Wall clock time and date at job start Mon Mar 30 2020 06:54:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42892 * 109.47357 * 2 1 4 4 C 1.35899 * 117.00159 * 180.02562 * 3 2 1 5 5 C 1.38731 * 120.05413 * 179.97438 * 4 3 2 6 6 C 1.38154 * 119.94256 * 179.97438 * 5 4 3 7 7 C 1.38263 * 120.05245 * 0.02562 * 6 5 4 8 8 C 1.50698 * 119.94222 * 179.97438 * 7 6 5 9 9 H 1.09008 * 109.47203 * 4.79746 * 8 7 6 10 10 C 1.50694 * 109.47461 * 124.79917 * 8 7 6 11 11 H 1.08007 * 120.00168 * 65.52215 * 10 8 7 12 12 C 1.37881 * 120.00178 * 245.52873 * 10 8 7 13 13 N 1.31510 * 119.99961 * 186.35243 * 12 10 8 14 14 Si 1.86801 * 119.99969 * 6.35308 * 12 10 8 15 15 H 1.48507 * 109.46731 * 266.21312 * 14 12 10 16 16 H 1.48499 * 109.46904 * 26.20757 * 14 12 10 17 17 H 1.48497 * 109.47075 * 146.21496 * 14 12 10 18 18 C 1.53003 * 109.46972 * 244.80116 * 8 7 6 19 19 O 1.42900 * 109.46947 * 174.69256 * 18 8 7 20 20 C 1.42899 * 113.99918 * 179.97438 * 19 18 8 21 21 C 1.38268 * 120.11390 * 0.26755 * 7 6 5 22 22 C 1.38151 * 120.05491 * 359.45819 * 21 7 6 23 23 H 1.09001 * 109.47012 * 300.00214 * 1 2 3 24 24 H 1.09005 * 109.47200 * 60.00409 * 1 2 3 25 25 H 1.09008 * 109.47597 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47012 * 239.99786 * 2 1 3 27 27 H 1.09004 * 109.46536 * 119.99939 * 2 1 3 28 28 H 1.07997 * 120.03364 * 359.95407 * 5 4 3 29 29 H 1.07994 * 119.96844 * 180.02562 * 6 5 4 30 30 H 0.97007 * 120.00220 * 179.97438 * 13 12 10 31 31 H 1.08997 * 109.46757 * 294.68643 * 18 8 7 32 32 H 1.08996 * 109.47416 * 54.69220 * 18 8 7 33 33 H 1.09005 * 109.46917 * 59.99841 * 20 19 18 34 34 H 1.08999 * 109.47118 * 179.97438 * 20 19 18 35 35 H 1.08993 * 109.47240 * 299.99812 * 20 19 18 36 36 H 1.07998 * 119.97096 * 179.70486 * 21 7 6 37 37 H 1.07990 * 120.02507 * 180.27306 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3536 1.5252 -0.0005 5 6 3.8851 2.8067 -0.0011 6 6 5.2551 2.9850 -0.0011 7 6 6.0962 1.8876 -0.0011 8 6 7.5902 2.0850 -0.0017 9 1 7.8163 3.1480 0.0839 10 6 8.1949 1.3474 1.1649 11 1 8.1505 0.2689 1.2036 12 6 8.8048 2.0491 2.1831 13 7 9.4410 1.4046 3.1367 14 14 8.7274 3.9154 2.2079 15 1 9.9356 4.4697 1.5457 16 1 7.5134 4.3701 1.4837 17 1 8.6720 4.3898 3.6140 18 6 8.1757 1.5426 -1.3070 19 8 9.5724 1.8400 -1.3624 20 6 10.2194 1.3735 -2.5481 21 6 5.5689 0.6095 -0.0067 22 6 4.1997 0.4258 -0.0009 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8901 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8932 -0.5139 0.8901 28 1 3.2286 3.6642 -0.0019 29 1 5.6693 3.9824 -0.0012 30 1 9.8704 1.8983 3.8528 31 1 8.0323 0.4629 -1.3484 32 1 7.6711 2.0089 -2.1531 33 1 9.7571 1.8360 -3.4202 34 1 11.2760 1.6388 -2.5137 35 1 10.1184 0.2903 -2.6149 36 1 6.2281 -0.2460 -0.0115 37 1 3.7884 -0.5727 -0.0008 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259692170.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:27 Heat of formation + Delta-G solvation = -67.123038 kcal Electronic energy + Delta-G solvation = -18154.042839 eV Core-core repulsion = 15282.703495 eV Total energy + Delta-G solvation = -2871.339345 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.72405 -37.77796 -36.70494 -33.52555 -31.89321 -31.04386 -30.38463 -27.72838 -26.02632 -24.46822 -23.78436 -22.37425 -21.19751 -19.57368 -17.89050 -17.05922 -15.94749 -15.87963 -15.22367 -14.87031 -14.63516 -14.51209 -13.95649 -13.40930 -13.18709 -13.16124 -12.91067 -12.58105 -12.36409 -12.10433 -11.79167 -11.54159 -11.35316 -11.04864 -10.82552 -10.63167 -10.48405 -10.30780 -9.79122 -9.58007 -9.21810 -8.73922 -8.50426 -8.40648 -7.41227 -6.03848 -4.01679 1.93173 2.08375 3.37173 3.42049 3.43291 3.46224 4.35448 4.48760 4.65152 4.90206 4.97054 5.20907 5.30515 5.34780 5.41837 5.49834 5.72282 5.72538 5.79837 5.85160 5.93705 6.01636 6.04670 6.10060 6.14906 6.18195 6.29734 6.56740 6.66763 6.85960 6.91257 7.10022 7.33030 7.49008 7.71032 7.86577 8.06957 8.50307 8.97590 9.59194 11.09127 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.022088 B = 0.006161 C = 0.005476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.375212 B = 4543.600571 C = 5112.248151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.056 3.944 3 O -0.324 6.324 4 C 0.098 3.902 5 C -0.152 4.152 6 C -0.095 4.095 7 C -0.067 4.067 8 C 0.042 3.958 9 H 0.054 0.946 10 C -0.493 4.493 11 H 0.074 0.926 12 C 0.078 3.922 13 N -0.897 5.897 14 Si 0.876 3.124 15 H -0.275 1.275 16 H -0.263 1.263 17 H -0.291 1.291 18 C 0.081 3.919 19 O -0.370 6.370 20 C 0.032 3.968 21 C -0.067 4.067 22 C -0.207 4.207 23 H 0.064 0.936 24 H 0.063 0.937 25 H 0.074 0.926 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.120 0.880 29 H 0.121 0.879 30 H 0.263 0.737 31 H 0.039 0.961 32 H 0.021 0.979 33 H 0.028 0.972 34 H 0.076 0.924 35 H 0.033 0.967 36 H 0.123 0.877 37 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.465 -1.153 -9.066 14.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.020 4.020 3 O -0.239 6.239 4 C 0.054 3.946 5 C -0.171 4.171 6 C -0.114 4.114 7 C -0.068 4.068 8 C 0.023 3.977 9 H 0.072 0.928 10 C -0.530 4.530 11 H 0.092 0.908 12 C -0.124 4.124 13 N -0.535 5.535 14 Si 0.704 3.296 15 H -0.200 1.200 16 H -0.188 1.188 17 H -0.217 1.217 18 C 0.005 3.995 19 O -0.289 6.289 20 C -0.065 4.065 21 C -0.085 4.085 22 C -0.226 4.226 23 H 0.083 0.917 24 H 0.082 0.918 25 H 0.093 0.907 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.138 0.862 29 H 0.139 0.861 30 H 0.073 0.927 31 H 0.057 0.943 32 H 0.039 0.961 33 H 0.047 0.953 34 H 0.095 0.905 35 H 0.052 0.948 36 H 0.141 0.859 37 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -11.410 -0.900 -8.731 14.396 hybrid contribution 0.025 0.480 0.003 0.481 sum -11.385 -0.420 -8.728 14.352 Atomic orbital electron populations 1.21762 0.93295 1.02460 1.03236 1.22659 0.95286 0.82792 1.01243 1.85988 1.19825 1.28451 1.89623 1.18823 0.81506 0.94290 0.99941 1.20262 0.95037 0.94251 1.07539 1.20932 0.91878 0.98953 0.99598 1.20384 0.97333 0.92289 0.96800 1.18296 0.86976 0.98514 0.93868 0.92785 1.20705 1.34876 0.94609 1.02820 0.90794 1.25009 0.93995 0.98169 0.95236 1.69899 1.34556 1.35878 1.13140 0.86853 0.79112 0.86720 0.76930 1.20047 1.18786 1.21704 1.22670 0.80831 0.98368 0.97678 1.88027 1.22512 1.79275 1.39046 1.22624 0.97818 0.97942 0.88113 1.20809 0.93300 0.97640 0.96730 1.21147 0.94598 0.97226 1.09649 0.91694 0.91772 0.90714 0.92423 0.92263 0.86242 0.86118 0.92704 0.94290 0.96055 0.95343 0.90547 0.94813 0.85860 0.86441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 10.28 37.16 0.38 -0.96 16 2 C 0.06 0.65 5.46 37.16 0.20 0.86 16 3 O -0.32 -5.06 10.14 -19.42 -0.20 -5.25 16 4 C 0.10 1.72 6.69 -39.22 -0.26 1.45 16 5 C -0.15 -2.70 9.99 -39.43 -0.39 -3.09 16 6 C -0.10 -1.85 9.66 -39.60 -0.38 -2.23 16 7 C -0.07 -1.42 4.78 -104.60 -0.50 -1.92 16 8 C 0.04 1.00 2.11 -92.93 -0.20 0.80 16 9 H 0.05 1.30 4.40 -51.92 -0.23 1.08 16 10 C -0.49 -13.65 8.10 -34.44 -0.28 -13.93 16 11 H 0.07 2.20 7.85 -52.48 -0.41 1.79 16 12 C 0.08 2.26 5.47 -17.82 -0.10 2.16 16 13 N -0.90 -27.55 13.96 55.43 0.77 -26.78 16 14 Si 0.88 22.00 27.19 -169.99 -4.62 17.38 16 15 H -0.27 -6.89 7.11 56.52 0.40 -6.49 16 16 H -0.26 -6.19 6.48 56.52 0.37 -5.83 16 17 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 18 C 0.08 1.71 5.10 37.16 0.19 1.90 16 19 O -0.37 -8.17 10.46 -35.23 -0.37 -8.54 16 20 C 0.03 0.53 11.01 101.05 1.11 1.64 16 21 C -0.07 -1.31 8.86 -39.60 -0.35 -1.66 16 22 C -0.21 -3.59 9.04 -39.43 -0.36 -3.95 16 23 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 24 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.07 0.51 8.14 -51.92 -0.42 0.08 16 26 H 0.06 0.62 7.66 -51.93 -0.40 0.23 16 27 H 0.06 0.68 7.66 -51.93 -0.40 0.28 16 28 H 0.12 1.86 8.06 -52.49 -0.42 1.43 16 29 H 0.12 2.22 7.94 -52.49 -0.42 1.80 16 30 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 31 H 0.04 0.79 7.85 -51.93 -0.41 0.39 16 32 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.12 2.39 7.61 -52.49 -0.40 2.00 16 37 H 0.12 1.71 6.30 -52.49 -0.33 1.38 16 LS Contribution 309.62 15.07 4.67 4.67 Total: -1.00 -31.66 309.62 -6.22 -37.88 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: -5.54 Total: -0.42 kcal Atomic # 6 Polarization: -18.00 SS G_CDS: -0.93 Total: -18.94 kcal Atomic # 7 Polarization: -27.55 SS G_CDS: 0.77 Total: -26.78 kcal Atomic # 8 Polarization: -13.22 SS G_CDS: -0.57 Total: -13.79 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.62 Total: 17.38 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -31.66 -6.22 -37.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259692170.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.242 kcal (2) G-P(sol) polarization free energy of solvation -31.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds