Wall clock time and date at job start Mon Mar 30 2020 06:54:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42899 * 109.47202 * 2 1 4 4 C 1.35893 * 117.00286 * 179.97438 * 3 2 1 5 5 C 1.38742 * 120.05376 * 359.73183 * 4 3 2 6 6 C 1.38147 * 119.93945 * 179.74179 * 5 4 3 7 7 C 1.38261 * 120.05874 * 0.50811 * 6 5 4 8 8 C 1.50697 * 119.94573 * 179.74635 * 7 6 5 9 9 H 1.08994 * 109.47411 * 180.02562 * 8 7 6 10 10 C 1.50701 * 109.47194 * 60.01457 * 8 7 6 11 11 H 1.07995 * 120.00527 * 275.10116 * 10 8 7 12 12 C 1.37882 * 119.99530 * 95.09984 * 10 8 7 13 13 N 1.31513 * 120.00248 * 5.47349 * 12 10 8 14 14 Si 1.86799 * 119.99763 * 185.47401 * 12 10 8 15 15 H 1.48501 * 109.47367 * 60.00330 * 14 12 10 16 16 H 1.48504 * 109.47220 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47274 * 299.99726 * 14 12 10 18 18 C 1.53003 * 109.47104 * 300.02010 * 8 7 6 19 19 O 1.42898 * 109.47442 * 185.35637 * 18 8 7 20 20 C 1.42899 * 114.00035 * 179.97438 * 19 18 8 21 21 C 1.38263 * 120.11100 * 359.76601 * 7 6 5 22 22 C 1.38145 * 120.05632 * 359.97438 * 21 7 6 23 23 H 1.08998 * 109.47010 * 60.00255 * 1 2 3 24 24 H 1.09003 * 109.47034 * 179.97438 * 1 2 3 25 25 H 1.08992 * 109.47196 * 299.99819 * 1 2 3 26 26 H 1.09003 * 109.46968 * 120.00234 * 2 1 3 27 27 H 1.08997 * 109.47145 * 239.99707 * 2 1 3 28 28 H 1.07995 * 120.02497 * 359.97438 * 5 4 3 29 29 H 1.08003 * 119.96396 * 180.27042 * 6 5 4 30 30 H 0.96995 * 120.00512 * 179.97438 * 13 12 10 31 31 H 1.08997 * 109.46889 * 305.35953 * 18 8 7 32 32 H 1.09007 * 109.46873 * 65.35610 * 18 8 7 33 33 H 1.09003 * 109.46953 * 180.02562 * 20 19 18 34 34 H 1.08993 * 109.46972 * 299.99960 * 20 19 18 35 35 H 1.09003 * 109.46814 * 60.00395 * 20 19 18 36 36 H 1.08005 * 119.97063 * 180.02562 * 21 7 6 37 37 H 1.08004 * 120.02642 * 179.97438 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3536 1.5254 0.0005 5 6 4.1998 0.4259 0.0067 6 6 5.5690 0.6097 0.0018 7 6 6.0962 1.8878 0.0015 8 6 7.5902 2.0853 0.0019 9 1 7.8157 3.1516 0.0020 10 6 8.1817 1.4466 -1.2282 11 1 8.4234 0.3941 -1.2271 12 6 8.4144 2.2062 -2.3551 13 7 8.2218 3.5068 -2.3229 14 14 9.0032 1.3880 -3.9278 15 1 7.9996 0.3871 -4.3708 16 1 9.1778 2.4159 -4.9852 17 1 10.3008 0.7106 -3.6776 18 6 8.1899 1.4372 1.2515 19 8 9.5869 1.7307 1.3166 20 6 10.2464 1.1693 2.4531 21 6 5.2550 2.9851 0.0011 22 6 3.8851 2.8068 0.0005 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 1.8933 -0.5139 0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 3.7884 -0.5726 0.0115 29 1 6.2281 -0.2459 0.0022 30 1 8.3858 4.0412 -3.1155 31 1 7.6941 1.8312 2.1386 32 1 8.0472 0.3575 1.2048 33 1 11.3026 1.4377 2.4296 34 1 9.7933 1.5581 3.3649 35 1 10.1465 0.0840 2.4318 36 1 5.6693 3.9825 0.0004 37 1 3.2285 3.6643 0.0006 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259692168.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:24 Heat of formation + Delta-G solvation = -87.959866 kcal Electronic energy + Delta-G solvation = -18127.602071 eV Core-core repulsion = 15255.359174 eV Total energy + Delta-G solvation = -2872.242897 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.97700 -39.15237 -38.11777 -35.33230 -33.21584 -32.18737 -31.69289 -29.06818 -27.49076 -26.23178 -24.79031 -23.91294 -22.43376 -21.36471 -19.09421 -18.56751 -17.39697 -16.93438 -16.55275 -16.51921 -16.27762 -15.98184 -15.43240 -14.96473 -14.40478 -14.28762 -14.17795 -14.01477 -13.52628 -13.29235 -13.01443 -12.79877 -12.70946 -12.51232 -12.44778 -12.18333 -12.05873 -11.67089 -11.57995 -11.10767 -11.02327 -10.53970 -10.33520 -9.76808 -8.79981 -8.07011 -6.13766 0.57438 0.71789 1.41477 1.43255 1.49674 2.38061 2.45358 2.99040 3.14006 3.36017 3.99199 4.08010 4.10608 4.25011 4.40961 4.41938 4.49338 4.53626 4.61420 4.64432 4.68776 4.74722 4.78651 4.86512 4.98308 5.03210 5.07074 5.22703 5.24639 5.49582 5.56438 5.70858 5.76797 5.98782 6.12866 6.34943 6.59797 6.63451 6.97681 7.49025 9.00952 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.018448 B = 0.006403 C = 0.005365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.445404 B = 4371.756787 C = 5217.462812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.043 3.957 3 O -0.333 6.333 4 C 0.099 3.901 5 C -0.204 4.204 6 C -0.085 4.085 7 C -0.080 4.080 8 C 0.064 3.936 9 H 0.036 0.964 10 C -0.500 4.500 11 H 0.051 0.949 12 C 0.016 3.984 13 N -0.921 5.921 14 Si 0.947 3.053 15 H -0.271 1.271 16 H -0.286 1.286 17 H -0.271 1.271 18 C 0.088 3.912 19 O -0.409 6.409 20 C 0.024 3.976 21 C -0.095 4.095 22 C -0.159 4.159 23 H 0.060 0.940 24 H 0.101 0.899 25 H 0.065 0.935 26 H 0.070 0.930 27 H 0.063 0.937 28 H 0.147 0.853 29 H 0.122 0.878 30 H 0.259 0.741 31 H 0.035 0.965 32 H 0.042 0.958 33 H 0.092 0.908 34 H 0.047 0.953 35 H 0.045 0.955 36 H 0.112 0.888 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.084 -7.772 7.170 14.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.032 4.032 3 O -0.248 6.248 4 C 0.054 3.946 5 C -0.223 4.223 6 C -0.103 4.103 7 C -0.081 4.081 8 C 0.045 3.955 9 H 0.054 0.946 10 C -0.538 4.538 11 H 0.070 0.930 12 C -0.183 4.183 13 N -0.561 5.561 14 Si 0.773 3.227 15 H -0.197 1.197 16 H -0.212 1.212 17 H -0.196 1.196 18 C 0.012 3.988 19 O -0.328 6.328 20 C -0.072 4.072 21 C -0.113 4.113 22 C -0.178 4.178 23 H 0.080 0.920 24 H 0.120 0.880 25 H 0.084 0.916 26 H 0.088 0.912 27 H 0.081 0.919 28 H 0.165 0.835 29 H 0.140 0.860 30 H 0.068 0.932 31 H 0.053 0.947 32 H 0.060 0.940 33 H 0.110 0.890 34 H 0.066 0.934 35 H 0.063 0.937 36 H 0.130 0.870 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -10.135 -7.371 6.921 14.316 hybrid contribution 0.608 -0.317 -0.840 1.084 sum -9.527 -7.688 6.080 13.669 Atomic orbital electron populations 1.21789 0.91146 1.04164 1.03154 1.23038 0.97041 0.81126 1.01961 1.85998 1.18526 1.31021 1.89296 1.18889 0.82517 0.94065 0.99121 1.21345 0.93614 0.98547 1.08752 1.20847 0.94385 0.96806 0.98249 1.20341 0.96751 0.93200 0.97841 1.17825 0.87587 0.97720 0.92332 0.94586 1.21088 1.40191 0.95086 0.97431 0.93027 1.25660 0.95563 0.95231 1.01836 1.70029 1.50643 1.05697 1.29694 0.85785 0.78972 0.78285 0.79682 1.19659 1.21209 1.19630 1.22534 0.80782 0.98144 0.97360 1.88000 1.22659 1.75886 1.46249 1.22888 0.98286 0.97845 0.88213 1.20916 0.92456 0.98738 0.99205 1.20452 0.94597 0.95457 1.07268 0.92046 0.88045 0.91637 0.91212 0.91913 0.83532 0.85960 0.93172 0.94679 0.94020 0.88999 0.93437 0.93656 0.86969 0.84808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.30 10.28 71.98 0.74 -1.56 16 2 C 0.04 0.94 5.46 71.98 0.39 1.33 16 3 O -0.33 -10.26 10.14 -92.34 -0.94 -11.19 16 4 C 0.10 3.50 6.69 22.51 0.15 3.65 16 5 C -0.20 -7.00 9.04 22.37 0.20 -6.80 16 6 C -0.08 -3.38 8.86 22.25 0.20 -3.18 16 7 C -0.08 -3.67 4.77 -19.85 -0.09 -3.76 16 8 C 0.06 3.26 2.35 -12.29 -0.03 3.23 16 9 H 0.04 2.09 6.96 -2.39 -0.02 2.08 16 10 C -0.50 -27.70 7.71 25.60 0.20 -27.50 16 11 H 0.05 2.81 7.82 -2.91 -0.02 2.78 16 12 C 0.02 0.90 5.45 84.66 0.46 1.36 16 13 N -0.92 -55.26 12.77 21.45 0.27 -54.99 16 14 Si 0.95 44.97 29.54 68.60 2.03 46.99 16 15 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 16 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 17 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 18 C 0.09 3.83 5.04 71.98 0.36 4.19 16 19 O -0.41 -18.32 10.46 -148.98 -1.56 -19.88 16 20 C 0.02 0.75 11.01 113.37 1.25 2.00 16 21 C -0.09 -4.13 9.66 22.25 0.22 -3.91 16 22 C -0.16 -6.06 9.99 22.36 0.22 -5.84 16 23 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 24 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.07 1.35 7.65 -2.39 -0.02 1.33 16 27 H 0.06 1.31 7.68 -2.39 -0.02 1.30 16 28 H 0.15 3.97 6.30 -2.91 -0.02 3.95 16 29 H 0.12 4.65 7.64 -2.91 -0.02 4.63 16 30 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 31 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.04 1.69 7.58 -2.38 -0.02 1.67 16 33 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 34 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.11 5.02 7.94 -2.91 -0.02 4.99 16 37 H 0.13 4.51 8.06 -2.91 -0.02 4.49 16 Total: -1.00 -66.49 313.46 5.11 -61.38 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: 1.03 Total: 14.49 kcal Atomic # 6 Polarization: -41.07 SS G_CDS: 4.27 Total: -36.80 kcal Atomic # 7 Polarization: -55.26 SS G_CDS: 0.27 Total: -54.99 kcal Atomic # 8 Polarization: -28.58 SS G_CDS: -2.49 Total: -31.08 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 46.99 kcal Total: -66.49 5.11 -61.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259692168.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.579 kcal (2) G-P(sol) polarization free energy of solvation -66.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds