.4531 21 6 5.2550 2.9851 0.0011 22 6 3.8851 2.8068 0.0005 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 1.8933 -0.5139 0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 3.7884 -0.5726 0.0115 29 1 6.2281 -0.2459 0.0022 30 1 8.3858 4.0412 -3.1155 31 1 7.6941 1.8312 2.1386 32 1 8.0472 0.3575 1.2048 33 1 11.3026 1.4377 2.4296 34 1 9.7933 1.5581 3.3649 35 1 10.1465 0.0840 2.4318 36 1 5.6693 3.9825 0.0004 37 1 3.2285 3.6643 0.0006 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259692168.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:24 Heat of formation + Delta-G solvation = -70.140813 kcal Electronic energy + Delta-G solvation = -18126.829379 eV Core-core repulsion = 15255.359174 eV Total energy + Delta-G solvation = -2871.470205 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.55912 -37.60705 -36.59470 -33.49060 -31.78259 -30.71982 -30.19306 -27.55872 -25.84107 -24.44232 -23.66017 -22.29900 -21.03825 -19.66870 -17.74533 -16.57487 -15.85291 -15.80341 -15.05917 -14.72897 -14.60902 -14.43904 -13.88035 -13.42157 -13.08413 -12.97049 -12.77117 -12.51119 -12.25368 -11.86865 -11.55562 -11.41035 -11.00461 -10.94879 -10.80872 -10.54480 -10.38284 -10.25565 -10.16855 -9.31006 -9.14653 -8.71094 -8.42365 -8.22106 -7.23536 -5.98972 -3.99612 2.12952 2.28086 3.36027 3.39806 3.42429 3.57785 4.45671 4.56178 4.75420 4.96588 5.04602 5.27600 5.37249 5.46650 5.55854 5.59635 5.78153 5.78439 5.82369 5.94141 6.07073 6.12848 6.21363 6.22702 6.29056 6.35230 6.51003 6.73674 6.85767 7.02452 7.33837 7.40336 7.54793 7.82413 7.95326 8.03699 8.14855 8.38468 9.04049 9.61246 11.10259 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.018448 B = 0.006403 C = 0.005365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.445404 B = 4371.756787 C = 5217.462812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.057 3.943 3 O -0.325 6.325 4 C 0.092 3.908 5 C -0.212 4.212 6 C -0.079 4.079 7 C -0.055 4.055 8 C 0.065 3.935 9 H 0.077 0.923 10 C -0.495 4.495 11 H 0.054 0.946 12 C 0.069 3.931 13 N -0.887 5.887 14 Si 0.890 3.110 15 H -0.278 1.278 16 H -0.287 1.287 17 H -0.276 1.276 18 C 0.080 3.920 19 O -0.368 6.368 20 C 0.031 3.969 21 C -0.081 4.081 22 C -0.154 4.154 23 H 0.064 0.936 24 H 0.073 0.927 25 H 0.063 0.937 26 H 0.056 0.944 27 H 0.057 0.943 28 H 0.113 0.887 29 H 0.117 0.883 30 H 0.262 0.738 31 H 0.020 0.980 32 H 0.031 0.969 33 H 0.075 0.925 34 H 0.028 0.972 35 H 0.030 0.970 36 H 0.125 0.875 37 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.687 -5.664 6.765 12.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.019 4.019 3 O -0.240 6.240 4 C 0.048 3.952 5 C -0.230 4.230 6 C -0.097 4.097 7 C -0.056 4.056 8 C 0.046 3.954 9 H 0.095 0.905 10 C -0.533 4.533 11 H 0.072 0.928 12 C -0.133 4.133 13 N -0.524 5.524 14 Si 0.718 3.282 15 H -0.203 1.203 16 H -0.213 1.213 17 H -0.202 1.202 18 C 0.004 3.996 19 O -0.286 6.286 20 C -0.067 4.067 21 C -0.099 4.099 22 C -0.173 4.173 23 H 0.083 0.917 24 H 0.092 0.908 25 H 0.082 0.918 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.131 0.869 29 H 0.135 0.865 30 H 0.072 0.928 31 H 0.038 0.962 32 H 0.049 0.951 33 H 0.093 0.907 34 H 0.047 0.953 35 H 0.049 0.951 36 H 0.143 0.857 37 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -8.731 -5.239 6.499 12.080 hybrid contribution 0.263 -0.922 -0.821 1.262 sum -8.468 -6.161 5.679 11.913 Atomic orbital electron populations 1.21757 0.93420 1.02340 1.03219 1.22620 0.95170 0.83029 1.01070 1.85981 1.20050 1.28164 1.89809 1.18804 0.81300 0.94363 1.00706 1.21077 0.94672 0.96949 1.10343 1.20775 0.93166 0.97682 0.98105 1.20513 0.98030 0.91777 0.95276 1.17947 0.85647 1.00230 0.91570 0.90469 1.20782 1.40770 0.95272 0.96450 0.92775 1.24921 0.94830 0.94716 0.98866 1.69884 1.48814 1.04503 1.29214 0.86692 0.79264 0.79169 0.83102 1.20332 1.21299 1.20176 1.22697 0.80696 0.97948 0.98289 1.88068 1.22346 1.74764 1.43439 1.22625 0.97711 0.97003 0.89314 1.20953 0.91381 0.99419 0.98124 1.20306 0.95288 0.94033 1.07633 0.91729 0.90831 0.91781 0.92562 0.92463 0.86868 0.86502 0.92835 0.96151 0.95068 0.90652 0.95334 0.95128 0.85704 0.86496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 10.28 37.16 0.38 -1.06 16 2 C 0.06 0.71 5.46 37.16 0.20 0.92 16 3 O -0.32 -5.42 10.14 -19.40 -0.20 -5.62 16 4 C 0.09 1.72 6.69 -39.21 -0.26 1.46 16 5 C -0.21 -3.88 9.04 -39.43 -0.36 -4.23 16 6 C -0.08 -1.62 8.86 -39.61 -0.35 -1.97 16 7 C -0.06 -1.24 4.77 -104.61 -0.50 -1.73 16 8 C 0.06 1.60 2.35 -92.92 -0.22 1.38 16 9 H 0.08 2.12 6.96 -51.93 -0.36 1.76 16 10 C -0.50 -13.47 7.71 -34.44 -0.27 -13.74 16 11 H 0.05 1.46 7.82 -52.49 -0.41 1.05 16 12 C 0.07 1.94 5.45 -17.82 -0.10 1.84 16 13 N -0.89 -25.68 12.77 55.43 0.71 -24.97 16 14 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 15 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 16 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 17 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 18 C 0.08 1.74 5.04 37.16 0.19 1.92 16 19 O -0.37 -8.22 10.46 -35.23 -0.37 -8.59 16 20 C 0.03 0.51 11.01 101.05 1.11 1.62 16 21 C -0.08 -1.71 9.66 -39.61 -0.38 -2.09 16 22 C -0.15 -2.97 9.99 -39.43 -0.39 -3.36 16 23 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 24 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.06 0.65 7.65 -51.93 -0.40 0.26 16 27 H 0.06 0.70 7.68 -51.93 -0.40 0.30 16 28 H 0.11 1.75 6.30 -52.49 -0.33 1.42 16 29 H 0.12 2.30 7.64 -52.48 -0.40 1.90 16 30 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 31 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.03 0.64 7.58 -51.92 -0.39 0.25 16 33 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.13 2.62 7.94 -52.48 -0.42 2.20 16 37 H 0.12 2.01 8.06 -52.48 -0.42 1.59 16 LS Contribution 313.46 15.07 4.72 4.72 Total: -1.00 -30.41 313.46 -6.72 -37.13 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: -5.63 Total: -0.28 kcal Atomic # 6 Polarization: -18.12 SS G_CDS: -0.94 Total: -19.06 kcal Atomic # 7 Polarization: -25.68 SS G_CDS: 0.71 Total: -24.97 kcal Atomic # 8 Polarization: -13.64 SS G_CDS: -0.57 Total: -14.21 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.41 -6.72 -37.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259692168.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.009 kcal (2) G-P(sol) polarization free energy of solvation -30.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds