Wall clock time and date at job start Mon Mar 30 2020 06:54:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42892 * 109.47357 * 2 1 4 4 C 1.35899 * 117.00159 * 180.02562 * 3 2 1 5 5 C 1.38731 * 120.05413 * 179.97438 * 4 3 2 6 6 C 1.38154 * 119.94256 * 179.97438 * 5 4 3 7 7 C 1.38263 * 120.05245 * 0.02562 * 6 5 4 8 8 C 1.50698 * 119.94222 * 179.97438 * 7 6 5 9 9 H 1.09008 * 109.47203 * 4.79746 * 8 7 6 10 10 C 1.50694 * 109.47461 * 124.79917 * 8 7 6 11 11 H 1.08007 * 120.00168 * 65.52215 * 10 8 7 12 12 C 1.37881 * 120.00178 * 245.52873 * 10 8 7 13 13 N 1.31510 * 119.99961 * 186.35243 * 12 10 8 14 14 Si 1.86801 * 119.99969 * 6.35308 * 12 10 8 15 15 H 1.48507 * 109.46731 * 266.21312 * 14 12 10 16 16 H 1.48499 * 109.46904 * 26.20757 * 14 12 10 17 17 H 1.48497 * 109.47075 * 146.21496 * 14 12 10 18 18 C 1.53003 * 109.46972 * 244.80116 * 8 7 6 19 19 O 1.42900 * 109.46947 * 174.69256 * 18 8 7 20 20 C 1.42899 * 113.99918 * 179.97438 * 19 18 8 21 21 C 1.38268 * 120.11390 * 0.26755 * 7 6 5 22 22 C 1.38151 * 120.05491 * 359.45819 * 21 7 6 23 23 H 1.09001 * 109.47012 * 300.00214 * 1 2 3 24 24 H 1.09005 * 109.47200 * 60.00409 * 1 2 3 25 25 H 1.09008 * 109.47597 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47012 * 239.99786 * 2 1 3 27 27 H 1.09004 * 109.46536 * 119.99939 * 2 1 3 28 28 H 1.07997 * 120.03364 * 359.95407 * 5 4 3 29 29 H 1.07994 * 119.96844 * 180.02562 * 6 5 4 30 30 H 0.97007 * 120.00220 * 179.97438 * 13 12 10 31 31 H 1.08997 * 109.46757 * 294.68643 * 18 8 7 32 32 H 1.08996 * 109.47416 * 54.69220 * 18 8 7 33 33 H 1.09005 * 109.46917 * 59.99841 * 20 19 18 34 34 H 1.08999 * 109.47118 * 179.97438 * 20 19 18 35 35 H 1.08993 * 109.47240 * 299.99812 * 20 19 18 36 36 H 1.07998 * 119.97096 * 179.70486 * 21 7 6 37 37 H 1.07990 * 120.02507 * 180.27306 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3536 1.5252 -0.0005 5 6 3.8851 2.8067 -0.0011 6 6 5.2551 2.9850 -0.0011 7 6 6.0962 1.8876 -0.0011 8 6 7.5902 2.0850 -0.0017 9 1 7.8163 3.1480 0.0839 10 6 8.1949 1.3474 1.1649 11 1 8.1505 0.2689 1.2036 12 6 8.8048 2.0491 2.1831 13 7 9.4410 1.4046 3.1367 14 14 8.7274 3.9154 2.2079 15 1 9.9356 4.4697 1.5457 16 1 7.5134 4.3701 1.4837 17 1 8.6720 4.3898 3.6140 18 6 8.1757 1.5426 -1.3070 19 8 9.5724 1.8400 -1.3624 20 6 10.2194 1.3735 -2.5481 21 6 5.5689 0.6095 -0.0067 22 6 4.1997 0.4258 -0.0009 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8901 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8932 -0.5139 0.8901 28 1 3.2286 3.6642 -0.0019 29 1 5.6693 3.9824 -0.0012 30 1 9.8704 1.8983 3.8528 31 1 8.0323 0.4629 -1.3484 32 1 7.6711 2.0089 -2.1531 33 1 9.7571 1.8360 -3.4202 34 1 11.2760 1.6388 -2.5137 35 1 10.1184 0.2903 -2.6149 36 1 6.2281 -0.2460 -0.0115 37 1 3.7884 -0.5727 -0.0008 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259692170.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:26 Heat of formation + Delta-G solvation = -86.993780 kcal Electronic energy + Delta-G solvation = -18154.904499 eV Core-core repulsion = 15282.703495 eV Total energy + Delta-G solvation = -2872.201005 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.05287 -39.24981 -38.17281 -35.33663 -33.49352 -32.36413 -31.76279 -29.17424 -27.66134 -26.21750 -24.85904 -23.90480 -22.48928 -21.24231 -19.15427 -19.09328 -17.45619 -16.96338 -16.69363 -16.46231 -16.23940 -16.07464 -15.44938 -15.06859 -14.53238 -14.33522 -14.30406 -14.21727 -13.66158 -13.32496 -13.15692 -13.02694 -12.76666 -12.56593 -12.29244 -12.21049 -11.85511 -11.73273 -11.61772 -11.29160 -11.06672 -10.67105 -10.35735 -9.83868 -8.86485 -8.23689 -6.23955 0.49760 0.62191 1.36860 1.39116 1.46847 2.34052 2.40168 2.88931 3.08721 3.24720 3.93069 4.02749 4.09227 4.20460 4.34915 4.38013 4.40350 4.46049 4.55127 4.60460 4.61389 4.65416 4.74580 4.85623 4.94213 4.97459 4.98000 5.06958 5.23229 5.26677 5.43506 5.58255 5.62457 5.91741 5.94927 6.33721 6.51497 6.57075 6.79686 7.39614 8.93102 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.022088 B = 0.006161 C = 0.005476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.375212 B = 4543.600571 C = 5112.248151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.043 3.957 3 O -0.330 6.330 4 C 0.104 3.896 5 C -0.154 4.154 6 C -0.100 4.100 7 C -0.094 4.094 8 C 0.042 3.958 9 H 0.048 0.952 10 C -0.484 4.484 11 H 0.035 0.965 12 C 0.016 3.984 13 N -0.950 5.950 14 Si 0.932 3.068 15 H -0.274 1.274 16 H -0.237 1.237 17 H -0.291 1.291 18 C 0.087 3.913 19 O -0.411 6.411 20 C 0.025 3.975 21 C -0.079 4.079 22 C -0.204 4.204 23 H 0.062 0.938 24 H 0.066 0.934 25 H 0.099 0.901 26 H 0.069 0.931 27 H 0.062 0.938 28 H 0.144 0.856 29 H 0.130 0.870 30 H 0.263 0.737 31 H 0.036 0.964 32 H 0.049 0.951 33 H 0.054 0.946 34 H 0.090 0.910 35 H 0.040 0.960 36 H 0.113 0.887 37 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.691 -0.322 -10.611 17.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.032 4.032 3 O -0.245 6.245 4 C 0.059 3.941 5 C -0.172 4.172 6 C -0.118 4.118 7 C -0.095 4.095 8 C 0.023 3.977 9 H 0.066 0.934 10 C -0.522 4.522 11 H 0.054 0.946 12 C -0.181 4.181 13 N -0.591 5.591 14 Si 0.757 3.243 15 H -0.200 1.200 16 H -0.161 1.161 17 H -0.217 1.217 18 C 0.010 3.990 19 O -0.330 6.330 20 C -0.071 4.071 21 C -0.097 4.097 22 C -0.223 4.223 23 H 0.081 0.919 24 H 0.085 0.915 25 H 0.118 0.882 26 H 0.087 0.913 27 H 0.080 0.920 28 H 0.161 0.839 29 H 0.148 0.852 30 H 0.071 0.929 31 H 0.054 0.946 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.109 0.891 35 H 0.059 0.941 36 H 0.131 0.869 37 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -13.665 -0.076 -10.311 17.119 hybrid contribution 0.604 0.071 0.389 0.722 sum -13.060 -0.005 -9.922 16.402 Atomic orbital electron populations 1.21789 0.91068 1.04149 1.03249 1.23040 0.97104 0.81110 1.01941 1.86007 1.18447 1.30955 1.89109 1.18963 0.82517 0.94185 0.98388 1.20511 0.94675 0.95408 1.06618 1.21035 0.92536 0.98750 0.99476 1.20191 0.96001 0.93612 0.99709 1.18245 0.88708 0.97413 0.93287 0.93370 1.20919 1.34070 0.93186 1.04018 0.94632 1.25831 0.94141 1.02937 0.95141 1.70046 1.36834 1.37699 1.14476 0.85945 0.80078 0.81198 0.77066 1.19956 1.16058 1.21717 1.22542 0.80914 0.98294 0.97255 1.87958 1.23007 1.79997 1.42023 1.22881 0.98469 0.98633 0.87139 1.20806 0.94404 0.96921 0.97569 1.21345 0.93539 0.98786 1.08608 0.91927 0.91520 0.88201 0.91268 0.91984 0.83862 0.85228 0.92856 0.94570 0.93276 0.92742 0.89107 0.94099 0.86900 0.83859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 10.28 71.98 0.74 -1.40 16 2 C 0.04 0.87 5.46 71.98 0.39 1.27 16 3 O -0.33 -9.33 10.14 -92.41 -0.94 -10.27 16 4 C 0.10 3.37 6.69 22.50 0.15 3.52 16 5 C -0.15 -5.04 9.99 22.37 0.22 -4.82 16 6 C -0.10 -3.68 9.66 22.26 0.22 -3.47 16 7 C -0.09 -3.93 4.78 -19.85 -0.09 -4.02 16 8 C 0.04 1.99 2.11 -12.29 -0.03 1.96 16 9 H 0.05 2.28 4.40 -2.38 -0.01 2.27 16 10 C -0.48 -27.64 8.10 25.60 0.21 -27.43 16 11 H 0.04 2.23 7.85 -2.91 -0.02 2.21 16 12 C 0.02 0.96 5.47 84.66 0.46 1.42 16 13 N -0.95 -60.61 13.96 21.45 0.30 -60.31 16 14 Si 0.93 45.70 27.19 68.60 1.86 47.57 16 15 H -0.27 -13.28 7.11 99.48 0.71 -12.57 16 16 H -0.24 -10.50 6.48 99.48 0.64 -9.86 16 17 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 18 C 0.09 3.59 5.10 71.98 0.37 3.96 16 19 O -0.41 -17.91 10.46 -148.98 -1.56 -19.47 16 20 C 0.03 0.78 11.01 113.37 1.25 2.03 16 21 C -0.08 -3.06 8.86 22.26 0.20 -2.86 16 22 C -0.20 -6.70 9.04 22.37 0.20 -6.50 16 23 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 24 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 25 H 0.10 0.98 8.14 -2.38 -0.02 0.96 16 26 H 0.07 1.27 7.66 -2.39 -0.02 1.25 16 27 H 0.06 1.25 7.66 -2.38 -0.02 1.23 16 28 H 0.14 3.96 8.06 -2.91 -0.02 3.93 16 29 H 0.13 4.45 7.94 -2.91 -0.02 4.43 16 30 H 0.26 15.79 8.31 -92.70 -0.77 15.02 16 31 H 0.04 1.48 7.85 -2.39 -0.02 1.47 16 32 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.05 1.40 8.14 -2.38 -0.02 1.38 16 34 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 35 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.11 4.51 7.61 -2.91 -0.02 4.49 16 37 H 0.14 3.84 6.30 -2.92 -0.02 3.82 16 Total: -1.00 -69.86 309.62 4.93 -64.93 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: 0.98 Total: 13.90 kcal Atomic # 6 Polarization: -40.63 SS G_CDS: 4.29 Total: -36.35 kcal Atomic # 7 Polarization: -60.61 SS G_CDS: 0.30 Total: -60.31 kcal Atomic # 8 Polarization: -27.24 SS G_CDS: -2.50 Total: -29.74 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 1.86 Total: 47.57 kcal Total: -69.86 4.93 -64.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259692170.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.066 kcal (2) G-P(sol) polarization free energy of solvation -69.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds