Wall clock time and date at job start Mon Mar 30 2020 06:24:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35999 * 116.99879 * 2 1 4 4 C 1.38564 * 120.07316 * 359.97438 * 3 2 1 5 5 C 1.38239 * 119.99909 * 180.02562 * 4 3 2 6 6 C 1.38256 * 120.14454 * 359.71673 * 5 4 3 7 7 C 1.38244 * 120.14816 * 0.55568 * 6 5 4 8 8 C 1.50695 * 120.00285 * 179.72169 * 7 6 5 9 9 H 1.08992 * 109.47354 * 179.72886 * 8 7 6 10 10 C 1.50706 * 109.46984 * 299.72624 * 8 7 6 11 11 H 1.08007 * 119.99794 * 54.99302 * 10 8 7 12 12 C 1.37875 * 120.00154 * 235.26747 * 10 8 7 13 13 N 1.31509 * 119.99791 * 176.55165 * 12 10 8 14 14 Si 1.86798 * 119.99881 * 356.54887 * 12 10 8 15 15 H 1.48504 * 109.46931 * 85.34367 * 14 12 10 16 16 H 1.48498 * 109.47277 * 205.34415 * 14 12 10 17 17 H 1.48499 * 109.47455 * 325.35164 * 14 12 10 18 18 C 1.53004 * 109.47130 * 59.72762 * 8 7 6 19 19 C 1.52992 * 109.46989 * 61.15186 * 18 8 7 20 20 C 1.52999 * 109.47014 * 181.15288 * 18 8 7 21 21 C 1.38568 * 119.99481 * 359.45040 * 7 6 5 22 22 O 1.35995 * 120.06768 * 180.30016 * 21 7 6 23 23 H 1.08998 * 109.47414 * 299.99957 * 1 2 3 24 24 H 1.09004 * 109.46945 * 59.99876 * 1 2 3 25 25 H 1.09003 * 109.47151 * 179.97438 * 1 2 3 26 26 H 1.08000 * 119.99770 * 0.03792 * 4 3 2 27 27 H 1.07990 * 119.92847 * 179.97438 * 5 4 3 28 28 H 1.08001 * 119.92615 * 180.30610 * 6 5 4 29 29 H 0.96999 * 119.99914 * 180.02562 * 13 12 10 30 30 H 1.09002 * 109.46849 * 301.15171 * 18 8 7 31 31 H 1.09002 * 109.47337 * 60.00284 * 19 18 8 32 32 H 1.09000 * 109.46860 * 179.97438 * 19 18 8 33 33 H 1.09000 * 109.47590 * 299.99644 * 19 18 8 34 34 H 1.09008 * 109.47248 * 58.17057 * 20 18 8 35 35 H 1.09000 * 109.47007 * 178.16649 * 20 18 8 36 36 H 1.09002 * 109.47314 * 298.17174 * 20 18 8 37 37 H 0.96691 * 114.00368 * 90.00016 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2932 2.3748 -0.0005 5 6 1.9223 3.6057 -0.0011 6 6 3.3029 3.6798 0.0048 7 6 4.0603 2.5233 -0.0003 8 6 5.5649 2.6080 -0.0002 9 1 5.9853 1.6024 0.0003 10 6 6.0266 3.3449 -1.2310 11 1 5.6447 4.3325 -1.4442 12 6 6.9324 2.7563 -2.0878 13 7 7.2837 3.3704 -3.1963 14 14 7.6604 1.0866 -1.6739 15 1 6.7452 0.0167 -2.1462 16 1 8.9783 0.9416 -2.3428 17 1 7.8364 0.9738 -0.2037 18 6 6.0334 3.3572 1.2488 19 6 5.5893 2.5939 2.4981 20 6 7.5593 3.4683 1.2345 21 6 3.4359 1.2863 0.0001 22 8 4.1795 0.1477 0.0013 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 0.2146 2.3196 -0.0003 27 1 1.3342 4.5114 -0.0019 28 1 3.7907 4.6434 0.0094 29 1 7.9206 2.9561 -3.7993 30 1 5.5966 4.3558 1.2587 31 1 6.0262 1.5953 2.4882 32 1 5.9235 3.1274 3.3879 33 1 4.5022 2.5148 2.5084 34 1 7.8777 3.9837 0.3283 35 1 7.8909 4.0303 2.1076 36 1 7.9965 2.4700 1.2574 37 1 4.3941 -0.1811 0.8849 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259741655.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:05 Heat of formation + Delta-G solvation = -70.089578 kcal Electronic energy + Delta-G solvation = -19134.735530 eV Core-core repulsion = 16263.267546 eV Total energy + Delta-G solvation = -2871.467983 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.00995 -37.89094 -36.10275 -35.34811 -32.23449 -30.34728 -29.23014 -27.44623 -26.94712 -26.03327 -23.03860 -21.96197 -20.95119 -18.86021 -17.94049 -17.13188 -16.77665 -15.72677 -15.57740 -14.85739 -14.30032 -14.24159 -13.77863 -13.65577 -13.15012 -12.93547 -12.33515 -12.33055 -11.89907 -11.72376 -11.65029 -11.42447 -10.91688 -10.80165 -10.71661 -10.62537 -10.34929 -10.27775 -9.80892 -9.63323 -9.41475 -8.99233 -8.50194 -7.84420 -7.60929 -6.07765 -4.06134 1.83763 1.99276 3.37490 3.43232 3.49159 3.54481 4.24596 4.47024 4.78613 5.09702 5.22896 5.25379 5.34892 5.48214 5.59013 5.71291 5.83391 5.85475 5.95712 5.98426 6.18916 6.36723 6.46068 6.53972 6.58411 6.66816 6.70606 6.79633 6.94516 7.13957 7.16701 7.28863 7.39985 7.49451 7.64694 7.74453 8.32959 8.50094 8.96158 9.55179 11.04412 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.021994 B = 0.008523 C = 0.007882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.758550 B = 3284.457893 C = 3551.459047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.314 6.314 3 C 0.096 3.904 4 C -0.224 4.224 5 C -0.093 4.093 6 C -0.132 4.132 7 C -0.010 4.010 8 C 0.047 3.953 9 H 0.055 0.945 10 C -0.497 4.497 11 H 0.076 0.924 12 C 0.077 3.923 13 N -0.897 5.897 14 Si 0.872 3.128 15 H -0.271 1.271 16 H -0.294 1.294 17 H -0.260 1.260 18 C -0.083 4.083 19 C -0.149 4.149 20 C -0.138 4.138 21 C 0.056 3.944 22 O -0.480 6.480 23 H 0.050 0.950 24 H 0.051 0.949 25 H 0.093 0.907 26 H 0.120 0.880 27 H 0.117 0.883 28 H 0.126 0.874 29 H 0.264 0.736 30 H 0.060 0.940 31 H 0.045 0.955 32 H 0.042 0.958 33 H 0.046 0.954 34 H 0.074 0.926 35 H 0.032 0.968 36 H 0.042 0.958 37 H 0.372 0.628 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.820 -3.301 9.927 14.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.227 6.227 3 C 0.051 3.949 4 C -0.243 4.243 5 C -0.111 4.111 6 C -0.150 4.150 7 C -0.011 4.011 8 C 0.028 3.972 9 H 0.073 0.927 10 C -0.534 4.534 11 H 0.094 0.906 12 C -0.126 4.126 13 N -0.534 5.534 14 Si 0.700 3.300 15 H -0.196 1.196 16 H -0.220 1.220 17 H -0.185 1.185 18 C -0.102 4.102 19 C -0.206 4.206 20 C -0.195 4.195 21 C 0.010 3.990 22 O -0.288 6.288 23 H 0.069 0.931 24 H 0.070 0.930 25 H 0.111 0.889 26 H 0.138 0.862 27 H 0.135 0.865 28 H 0.144 0.856 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.093 0.907 35 H 0.051 0.949 36 H 0.061 0.939 37 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -9.646 -3.452 9.123 13.719 hybrid contribution 0.050 -0.814 0.432 0.923 sum -9.597 -4.266 9.555 14.199 Atomic orbital electron populations 1.22959 0.79561 1.03159 1.00963 1.86119 1.20359 1.27052 1.89203 1.19427 0.91691 0.84327 0.99454 1.20855 0.99030 0.92164 1.12241 1.20864 0.94835 0.96380 0.99034 1.20847 0.92651 0.98680 1.02816 1.20731 0.99014 0.90323 0.91028 1.18406 0.86211 0.97870 0.94745 0.92674 1.20800 1.24523 1.03243 1.04879 0.90627 1.25048 0.96057 0.97120 0.94353 1.69894 1.33507 1.38983 1.10967 0.86950 0.78411 0.85435 0.79183 1.19604 1.22040 1.18487 1.21242 0.95918 0.99006 0.93991 1.21950 1.00374 1.00087 0.98209 1.21776 0.95782 1.00748 1.01181 1.17652 0.85528 0.86685 1.09105 1.84955 1.72022 1.39791 1.31988 0.93144 0.93003 0.88857 0.86232 0.86494 0.85634 0.92607 0.92122 0.93629 0.93918 0.93506 0.90733 0.94908 0.93939 0.77494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 9.81 101.05 0.99 1.32 16 2 O -0.31 -5.28 10.28 -34.24 -0.35 -5.63 16 3 C 0.10 1.77 6.70 -39.12 -0.26 1.51 16 4 C -0.22 -3.64 9.04 -39.46 -0.36 -4.00 16 5 C -0.09 -1.54 10.04 -39.57 -0.40 -1.94 16 6 C -0.13 -2.54 8.76 -39.57 -0.35 -2.88 16 7 C -0.01 -0.21 3.57 -104.50 -0.37 -0.58 16 8 C 0.05 1.06 1.46 -92.92 -0.14 0.92 16 9 H 0.06 1.31 3.58 -51.93 -0.19 1.12 16 10 C -0.50 -13.45 7.17 -34.44 -0.25 -13.70 16 11 H 0.08 2.21 7.91 -52.48 -0.42 1.79 16 12 C 0.08 2.18 5.46 -17.82 -0.10 2.09 16 13 N -0.90 -27.18 13.96 55.43 0.77 -26.40 16 14 Si 0.87 22.01 26.74 -169.99 -4.55 17.47 16 15 H -0.27 -7.05 7.11 56.52 0.40 -6.65 16 16 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 17 H -0.26 -6.11 5.57 56.52 0.32 -5.79 16 18 C -0.08 -1.62 2.33 -90.62 -0.21 -1.84 16 19 C -0.15 -2.47 8.96 37.15 0.33 -2.13 16 20 C -0.14 -2.71 8.73 37.16 0.32 -2.38 16 21 C 0.06 1.15 6.69 -39.12 -0.26 0.88 16 22 O -0.48 -9.78 12.05 -34.23 -0.41 -10.19 16 23 H 0.05 0.50 7.66 -51.93 -0.40 0.10 16 24 H 0.05 0.56 7.66 -51.93 -0.40 0.16 16 25 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.12 1.57 6.30 -52.49 -0.33 1.24 16 27 H 0.12 1.58 8.06 -52.49 -0.42 1.15 16 28 H 0.13 2.38 7.46 -52.49 -0.39 1.99 16 29 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 30 H 0.06 1.18 7.33 -51.93 -0.38 0.80 16 31 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.05 0.76 7.25 -51.93 -0.38 0.38 16 34 H 0.07 1.64 7.11 -51.92 -0.37 1.27 16 35 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.04 0.84 6.98 -51.93 -0.36 0.48 16 37 H 0.37 5.74 9.06 45.56 0.41 6.15 16 LS Contribution 298.80 15.07 4.50 4.50 Total: -1.00 -31.86 298.80 -5.60 -37.47 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -4.53 Total: 5.51 kcal Atomic # 6 Polarization: -21.68 SS G_CDS: -1.04 Total: -22.72 kcal Atomic # 7 Polarization: -27.18 SS G_CDS: 0.77 Total: -26.40 kcal Atomic # 8 Polarization: -15.06 SS G_CDS: -0.76 Total: -15.82 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.55 Total: 17.47 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -31.86 -5.60 -37.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259741655.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.622 kcal (2) G-P(sol) polarization free energy of solvation -31.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds